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% Restriction to highly conserved TF binding sites (0-100)
 
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                         ------>ZmHOX2a(2)
    <---------AHL20(2)   ===========================HOX2a_HOX2a
   --------->AHL20(2)   ============================HOX2a_HOX2a
   <---------AHL20(2)  <---------AGP1
--------->ATHB12       --------->AGP1
-------->ICU4          <---------ARR11(3)                    <----------DOF2                    <---
--------WOX13(1)       --------->ARR11(3)              --------->YAB1   <---------ICU4   <---------AHL20(2)
----ANAC55(2) --------->YAB1                      <---------AHL20(2)   --------->ICU4   <---------AHL20(2)
--->ANAC55(2)<---------YAB1                  ------>ZmHOX2a(1)    --------->AtLEC2      <---------AHL20(1)
---LBD16    ------->TEIL<------ZmHOX2a(2)   --------->TOE2(3)--------->TOE2(3)          --------->AHL20(2)
-ARR14(2)--------->ANAC55(2)              <---------YAB1  --------->ARR11(3)           <---------ATHB12
>ARR14(2)<---------ANAC55(2)             <-----------GT1  <---------ARR11(3)   <XXXXXXXXXXXXXXXXXXXXMIR860
 
gattgattaaatatgtatcatagtaagatctatatttcaaaatttatccttatttcattaagaactttaatgcaaagattacatagtccaattaattttc  5121000
                      <---------AHL20(2)
                      --------->AHL20(2)
                  <---------AHL20(2)
                  --------->AHL20(1)
                  --------->AHL20(2)
                 --------->AHL20(2)
                 <---------AHL20(2)
              -------->HAHB4
              --------->ATHB51
              <---------ICU4
              <--------ATHB1
              <--------HAHB4      --------->YAB1
              --------->YAB1<------ZmHOX2a(2)
             <---------ATHB51    <---------ZAT6                         <---------AHL20(2)
             --------->AHL20(2)----------->GT1                     --------->YAB1<---------AHL20(2)
             --------->ICU4 --------->CCA1(2)                      --------->AHL20(2)
             <---------YAB1--------->AGP1                         <---------ATHB12
         --------->AHL20(2)<---------ARR14(2)                   --------->WOX13(1)      <---------CCA1(2)
         <---------AHL20(2)--------->ARR14(2)             ---------->DOF2 <---------TOE2(3)
         <---------YAB1---------->DOF2 ---------->DOF2   --------->AHL20(2)      --------->AHL20(2)
        --------->TOE2(3)  --------->ARR11(3)            <---------AHL20(2)   ------->TEIL      <---
------YAB1 --------->YAB1  <---------ARR11(3)     <---------AHL20(2)   --------->AHL20(2)------->TEIL
 
tcattgccaaatattaataattaaattaaagatccagtgataaaaagttttattttaaaattaaagtcaatcaaattaatgtatttaatttgtatctata  5121100
                                 --------->AHL20(1)
                                 <---------AHL20(2)
                                 <---------AHL20(1)
                                 --------->AHL20(2)
                           --------->TOE2(3)
                         <-------TEIL<-------TEIL
                    <---------AHL20(2)    --------->YAB1
                    --------->AHL20(2) --------->TOE2(3)                       ----------->GT1
                <---------DAG2  --------->AHL20(2)                        <------MYB83---------->DOF2
------AHL20(2)  <----------DOF2 <---------ATHB12            --------->DAG2<------MYB46(1)         --
 
tttttgacaatgtattcaactttttaaatacatcaataaattcattaataagatgatcaacaaaaattgaaaacgcttggtgaggttaaaaaagaaatga  5121200
                                            -------->ABF1
                                            <-------MYC3
                                            ------->MYC3
                                            <-------PIF5
                                            ------->PIF5
                                            <-------MYC4
                                            ------->MYC4
                                            <-------MYC2
                                            ------->MYC2
                                           --------->O2
                                           ==================bZIP_DOF
                                           --------->TGA1a
                                           <---------O2
                                           --------->ANAC55(2)
                                           <---------TGA1a
                                           ==================bZIP_DOF
                                           --------->ANAC46
                                  ----------->GT1
                                ---------->DOF2            --------->ALFIN1
                                =====================bZIP_DOF
                               <------ZmHOX2a(1)  ---------->DOF2
<--------P               ---------->DOF2   <---------ANAC55(2)       ---------->DOF2
--------->GT1            ============================bZIP_DOF  ----------->GT1  --------->AtLEC2
 
