Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                    --------->ZAT14                                                                         <----------DOF2 ---->ZmHOX2a(2)                                  ------->GAMYB         <---------ANAC58 -->HSFB2a(2)    --------->YAB1                 -------->P              <---------ANAC58    <-------- ---HSFB2a(2)  *TSS                           --------->MYB46(3)   <---------MYB52(1)     --------->ANAC55(2)   atctctctctatcaaacaaacaaaatttgctctctctgtgttcttggagcaaccgagtcaaaacgctccgttttgctttctcagtttagtttatgtaatt  5387100                                                   <---------ATHB12                                                 --------->WOX13(1)                                                <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                           <---------ANAC58                                           --------->ANAC55(2)                                <------                                           <---------ANAC58                               --------->At5g28300                                           <---------ANAC46                              ----------->GT1                                       <---------ANAC58       ----------->RAV1(1)        xxxxxxxxxxxx     ----------->GT1                   <---------ANAC58      --------->ANAC46           <---------DEAR3(1) -AHL20(2)          --------->ANAC46 <---------MYB46(3)      ----------->HVH21  <----------DOF2   tgataagtagtaatttcacaacaagtcgctctcgtctagtggtttgcgtattaatcaatttgtgcgacacgagttcgatcgactttaagagcggtgaaga  5387200                                                                    <---------At4g35610                                                               ----------->RAV1(2)                       ----------->HVH21                      <---------SPL7                        <                       <------NtERF2                         xxxxxxxxxxxxxxxx>smallRNA(s)           <                      <---------RAP2.6(3)                    <---------ANAC46                       <                      <-----------HVH21                      <---------ANAC58                       <                     --------->RAP2.6(2)                   <---------ZAT18                       ----                     --------->ANAC46             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)         <----              --------->ANAC58                  <---------YAB1<---------RAP2.6(3)              <-----              --------->ANAC58               ----------->TGA1<---------ANAC58                  <-----              <---------ANAC55(2)            ----------->HVH21------>NtERF2                    <-----              <---------ANAC46           ------>MYB46(1)   --------->ZAT18                 <-------GAMYB             <---------LBD16             ------>MYB83    ------->PIF5                     --------->LBD16           ----------->HVH21             xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       <---------ARR14(2)         <---------ANAC55(2)            --------->MYB52(1) xxxxxxxxxxxxxxxx>smallRNA(s)  <---------ANAC46 ---YAB1 --------->ANAC55(2)       ------>ZmHOX2a(1)     <-------PIF5   <----------DOF2 <---------LBD16 xxxxxxxxx>smallRNA(se3)           ----------->HVH21 xxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->ARR14(2)   tagaacaaattatgtgacggaagccgtcacagtcgtcctgaccaactgtgacgatagcaagtgccgtctgagctcttttttttttttggttccggttgag  5387300       <-------GAMYB      --------->MYB111(2)                                                                    <-------      --------->MYB55(2)                                                                     <-------      <---------MYB46(3)                                                                    ---------    <-------GAMYB                                                                           ---------    <---------ANAC58                    ----------->HVH21                                   <--------    <---------ANAC58                <------MYB83                                            <-------- ---------bZIP60(2)                 <---------DEAR3(2)                                      --------- ---------ANAC58                   --------->MYB59                             ====================== ---------ANAC58             <---------LBD16      <---------YAB1               ------->GAMYB========= ---------ANAC46         ----------->HVH21      --------->YAB1        --------->YAB1 --------->ARR14(2) ------->HVH21       ---------->DOF2<------MYB46(1)              ------------>CBF  <------NtERF2 -----WOX13(1)     <---------MYB52(1)  --------->SPL7      ----------->RAV1(1)--------->MYB46(3) ----ANAC58       --------->LBD16--------->ARR14(2)       --------->ANAC58   --------->RAP2.6(3) ----ANAC58     <---------LBD16  <---------MYB52(1)       --------->ANAC58  --------->MYB52(1)     <- ----ANAC46   <---------ARR14(2) <---------ARR14(2)   <------ZmHOX2a(1)  --------->YAB1  ------>ZmHOX2a(1)   tgacttggttgttgaacatccggtaatgcgacccggttcggttcgaccgattatgaggagacgacagaacaataaacataacggccgagtcctcccgtca  5387400 ----TGA1                 --------->ARR11(3) ----HVH21        <---------ICU4 >TGA1a          --------->ICU4 >ANAC46      <---------YAB1                                                         <---------ZAT14 -TGA1a--------->ZAT18    <---------GLK1(2)                    ------>MYB46(1)       --------->ZAT14 -O2 <---------ZAT2 <---------YAB1                     --------->ANAC46        <-----------GT1 >O2 --------->ZAT2<------------CBF                   <---------------------WRI1 --------->ZAT6 =MYC_MYB  <----------DOF2<---------ARR11(3)        --------->TOE1(2)--------->ARR11(3)         ----- =====================bZIP_DOF                 <---------YAB1  ------>MYB83<----------DOF2    ------- ----------HVH21 <---------YAB1              <---------At4g35610     <---------ARR11(3)       <------   ctgtccgagctcgcttttgattattgtagatttttatgtgtttttggagatgattctgcgaaacccactaaaatctccttttaactctgaactatcgatc  5387500                                          --------->YAB1                                          --------->ATHB12                             --------->GLK1(2)                      <------ZmHOX2a(2)   <--------ATHB1        <---------At4g35610 <---------GLK1(2) --------->ANAC46    <-----------HVH21    <---------ICU4                                         ---- --------->ANAC58   ------->GAMYB        --------->ICU4                                          ---- --------->ANAC58  --------->MYB46(3)    <---------ATHB12                                        ---- ->ZmHOX2a(2)    <---------DOF5.7(2)     <---------YAB1                                  ------------ -->ARR11(3)    <---------WRKY12     ------------------>ATHB9                         <---------SPL7- ---ARR11(3)  <-----------HVH21   <---------CCA1(2)                                --------->MYB52(1)   ttcaaggcactgctcatgtcaacgatcacagaatctatatccaatgattactctcgtttcatctctatccttggagtttgcaaaacgacggaccaattca  5387600                                           ----------->RAV1(1)                                           ------>MYB46(1)                                        --------->ANAC58                                        --------->ANAC46                                      ------>MYB83<---------HSFB2a(2)                                      ------>MYB46(1)                                    <---------MYB111(1)                                    --------->AtMYB61                                    <---------MYB46(2)                                    <---------MYB111(2)                                    --------->MYB46(3)                                    <---------MYB52(2)                     --------->ZAT14    <------                                    <---------MYB55(2)        <----------DOF2                 <------   --------->AHL20(2)       --------->ALFIN1     ----------------->AGL3   <---------REM1(1)   ------- ----->ANAC58             <---------ANAC46 ------>MYB83       ======================================= ----->ANAC46        <---------YAB1--------->ANAC58        --------->ARR11(3)        <---------TOE2(3) ----->ANAC58   <---------ICU4     --------->ANAC58 ---------->DOF2       <---------ANAC46    ------- ----->AGL2 ---------->DOF2 <---------REM1(1)--------->HSFB2a(1)       <-----------RAV1(1)<------NtERF2 -------->WOX13(1)   <---------ANAC55(2)--------->ANAC58   <---------ARR11(3)        <---------AtMYB61   agcaattacattcacaaagcattacgagaggtgtagcaccaaacccaacattccaaaagaagctctttgtcttctggtgtagtcgtttaggtggccatgt  5387700                                          <---------MYB46(3)               ---------->DOF2                                         --------->ALFIN1                 <---------WRKY45                                       <---------ANAC58                   <---------WRKY12                                       <---------ANAC58                   <---------WRKY38(1)                                       <---------ANAC46                  --------->WRKY18(1)                                       <---------O2                      <<<<<<<<<<WRKY18                                       --------->O2                      <<<<<<<<<<WRKY40                                       <---------TGA1a                 <------MYB83                                       ============MYC_MYB             <------MYB46(1)                                       <---------bZIP60(2)            <---------AtMYB61                                       --------->TGA1a        <---------YAB1       <---------ANAC58   <---------YAB1                      =======================================MYC_MYB        <------- ---O2                                 ===============================================bZIP_DOF    <-- ---TGA1a                    --------->TOE1(3) <---------ANAC58       --------->MYB59  <---------YAB1 -->O2                      ----------->RAV1(2)<---------ANAC58      <--------P    <---------ANAC46 ===bZIP_DOF              --------->RVE1(1)<-------GAMYB   <---------YAB1<<<<<<<<<<WRKY62 <---------AtMYB61 -->TGA1a  --------->ANAC46--------->MYB52(1)  <---------ANAC46   <---------TOE2(3)<---------ANAC58   gagttatgcatacaagctgtttgtgaaaatacctgaaccagacgtggttgtgtggaacaatatgatcaaaggttggtcaaaggtggattgtgatggtgaa  5387800                                                     <-------MYC3                                                     ------->MYC3                                                    --------->ANAC46                                                    --------->O2                                                    ==================bZIP_DOF                                                    --------->TGA1a                                                    --------->ANAC55(1)                                                    <---------TGA1a                                                    <---------O2                                            --------->GLK1(1)                                           --------->ARR14(2)                                         --------->LBD16      <---------ANAC58                                  ----------->HVH21 --------->ANAC58                           <-----                                --------->ALFIN1    --------->ANAC58                       <------ZmHOX2a(1)                              <------MYB83 <---------ARR14(2) <---------ANAC58     ----------->HVH21< --REM1(1)                    <------MYB46(1)     <---------ALFIN1               <---------ANAC58   < ----ZmHOX2a(1)   --------->ARR11(3)   <---------LBD16     <----------DOF2       <---------ANAC58   <   ggagttagattgtatttgaatatgttgaaggaaggtgtgactccggatagccacacgtttcctttcttgttgaacggtcttaagcgtgatggaggagctt  5387900                                                                                               <-----             --------->At4g35610                                                               ------             <---------At4g35610                                                            <--------             --------->ZAT2        >>>>>>>>>SARD1     <----------DOF2                   <----------DOF2 -----DOF2  --------->GLK1(2)      >>>>>>>>>CBP60g   <---------ICU4                     ============= ---------ANAC58            ----------->GT1--------->MYB59                          ------->TEIL    - ---------ANAC58      ----------------->AGL1<------MYB83                        <---------------AtSPL8 ---------ANAC46<-------TEIL<---------ANAC46<------MYB46(1)  --------->ZAT18    --------------->AtSPL8   tggcttgtggtaagaagctgcattgccatgttgtgaaatttggattaggttctaatctttatgtgcagaatgctcttgtgaaaatgtactctttatgtgg  5388000  Previous    Next  AGI:  At3g15920.1    Description:  phox (PX) domain-containing protein. similar to phox (PX) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G32160.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62698.1); contains InterPro domain Phox-like; (InterPro:IPR001683) Range:  from: 5383602    to: 5387015    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g15930.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G29760.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62697.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 5387450    to: 5389696    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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