Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                  --------->LBD16                                               <---------O2 ---------ANAC55(2)                            <---------ANAC46 -------->ANAC55(2)                            --------->DEAR3(1) ------TEIL                                   <------NtERF2                        <----------DOF2  < ---->CCA1(2)                               --------->ANAC46              --------->ANAC46         -- ->ANAC58                                --------->TOE1(2)         <---------ETT(2)------------------ ->ANAC58           ------->TEIL         --------->TOE2(2)---------->DOF2<---------TOE2(3)    <------   atacgtaggctctctccccatgaaccggttctaaattcgaaaacatgcgccgtggaaacatcaagccggtcgataaacgttacgactttgtaatcgtcgt  5495200                                                        --------->SPL7                                                      <---------SPL7                                                     <------MYB46(1)                                                     <------MYB83                                                    --------------->AtSPL8                                                    <---------------AtSPL8                                                    --------->MYB59                                                    <---------------AtSPL3                                                 <---------ARR14(2)       --------->HSFB2a(2)                                              --------->LBD16         <---------ANAC46    <-----------HVH21                        <---------LBD16          <---------ANAC58  --------->LBD16                       <----------TaMYB80  <------ZmHOX2a(2) ---------LBD16       <---------GLK1(2)---------->TaMYB80  --------->ARR11(3)     <---------ARR14(2) ----->TEIL --------->ANAC46   ------->TEIL <---------LBD16<---------ARR11(3)--------->MYB52(1)------ --->WRI1--------->MYB52(1)   <---------CCA1(2)  --------->ARR14(2)   <---------ANAC58  --------->ANAC46 ---ANAC46  ------->GAMYB--------->ATHB12  --------->MYB52(1)------>ZmHOX2a(2)    --------->ARR14(2)   gaaccgggtcataaccgaaacccagaatgtttgaatcttggtatataccgggatttggtacgatcttgaattgcttcgaaaacggattccaaaccattaa  5495300                                                                          ------>ZmHOX2a(2)                                                                     <---------WOX13(1)                                                                  --------->WRKY38(1)                                                                  --------->WRKY12                       --------->DAG2                          --------->ATHB12                    --            ----------->GT1                    ------->MYC3   <------ZmHOX2a(2)               <------           <---------TOE2(3)          ---------->DOF2         <---------ATHB12            <---------ANAC58       <----------DOF2---------->DOF2<---------ATHB12  <-------TEIL<---------WRKY18(1)    <---------ANAC58 ---->DOF2 <---------TOE1(3)    --------->YAB1 <-------MYC3   <---------YAB1       --------->GLK1(1)   agtgtgattctttaaggtaacacataaagtcccatcacaatgaagcacacatgtagattcatcgatcattgactgatccaaggggaaatcgagcttgttt  5495400                                                     <----------ID1                                                     --------->ANAC46                                                     --------->ANAC58 <------NtERF2                                              <---------ANAC46      <---------ANAC46           <---------ANAC58            --------->ARR11(3)           --------->ETT(1)      --------->LBD16              ---------->DOF2   --------->ANAC58--------->LBD16    <---------LBD16        --------->ANAC58   ----------->GT1      <---------LBD16   --------->SPL7 <   --------->MYB52(1)  <-----------HVH21 <---------ANAC58      <----------DOF2       <-------TEIL<---  <-----------GT1      --------->TOE2(3) <---------ANAC58 --------->ANAC58         <---------SPL7---- ------->YAB1         --------->ANAC46 <---------ARR11(3) --------->ANAC58       <---------------AtSPL3 ---ANAC46 <---------ANAC58--------->ANAC58  ---------->ID1  ------->TEIL----------------------->TaNAC69(2)   gtaataaccggatgcttgccttcaacgtcaagcatgtaaaagttcttgtcgtaaaacgacacgaactttgccggagacatgtctcggtacgtttctgtga  5495500                                                         ------>ZmHOX2a(2)                                                        <------ZmHOX2a(2)                  ------>ZmHOX2a(2)     <---------At4g35610                 --------->GLK1(1)      ----------->RAV1(2)                 <------ZmHOX2a(2)      --------->At4g35610------>ZmHOX2a(1)                 <---------GLK1(1)     ------->TEIL    --------->ARR14(3)       <-------GAMYB        <---------ANAC58           <---------ARR14(3)      <---------MYB46(3)    <---------ANAC58           --------->ARR11(3)      --------->MYB52(2)    <---------ANAC46           --------->ARR14(2)                           < --------->LBD16<-----------ARR10   --------->ANAC58   <---------GLK1(2)                            < ---------LBD16 --------->ARR11(3)  --------->ANAC58   <---------ARR14(2)         --------->TOE2(3) < ------ARR14(2) <---------AGP1--------->AtLEC2         <---------ARR11(3)       --------->GLK1(2)   - ----->ARR14(2) <---------ARR11(3)  --------->ANAC46 ----------->ARR10         <---------GLK1(2)   <-   atccagggtcgttgataagatctctccatgtcttgcagacgcatctgaatcgagcaagatccttcatcgatagcctcactagaatctcaatggctaattc  5495600        --------->HSFC1(2)        <---------HSFB2a(1)                 ------->TEIL        --------->HSFB2a(1)                 --------->MYB52(1)        <---------HSFC1(2)                  <---------ARR14(2)  --------->LBD16                        --------->ANAC55(2)         <------ZmHOX2a(1) --------->LBD16                         <---------ANAC55(2)        <------MYB83 ---------HSFB2a(2)              <-------GAMYB                      <------MYB46(1) ---------ANAC46                <---------MYB46(3)                <--------P ---------LBD16                <---------TOE2(3)             --------->DAG2 -------->HSFB2a(2)          <-----------RAV1(1)            ---------->DOF2    ---------->DOF2 --------LBD16          <---------AHL20(2)  --------->ARR14(2) <---------------AtSPL8      <---------   ttccgggagaaatttcgacatttgattttttttgtggttgaagacgtatcggtatggctcaaaaaagggtaggaaacaaataaaaggttttgtcttttga  5495700                     <---------ANAC46                     <------MYB83                     <------MYB46(1)                    --------->MYB55(2)                                             <---------TOE1(2)                    --------->MYB46(2)                                            --------->ANAC55(2)                    <---------AtMYB61                                             <---------ANAC46                    --------->MYB111(2)          <---------AHL20(2)               <---------ANAC58                    --------->MYB52(2)          --------->AHL20(2)                <---------ANAC58                    --------->MYB59        <---------AHL20(2)            --------->ANAC46 --------->LBD16               --------->DAG2     --------->ARR14(2)                   --------->ANAC46   ------>NtERF2              ---------->DOF2     <---------ARR14(2)----------->TBP    --------->REM1(1) <---------RAP2.6(2)  --------->AHL20(2)--------->MYB111(1)    --------->AHL20(2)        <-----------GT1--------->ALFIN1 -DOF2  ----------->GT1--------->ALFIN1<---------AtLEC2---------->DOF2 <---------ALFIN1 <---------LBD16   tgaattaaaaatgaaaaaaagttaggtggagttgcaaatttgcattaaaattttataaaaagagaacatttctacacctcattcgcgtgttccggcatca  5495800                                         <------------CBF                                        <---------AHL20(2)                                        --------->ATHB12                                        <---------ICU4                                       <---------AHL20(2)                --------->ANAC58              --------->ATHB12      --------->AHL20(2)                   --------->ANAC58  <---------              <---------ICU4        <---------AHL20(2)                   <---------ANAC55(2)             --------->ICU4        <---------AHL20(2)       ------------>CBF------->TEIL   --------->WOX13(1)             <---------YAB1        --------->AHL20(2)  --------->AHL20(2)--------->ANAC55(2) <-------           --------->YAB1         <---------WOX13(1)   <---------AHL20(2)--------->ANAC55(1)-------->P       <---------ICU4           --------->ATHB12  <---------AHL20(1)----------->HVH21    <---------ATHB12      <---------YAB1         <------------CBF    --------->YAB1 --------->ICU4           <XXXXXXXXXXX   ctaacttcatcattcatgattactctaaacaaattgatttatttattgctaacatattttaatgcaatatttgacacgtacttgaagactaatcaaccat  5495900                                                        <---------AHL20(2)                                        <---------AHL20(2)                  <---------TOE2(3)    <---------AHL20(2)                  <---------TOE1(3)    <---------AHL20(1)    <---------AHL20(2)  --------->GLK1(2)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   <---------YAB1 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             <---------YAB1            --------->AHL20(2)    <---------AHL20(1)  <---------ARR11(3)        ----------->GT1                --------->AHL20(1)  <---------YAB1 <---------ZAT18         ---       <---------TOE1(3)  --------->ANAC58          <----------DOF2  <---------YAB1 <----------DOF2 --GT1 <---------TOE2(3)  --------->ANAC58         <---------DAG2    <---------TOE2(3)   <----------DOF2 --ATHB12   --------->KAN4(2)     <xxxxxxxxxxxxxxxxsmallRNA(s)<---------YAB1 --------->ANAC46   <---- XXXXXXXXXMIR1886.2       --------->ANAC46         --------->TOE2(3)<-----------GT1<---------ICU4 ---   ttcatctctaaggttattctaaggttataggcaatggcaaatttattcaataaccttttttattattttttaacattgcacataatcttttctttcttcc  5496000                                                                                               ------                           <-----------GT1                                              <---------AHL20(2)                          <---------AHL20(2)                                      --------->AHL20(2)    <---------ICU4    --------->ICU4                                              <---------AHL20(2)<   --------->ICU4<---------ANAC55(2)               <---------ALFIN1          <---------AHL20(2)<-----   <---------YAB1--------->ANAC46          <---------AHL20(2)                <---------YAB1 --------- <---------ICU4  --------->ANAC55(2)      --------->AHL20(2)              <---------AHL20(2)<-------- ------>ANAC46   --------->ANAC58         <---------AHL20(1)         <---------YAB1     --------->AHL20(2) -----ALFIN1<---------ARR11(3)            <---------AHL20(2) ------>ZmHOX2a(1)   <---------AHL20(2) - ------>bZIP60(2)--------->ANAC58     <---------AHL20(2)    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<----   acatcattattcaacatctacgtaatttttaatcacttgtttaataaaattcaacactctatcctacaattcttattttataatttatatttatttatat  5496100  Previous    Next  AGI:  At3g16210.1    Description:  F-box family protein. Identical to Putative F-box protein At3g16210 [Arabidopsis Thaliana] (GB:Q9LU24); similar to F-box family protein-related [Arabidopsis thaliana] (TAIR:AT1G32600.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45298.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain F-box associated type 1 (InterPro:IPR006527) Range:  from: 5494539    to: 5495621    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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