agggttgataagaaaaacaaaattctttgaaagaggaaagaaaaacacgtggcaaaagataagtggaggtaaaaaagaaaaccatgaaaaccgctggtgt  5121300
                                                        ---------->DOF2                          ---
                               --------->WRKY45     --------->RAP2.3(3)                          <--
                               --------->WRKY38(1)  ----------->RAV1(1)                        <----
                               --------->WRKY12   --------->ZAT18       <-----------GT1      -------
           --------->At4g35610 ----------->HVH21  <---------ZAT18    <---------DAG2        ---------
          --------->RAP2.6(2)<----------DOF2 ---------->DOF2         <----------DOF2     ------>ZmHOX2a(1)
 
tttgtaagagaagccgctaaaaccatttcaggctttgactgttcacaacaaagcgccccaaaaggagcgtcgcttttactctctctcccatcctatatat  5121400
                                             --------->AtMYB61
                                             <---------ALFIN1
                                            --------->MYB46(3)
                                          --------->AtMYB61
                                          <---------ALFIN1
                                       --------->ANAC46
                                       --------->ANAC58
                                       --------->ANAC58                                            -
------>ANAC46                        --------->YAB1                                                <
---------GT1                  --------->AHL20(2)                                                 ---
-----AHL20(2)               *TSS   <-----------HVH21                                    <---------ANAC58
---->TBP       ------>ZmHOX2a(1)  --------->WOX13(1)                  --------->LBD16   <---------ANAC58
-->TBP    <----------DOF2------------>CBF--------->MYB46(3)         <-----------------AGL1       ---
 
aaacaactctctcctttcctcttctcccttcaattatctatcacaccaccactctctctctaatctatctatccgagaatggccaagatgggcttgaaac  5121500
                                                                                                   <
                                                                                                   -
                                                                                                  <-
                                                                                                  --
                                                                                                  --
                                                                                                  <-
                                                                                             ------>ZmHOX2a(2)
                                                                                            --------
                                                                                            <------ZmHOX2a(2)
                                                                                           ---------
                                                                                           <--------
                                                                                           ---------
                                                                                           <--------
                                                                                          --------->GLK1(1)
                                                                                         -----------
                                                                                     <---------At4g35610
                                                                                     ------>NtERF2--
                                                                                    <---------ATERF1(2)
                                                                              <---------ARR14(2)  <-
                                                                              --------->ARR14(2)  --
                                                                              <---------MYB52(1) ---
                                        <---------ARR14(2)                   <-------GAMYB<---------GLK1(1)
                                        <---------GLK1(2)                    <---------RAP2.6(3) <--
                            <--------ATHB1                           ===============================HOX2a_HOX2a
                            <---------ICU4                           ==============================HOX2a_HOX2a
                            --------->YAB1<-------TEIL               ------>ZmHOX2a(1)<------NtERF2-
                           <---------ATHB12                          ===============================
                           --------->ICU4--------->ARR14(1)    <---------HSFC1(2)   --------->ATERF1(2)
           <---------MYB52(2)           --------->ARR14(2)     --------->HSFB2a(1)  --------->DEAR3(1)
   --------->LBD16    ----------->RAV1(1)--------->GLK1(2)     --------->HSFC1(2)<-----------RAV1(1)
 <---------LBD16   --------->PCF2      <---------HSFB2a(1)     <---------HSFB2a(1) <---------RAP2.6(2)
-------->ARR14(2)  <---------ARR14(2)  <---------GLK1(1)    <------ZmHOX2a(1)=======================
---------ARR14(2)  --------->ARR14(2) ----------->ARR10 <---------MYB52(1)  <---------MYB46(3) -----
-------->HVH21-------->P   <---------ATHB51           <---------ANAC58     <------NtERF2------>NtERF2
------>ANAC46<-----------GT1---------->DOF2           <---------ANAC58    ------>NtERF2--------->DEAR3(1)
 
