Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                          <---------AHL20(1)                                        --------->AHL20(1)                                        --------->AHL20(2)         <---------ANAC58               <---------AHL20(2)                                       <---         <---------ANAC46           --------->ZAT6                                               ----         <---------ANAC58   --------->YAB1                                                      -----        <---------STY1(2) --------->ANAC58                                                      <----        --------->STY1(2) --------->ANAC46              --------->At4g35610            <---------DAG2     <---------ANAC58     --------->ANAC58          --------->TOE2(3)              <---------MYB52(1)     <---------ANAC58 <---------HSFB2a(2)      ------>ZmHOX2a(1)          <----------DOF2  ---------- --WOX13(1)           --------->HSFB2a(2)     --------->TOE2(3)       <---------CCA1(2)<----------DOF2   cttcttggctagcttgaaaaccttctccaagcatcttaacaataaattcctcaacatcagttggagccctgcttatctttccctcgttactttttcgcat  5199100                           --------->KAN4(2)                           <---------ARR14(2)                           --------->ARR14(2)                           <---------ARR11(3)                          <----------TaMYB80                          --------->GLK1(1)                          --------->HSFB2a(1)                          <---------GLK1(1)                          <---------KAN4(1)          --------->ARR14(2)          <---------ARR11(3)          <-----------ARR10--------->ARR11(3)          <---------ARR11(1)    --------->ANAC46      <---------HSFB2a(1)    --------->ANAC58     ---------->TaMYB80    --------->ANAC58     <---------KAN4(2) --------->ZAT14     <---------HSFB2a(2) ------ARR14(2)      --------->HSFC1(1)                        <----------DOF2 ----->ARR14(2)      --------->HSFB2a(2)                   <---------ANAC46 ---->GLK1(1)       <---------LBD16                        <---------ANAC58                     <---- -----CCA1(2)     --------->GLK1(2)                        <---------ANAC58                    ------ >ID1    <---------CCA1(2)--------->KAN4(1)           --------->MYB52(2)                    >>>>>>>ZML2   ttcttcactccatatctcagtttctggaatatcccttgagtttatcttcaatggtttagttgcttctttgggagcatttgatataggcctggttctagca  5199200                                                                                                -----                                                                                           --------->HSFB2a(1)                                                                                           <---------HSFB2a(1)                                                                                         --------->ARR14(2)                                                                                         <---------ARR14(2)             --------->ZAT6                                                         <---------ANAC46   ------>ZmHOX2a(1)  --------------->AtSPL3          --------->RAP2.6(2)           <---------ANAC58 -----ZAT18--------->YAB1                           ------>NtERF2   <----------DOF2 <---------ANAC58< --->YAB1 <---------ATHB12              <---------GLK1(2)     <----------DOF2 ------>ZmHOX2a(1)------   tactccttaccaataacacttgaaacagtaccatttgatatagaatttctcttcggcctccatactttcgctttgctatcctcttgtcgtggaacttcct  5199300                                                                                                   --                                                                                                  <--                                                                                               ------                             --------->At4g35610                                               ------                           <--------P                            <----------DOF2              -------                        <---------TOE1(3)                      <------NtERF2          --------->GLK1(2)                        <---------TOE2(3)                    <---------ANAC58         <-----------ARR10 ->ZmHOX2a(1)    <------MYB83<---------At4g35610             <---------ANAC46        <---------GLK1(2) ------ZmHOX2a(1)<------MYB46(1)                             <---------ANAC58<---------ZAT14  ------- --->TOE2(3)    <---------AtMYB61                <-----------HVH21           --------->ZAT14  -------   taggaacatagacctgagttggttttgaggttgctgtcttcatttcaacttggtcacattgaggcgtcttttcagccattgcagagagaatctcaccagc  5199400                            --------->At4g35610                 <---------ANAC58                 <---------ANAC58                <---------STY1(2)       --------->GLK1(2)    <---------At4g35610 ------->REM1(1)--------->ZAT2                                                         <---------At4g35610 -----TEIL      <---------ZAT2                                                         <---------HSFC1(2) --->ZAT2    <---------ANAC58                                               --------->ANAC58 --->At4g35610  --------->STY1(2) <------NtERF2                             --------->ANAC58 -->ANAC46   <---------ANAC58    --------->RAP2.6(2)                    <---------HSFB2a(2) -->ANAC58  <---------STY1(2)  --------->At4g35610                      --------->HSFB2a(2)       --- -->ANAC58  --------->STY1(2)  <---------At4g35610              ---------->DOF2        --------->HSFC1(2)   tacatcgacattctggctagcttggcagtaagcagcggcaatgtcatcaagagaaaaacgagaaccaaaagtatcgagaagcacttgtaagcttcttgaa  5199500                  <---------ANAC58                                            ----------->RAV1(1)                --------->ARR11(3)                                  <---------ANAC58      <---------YAB1                                   <---------ZAT18       --------->MYB46(3)   <------ZmHOX2a(2)                              <---------At5g28300  <------MYB46(1)  <---------ARR11(3)     <---------ATHB12        <-----------GT1    <---------ANAC58 <------ZmHOX2a(1)<---------ANAC58          <---------ATHB12        <---------ANAC46 ------>YAB1    <---------ARR11(3)    ------>ZmHOX2a(1)--------->ZAT14 <------MYB83      --------->AtLEC2   tcaggatcactattcgaagagcttgcaatctttgacattcctcccactaattcacagtgcaaaacaaatggcttggttaacaacagtagctatgcaaaat  5199600               --------->AHL20(2)               <---------AHL20(2)           --------->ATHB12                                                                  --------           ----------->GT1                                                               ------>ZmHOX2a(1)           --------->YAB1            --------->TOE2(3)                          <---------ATHB12-----          --------->ICU4             --------->YAB1                --------->DAG2  --------->At4g35610         <---------WOX13(1)          ------->GAMYB       --------->At4g35610  --------->WOX13(1)-----      <---------YAB1                --------->MYB46(3)   <---------At4g35610------------>CBF <-------    --------->At4g35610     --------->REM1(1)     ------->TEIL    ---------->DOF2--------->YAB1------   gtagaatgctgaatgattaaaatgttccctacattacaaccaaaatgttatgcatttgaagctgcaaaaaaagctagtttcaatcatcttcctaataacc  5199700                                       <---------YAB1                                     <---------ICU4        --------->ANAC58             --------->YAB1                                                <- ->YAB1 --------->ANAC58            --------->ICU4                             <------------CBF   --- ---->YAB1                   <---------ANAC46                             --------------->AGL15 ----- -->GAMYB                    <---------ANAC58         --------->WRKY18(1)--------->ANAC46 --------->MYB46(3) ----GT1--------->ANAC46     <---------ANAC58 --------->ZAT14 ------------>CBF<---------ICU4  <------ --->MYB46(3)  ---------->DOF2      <---------ATHB12 <--------ZAP1       <-----------------AGL1 -----   atcactgactacgaaactaaagcagaacatggcttgtaatcatgatactactctcggtcaaaatttcaatgctctacccaaaattgcatataacaaacac  5199800                                                           --------->ANAC58                                                           --------->ANAC58                                                       --------->ANAC46           --------->ARR11(3)                         --------->ZAT14   --------->ANAC58                               --------->ZAT6   --------->ANAC58                             <-----------GT1       --------->YAB1 ----------HVH21                               <---------ICU4    <---------ATHB12 -------->HVH21           ----------->GT1      --------->YAB1  --------->WOX13(1) ---->ZAT2 <---------ARR11(3)           --------->At4g35610--------->ANAC46 ---ALFIN1<---------CCA1(2)         --------->ARR14(2)<---------ZAT14<---------ATHB12    ---------->DOF2 ------>RAV1(2)    <------ZmHOX2a(2)<---------ARR14(2)<---------REM1(2)  ------>ZmHOX2a(2) ----------   ctggcaggcattatatctccgatctaagtagataaatggaactgctcaattatctctacacaagccaatcaatgatcgtttctgagagttctaaagtaat  5199900                                                                     ------->GAMYB                                                                    --------->ANAC58                                                                    --------->ANAC46                                                                    --------->ANAC58           <-----                                                            <---------ICU4                --------->YAB1                   ---------->DOF2                      ----------->GT1  --------->ICU4  <---------YAB1     --------->ANAC58     ---------->DOF2     <-----------GT1  --------->YAB1     --------->ANAC58     --------->ANAC58----------->GT1      <----------DOF2   --------->YAB1     --------->ARR14(2) ->GT1     <---------ATHB12              <---------DAG2<---------------------WRI1 --------->ANAC58   acaagtgaagcaaatcaatggcaaagtgaaaagtccaagaacacctttttactcggtatcgataatcacaacgcaattagggaaacgcattatcaaaacg  5200000  Previous    Next  AGI:  At3g15390.1    Description:  SDE5 (SILENCING DEFECTIVE 5). similar to PRLI-interacting factor, putative [Arabidopsis thaliana] (TAIR:AT5G58720.1); similar to UBA-like; HSC20, C-terminal oligomerisation [Medicago truncatula] (GB:ABD28681.2); contains InterPro domain Region of unknown function DUF1771 (InterPro:IPR013899) Range:  from: 5196696    to: 5199538    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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