Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                   <---------GLK1(1)                                 --------->CCA1(2)                                <---------ARR14(2)                                --------->ARR14(2)                       --------->AHL20(1)                                      <----------DOF2                       <---------AHL20(2)             ---------->DOF2     ------->TEIL                       --------->AHL20(2)           <---------YAB1     <---------ANAC58                      --------->AHL20(2)          --------->YAB1       <---------ANAC58                <---------HSFB2a(2)               <---------ICU4      <---------------AtSPL8       <---------ATHB51<---------YAB1        <---------ARR11(3)       --------------->AtSPL8       --------->AHL20(2)      <------ZmHOX2a(1)  -------->HAHB4      <---------------AtSPL3       <---------AHL20(2)    <---------TOE2(3) --------->YAB1 ----------------------->TaNAC69(2)     --------->YAB1<---------GLK1(2)         --------->ARR11(3)  --------->AHL20(2)        <---------TOE2(2) ------->YAB1   --------->HSFB2a(2)<---------YAB1--------->ICU4  <---------AHL20(2)        <---------TOE1(2)   atgagaaaaataattcatctagaattttattgaggatatgagtataagataataatgaaagaaactattaattgtgtacgtctttatcgttcatatgttt  5298700                           --------->ANAC58                           --------->ANAC46                           --------->ANAC58                        <---------REM1(2)                 <-------TEIL                                 --------->ZAT6                <-----------GT1                         <---------YAB1                             --            --------->AHL20(2)                   <---------AHL20(2) --------->ZAT6               >>>>   tgttcaatggacatatatatacattctacacacaaactactataccacgattttttttatgctaacattacctctagctacagacagaagtagaaagaaa  5298800                                                                         <--------P --------->ANAC58                                                                        <---------ANAC58                                                                        <-------GAMYB                                                                       <------MYB83 --------->ANAC58                                                                       <------MYB46(1)                                                                       <---------MYB46(3)    <-------               <-----------GT1                          <---------HSFB2a(2)  <---------------AGL15          --------->ANAC55(2)                           --------->HSFB2a(2)  ========================        <-----------RAV1(2)                            <---------TOE1(1)<---------ANAC58     <-------      <-----------HVH21                               <-------TEIL    --------->MYB59        <------- ------->AtMYB61                        <---------GLK1(1)          ------->TEIL   ---------->DOF2  <- >>>>>MYB2<---------ANAC55(2)           --------->GLK1(1)  <------ZmHOX2a(1) --------------->AGL15 <-   accaaaaccatcaggtattacatttgaagttttgaattgtggaattctcaacgaggttcgaggaacatgaatttggttgctaactaaagcaacttgcttg  5298900                           --------->YAB1                      <------ZmHOX2a(1)                      --------------->AGL15        <---------ICU4              <---------ZAT14                                <---------------AGL15        --------->ATHB51              --------->ZAT18                          --------->ATHB51                --------->YAB1              --------->ZAT14                          <---------ICU4                  <--------HAHB4 --ANAC46 <---------ARR14(2)                          <---------YAB1           --------->ATHB12 ============================================================================MADS_MADS<---------YAB1 --ANAC58 --------->ARR14(2)       ------>ZmHOX2a(1)  --------->ICU4           <---------ICU4 --ANAC58 --------->MYB52(1)     <---------ICU4     --------->YAB1            <---------YAB1 <------- --------ANAC58      ----------->GT1                <---------ICU4     <---------ARR14(2)<---------YAB1 --------ANAC58     <---------TOE2(3)              <---------YAB1      --------->ARR14(2)--------->ICU4   tgcctgtgtgcataactggactgaggaaaaaataatccttacatgtccatttcatcataatttcattttgtagtatatgcatcattgtatcattatttcc  5299000                                                       --------->ZAT14                                                       --------->ZAT18                                                       <---------ZAT18                                                       <---------ZAT14                                                   ------->MYC2                                                   <-------MYC2                                                   <-------MYC3                                                   ------->MYC3                                                   ------->MYC4                                                   <-------MYC4                                                  <---------ANAC55(2)                                                  <--------ABF1                                                  --------->O2                                                  <---------O2                                                  <---------TGA1a                                                  --------->TGA1a                                                  <---------ANAC46                                                  --------->ANAC55(2)          ----------->GT1                                           <---------At4g35610              ------->TEIL                                           ----------->RAV1(2)              --------->MYB52(1)                                           --------->At4g35610           <---------ANAC55(2)                                       <-----------HVH21                 --------->ANAC55(1)      ---                             ------------>CBF  <<<<<<<GRF7               --------->ANAC58         ---     --------->ZAT6         --------->ANAC58  <-----------HVH21          --------->ANAC58         ---  <---------CCA1(2)         --------->ANAC58 ----------->HVH21           --------->ANAC55(2)      --- ----GT1 <---------ICU4 <-----------HVH21--------->ZAT18                 --------->ANAC46    --------   acttgtatcactaattccacttgaaatgtcacacaatatagggtcccctgacacgtgtgtactatgtagtttcacacgtaccggttaatatcgagattcc  5299100                                                           <---------YAB1                                                         <---------ICU4     --------->DAG2                                      --------->YAB1                   <----------    ---------->DOF2         --------->GLK1(2)  ---------->DOF2                          <---------HSFB2a(1) -------->GT1     <---------------AGL15      <---------------AGL15                      <---------HSFC1(2) ------>ANAC46    --------------->AGL15      --------------->AGL15                      --------->HSFB2a(1) ------>ANAC58    ===========================================MADS_MADS    --------->AHL20(2) ------>ANAC58   *TSS    <---------TOE2(3)   <---------HSFB2a(2)   <------ZmHOX2a(1)    --------->HSFC1(2) ->GLK1(2) ------------>CBF<---------GLK1(2) --------->HSFB2a(2) <---------TOE2(3) <---------LBD16   aagtaaaaaagtgaccaattctaaattaagaatctctctaatctcttcccaaagaagaatcatcactgaggaagaataaaacatttggggagtttcttcg  5299200                            ----------->RAV1(1)                <---------At4g35610                                  --------->YAB1                --------->At4g35610                                  <---------ICU4                <---------TGA1a                                     <---------YAB1                ===================================================bZIP_DOF             ----------->HVH21                                    --------->YAB1            <XXXXXXXXXXXXXXXXXXXXMIR398B/C                --------->WRKY38(1)            <-----------HVH21   --------->ANAC46          --------->WRKY12     --------->ALFIN1           --------->ALFIN1--------->ANAC46             <----------DOF2       <-------MYC3    ------>ZmHOX2a(1)    --------->YAB1        --------->ANAC58   <---------ICU4        --------->GLK1(2) -ARR10    <XXXXXXXXXXXXXXXXXXXXMIR398A        --------->ANAC58--------->YAB1 ------->MYC3       ----   ctaatccttcaaggtgtgacctgagaatcacaacacaaaacaatctcactcgaaattcctttgactcatcatcatcaccatgtggagaagaatcgtctcc  5299300                                                                    --------->ARR14(2)                                                                 --------->AtMYB61                                                                 --------->MYB46(3)                                                               ----------->RAV1(1)                                                              <---------ALFIN1                                                              --------->AtMYB61                                                            <---------ATERF1(1)                                                            ------>NtERF2                                                           --------->DEAR3(1)                                                           <---------ALFIN1                                                          --------->ATERF1(1)                                                          --------->ERF1                             <---------DEAR3(1)          ------>NtERF2                            <------NtERF2                <---------RAP2.6(3)               <------NtERF2                          <---------bZIP60(2)            <---------ATERF1(1)              ------>NtERF2                          --------->bZIP60(1)           >>>>>>>>>AtERF-4                  --------->LBD16                          <---------ANAC58              >>>>>>>>>AtERF-3                 --------->DREB2C(2)                    --------->DEAR3(1)                  --------->RAP2.3(3)              --------->RAP2.3(2)                   <------NtERF2                        >>>>>>>>>AtERF-1                 --------->RAP2.3(3)                  --------->LBD16                       <---------ATERF1(2)              --------->ATERF1(2)                  ------>NtERF2  <---------At4g35610    >>>>>>>>>AtERF-2                 --------->RAP2.6(2)                 --------->RAP2.3(2)                    --------->RAP2.3(2)              --------->DEAR3(1)                 --------->DEAR3(1)                     --------->ATERF1(2)              <---------ATERF1(2)                 --------->RAP2.6(2)                    --------->RAP2.6(2)              --------->RRTF1(2)                --------->ERF1<---------At4g35610       --------->DEAR3(1)               --------->ANAC46                --------->DEAR3(2)                      >>>>>>>>>AtERF-5                --------->ERF1  --------->At4g35610     <---------ANAC58              --------->ANAC46   <---------DEAR3(2)      <-  <---------At4g35610     <---------bZIP60(1)          --------->RAP2.3(1) <---------MYB46(3)  <-----  <---------ZAT2--------->RAP2.3(1)                    --------->ERF1   <-----------HVH21--------->RRTF1(3)  --------->ZAT2--------->MYB46(3)           --------->ETT(2)--------->MYB46(3)        <---------ATERF1(1) -->ZmHOX2a(1) <---------ATERF1(1)       ------>ZmHOX2a(1)<------NtERF2----------->HVH21--------->RAP2.3(1)   tctcagctcaaaaccctagccgccgatgtcgtcgctgcttctcctcgtcgatcgatagccgccaccaccagacctgtcggtttctatctcgccgccaatc  5299400                                                                                           ==========                                                                                           ------>ZmHOX2a(2)                                                                                          <------ZmHOX2a(2)                                                                                          ===========                                                                                          <---------GLK1(1)                                                                                          --------->GLK1(1)                                                                                         --------->AGP1                                                                                         --------->ARR14(2)                                                                                         <---------ARR14(2)                                                                                         <---------AGP1             ------->TEIL                                                                <---------ARR11(3)             --------->ARR14(2)                      <---------At4g35610                 --------->ARR11(3)             <---------ARR11(1)                      --------->At4g35610                 <-----------ARR10          --------->ANAC46                --------->At4g35610                           <---------At4g35610         <---------LBD16<---------MYB52(1)--------->ZAT2                                <---------CCA1(2)       --------->ARR14(2)                 <---------ZAT2                      --------->ANAC55(2)       <---------ARR14(2)                 <---------At4g35610  <---------ICU4 --------->ANAC58 -----ZmHOX2a(2)   <----------DOF2  <---------DEAR3(2)     <-------TEIL       --------->ANAC58 ------ ----ATHB12--------->LBD16        ---------->ID1   <-----------RAV1(2)        --------->ANAC46 <-----   gatcagccatttccgcatcttctttcgttatccctcgtcgtttcagctccgattcaggtgattcatcgttgctatagtttacgcattttcagatctcggc  5299500          --------->TOE1(2)          --------->TOE2(2)         ----------->RAV1(2)         <---------ANAC58         <---------ANAC58        -------->P         <-------TEIL                                                        <----- <------ZmHOX2a(1)        --------->ARR14(1)                                                 <------- =======HOX2a_HOX2a      --------->ARR11(1)                                   <-----------RAV1(1)<--- =======HOX2a_HOX2a      <---------GLK1(2)                     <---------ARR14(2) <------MYB83 <----- --->At4g35610         ----------->ARR10                       --------->ARR14(2) <------MYB46(1)<--- ----At4g35610--------->At4g35610<-----------GT1              <------ZmHOX2a(1)  <---------AtMYB61   tcaggactcttacctgcgctggaattagattcgattcactatgttttcttcatcgcatattagaggatagacttaaatctgtgttggtctcttagattgg  5299600  Previous    Next  AGI:  At3g15640.1    Description:  cytochrome c oxidase family protein. similar to cytochrome c oxidase family protein [Arabidopsis thaliana] (TAIR:AT1G80230.1); similar to unknown [Populus trichocarpa] (GB:ABK95853.1); contains InterPro domain Cytochrome c oxidase, subunit Vb; (InterPro:IPR002124) Range:  from: 5299117    to: 5301752    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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