ccgacccggctactactaaccagacccacaataatgccaaggagattcgttacagaggcgttaggaagcgtccttggggccgttatgccgccgagatccg  5121600
                                                          <-------MYC2
                                                          ------->PIF5
                                                          <-------PIF5
                                                          ------->MYC2
                                                          ------->MYC3        --------->ANAC55(2)
                                                          <-------MYC3        -------------->OsCBT
                                                          <-------PIF4        <---------ANAC58
                                                          ------->PIF4        <---------ANAC46
                                                         <------NtERF2        <---------ANAC55(2)
                                                         <---------ANAC46     <---------ANAC58
                                                         <---------ANAC58  <------NtERF2
                                                         <---------ANAC58  --------->ATERF1(1)
                                                         --------->ATERF1(1)<---------ANAC46
                                                        --------->ABI4(2) <---------DEAR3(2)
  --------->LBD16                                       ------>NtERF2     <---------ERF1
 <---------LBD16                                       <---------ANAC46   <---------ORA47(2)
<---------LBD16                                       --------->ATERF1(1) <---------RAP2.3(1)
------>ZmHOX2a(2)                                     <------NtERF2       ------>NtERF2
------ZmHOX2a(2)                                     ------>NtERF2 --------->ARR11(1)
-------->ARR14(1)                                    <---------ATERF1(1)  <---------DEAR4(2)
--------ARR14(3)                                     <---------RAP2.6(1)  <---------ATERF1(1)
------->ARR11(3)                                     <---------ERF1--------->ARR14(2)
------->ARR14(3)                                     <---------ORA47(2)   <---------RAP2.6(1)
--------ARR11(3)                                     <---------DEAR4(2)   <---------RRTF1(1)
->CCA1(2)                                            <---------RAP2.3(1) <---------RAP2.3(3)
>ARR14(2)                                            <---------RRTF1(1)  <---------RRTF1(3)
-ARR14(2)                                           <---------DEAR3(1)   <---------DEAR3(1)
>AGP1  --------->ANAC58                             <---------RAP2.6(2)  <---------RAP2.3(2)
-ARR11(3)                                           <---------RRTF1(3)   --------->DEAR3(1)
>ARR10 --------->ANAC58 <---------ANAC58            <---------RRTF1(2)   <---------RRTF1(2)
------->ARR14(2)        <---------ANAC46            <---------RAP2.3(3) --------->ATERF1(1)
--------ARR14(2)        <---------ANAC58            <---------RAP2.3(2) <---------ABI4(1)
------->AGP1     --------->O2                       --------->ALFIN1 --------->SPL7
------>GLK1(1)   --------->TGA1a            ----------->HVH21      <---------ARR14(2)  <---------ANAC58
-------GLK1(1) --------->ANAC46           --------->At4g35610    <---------YAB1        <---------ANAC58
-------->CCA1(2)--------->LBD16           <---------At4g35610<---------ANAC58 <------NtERF2
======HOX2a_HOX2a==========================bZIP_DOF--------->ATERF1(1) <---------RAP2.3(1)       <--
===========================MYC_MYB      <---------RAP2.6(2)  <---------ANAC58------>NtERF2       <--
---->LBD16    <---------LBD16   <----------DOF2    <---------ABI4(1)--------->CCA1(2)  <---------ANAC46
 
agatccgggcaagaaaacccgcgtctggcttggcactttcgatacggctgaagaggcggcgcgtgcttacgatacggcggcgcgtgattttcgtggtgct  5121700
                                                           <---------LBD16
                                                          <---------ANAC58
                                                          <---------ANAC46
                                                          <---------ANAC58
                                                       <---------ARR14(2)
                                                  ------>MYB46(1)                   --------->ANAC58
                            <---------ZAT2        -------->P<---------ANAC46        --------->ANAC58
                            <---------At4g35610   --------->MYB52(1)               <---------ZAT18
                            --------->At4g35610   ------>MYB83                    <---------ALFIN1
                            --------->ZAT2 --------->HSFB2a(1)                   --------->ZAT2
                        --------->HSFB2a(2)<---------HSFC1(2)                    --------->At4g35610
                        <---------HSFB2a(2)--------->HSFC1(2)           --------->STY1(2)
-------TOE2(3)     <---------DAG2          <---------HSFB2a(1)<----------CDC5 --------->ZAT14
-------TOE1(3)     <----------DOF2----------->HVH21    --------->ARR14(2)     --------->At4g35610
 
aaggctaagaccaatttcccaacttttctcgagctgagtgaccagaaggtccctaccggtttcgcgcgtagccctagccagagcagcacgctcgactgtg  5121800
                                                                                   <------NtERF2
                                                                                   <---------ZAT2
                                                                                  <---------MYB46(3)
                                                                                  <---------DEAR3(2)
                                                                                  <---------ERF1
                                                                                  ------>NtERF2
                                                                                  <---------RAP2.3(1)
                                                                                  <---------RAP2.6(1)
                                                                                  <---------DEAR4(2)
                                                                                  <---------RRTF1(1)
                                                                                  <---------ATERF1(1)
                                                                                 <---------DEAR3(1)
                                                                                 --------->DEAR3(1)
                                                                                 <---------RAP2.6(2)
                                                                                 <---------RAP2.3(3)
                                                                                --------->DREB2C(1)
                                                                                --------->DEAR4(2)
                                                                                <------NtERF2
                                                                                <---------DREB2C(1)
                                                                                --------->ATERF1(1)
                                                                                --------->RAP2.3(1)
                                                                                <---------At4g35610
                                                                               <---------DEAR4(2)
                                                                               <---------ERF1
                                                                               <---------RRTF1(1)
                                                                               <---------RAP2.6(1)
                                                                               ------>NtERF2
                                                                               <---------ATERF1(1)
                                                                               <---------RAP2.3(1)
                                                                               <---------ORA47(2)
                                                                              <---------RAP2.6(2)
                                                                              <---------RRTF1(3)
                                                                              --------->ATERF1(2)
                                                                              <---------RRTF1(2)
                                                                              <---------DREB2C(2)
                                                                              <---------RAP2.3(2)
                                                                              <---------RAP2.3(3)
                                                                              <---------ATERF1(2)
                                                                              <---------DEAR3(1)
                                                                              --------->ALFIN1
                                                   --------->ZAT2            --------->ATERF1(1)
                                                   --------->At4g35610       <---------ABI4(1)
                                        --------->KAN4(2)                    <------NtERF2
                                       --------->KAN4(1)                    <---------DEAR4(2)
                                       <---------HSFC1(2)                   <---------ATERF1(1)    =
             <-------GAMYB             --------->HSFC1(2)                   <---------RAP2.3(1)    -
            --------->MYB55(2)         --------->HSFB2a(1)                 --------->ALFIN1       ==
            --------->MYB52(2)         <---------KAN4(1)                   <---------DEAR3(1)     <-
            <---------MYB46(3)         <---------HSFB2a(1)                ==========================
          <---------MYB52(1)          <---------KAN4(2)                   --------->ATERF1(1)    ---
        --------->TGA1a         <---------ANAC46   <---------At4g35610    <------ZmHOX2a(1)      <--
        =============MYC_MYB   --------->ZAT2      <---------ZAT2         ==========================
        --------->O2           <---------ZAT2    <---------ALFIN1       --------->ALFIN1         ---
        <---------O2          ------>NtERF2     --------->LBD16        <------NtERF2             ---
        <---------TGA1a      <---------DEAR3(1)--------->ANAC46        --------->ATERF1(1)      <---
      ------>NtERF2       --------->DEAR3(1)   --------->ANAC58      <---------DEAR3(1)         ----
     ----------->HVH21    ----------->HVH21    --------->ANAC58     <---------LBD16--------->ATERF1(1)
     --------->DEAR3(1)  <---------At4g35610   <---------ALFIN1     <------NtERF2<---------RAP2.3(2)
   ------>ZmHOX2a(1)     --------->At4g35610  <---------LBD16     <---------DEAR3(1)    <---------ZAT6
 
cttctcctccgacgttagttgtgccttcagcgacggctgggaatgttcccccgcagctcgagcttagtctcggcggaggaggcggcggctcgtgttatca  5121900
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AGI:  At3g15210.1   
Description:  ATERF-4/ATERF4/ERF4/RAP2.5 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4); DNA binding / protein binding / transcription factor/ transcription repressor. Identical to Ethylene-responsive transcription factor 4 (ERF4) [Arabidopsis Thaliana] (GB:O80340;GB:O23107;GB:Q53XI2); similar to ATERF-8/ATERF8 (ETHYLENE RESPONSE ELEMENT BINDING FACTOR 4), DNA binding / transcription factor/ transcription repressor [Arabidopsis thaliana] (TAIR:AT1G53170.1); similar to ethylene responsive element binding factor 4-like protein [Thellungiella halophila] (GB:AAM19703.1); contains InterPro domain DNA-binding, integrase-type; (InterPro:IPR016177); contains Inte
Range:  from: 5121429    to: 5122569    Orientation: Forward
Links:  TAIR  MIPS 
 
 
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