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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
------>
ZmHOX2a(2)
<---------
AHL20(2)
===========================
HOX2a_HOX2a
--------->
AHL20(2)
============================
HOX2a_HOX2a
<---------
AHL20(2)
<---------
AGP1
--------->
ATHB12
--------->
AGP1
-------->
ICU4
<---------
ARR11(3)
<----------
DOF2
<---
--------
WOX13(1)
--------->
ARR11(3)
--------->
YAB1
<---------
ICU4
<---------
AHL20(2)
----
ANAC55(2)
--------->
YAB1
<---------
AHL20(2)
--------->
ICU4
<---------
AHL20(2)
--->
ANAC55(2)
<---------
YAB1
------>
ZmHOX2a(1)
--------->
AtLEC2
<---------
AHL20(1)
---
LBD16
------->
TEIL
<------
ZmHOX2a(2)
--------->
TOE2(3)
--------->
TOE2(3)
--------->
AHL20(2)
-
ARR14(2)
--------->
ANAC55(2)
<---------
YAB1
--------->
ARR11(3)
<---------
ATHB12
>
ARR14(2)
<---------
ANAC55(2)
<-----------
GT1
<---------
ARR11(3)
<XXXXXXXXXXXXXXXXXXXX
MIR860
gattgattaaatatgtatcatagtaagatctatatttcaaaatttatccttatttcattaagaactttaatgcaaagattacatagtccaattaattttc
5121000
<---------
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(1)
--------->
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(2)
-------->
HAHB4
--------->
ATHB51
<---------
ICU4
<--------
ATHB1
<--------
HAHB4
--------->
YAB1
--------->
YAB1
<------
ZmHOX2a(2)
<---------
ATHB51
<---------
ZAT6
<---------
AHL20(2)
--------->
AHL20(2)
----------->
GT1
--------->
YAB1
<---------
AHL20(2)
--------->
ICU4
--------->
CCA1(2)
--------->
AHL20(2)
<---------
YAB1
--------->
AGP1
<---------
ATHB12
--------->
AHL20(2)
<---------
ARR14(2)
--------->
WOX13(1)
<---------
CCA1(2)
<---------
AHL20(2)
--------->
ARR14(2)
---------->
DOF2
<---------
TOE2(3)
<---------
YAB1
---------->
DOF2
---------->
DOF2
--------->
AHL20(2)
--------->
AHL20(2)
--------->
TOE2(3)
--------->
ARR11(3)
<---------
AHL20(2)
------->
TEIL
<---
------
YAB1
--------->
YAB1
<---------
ARR11(3)
<---------
AHL20(2)
--------->
AHL20(2)
------->
TEIL
tcattgccaaatattaataattaaattaaagatccagtgataaaaagttttattttaaaattaaagtcaatcaaattaatgtatttaatttgtatctata
5121100
--------->
AHL20(1)
<---------
AHL20(2)
<---------
AHL20(1)
--------->
AHL20(2)
--------->
TOE2(3)
<-------
TEIL
<-------
TEIL
<---------
AHL20(2)
--------->
YAB1
--------->
AHL20(2)
--------->
TOE2(3)
----------->
GT1
<---------
DAG2
--------->
AHL20(2)
<------
MYB83
---------->
DOF2
------
AHL20(2)
<----------
DOF2
<---------
ATHB12
--------->
DAG2
<------
MYB46(1)
--
tttttgacaatgtattcaactttttaaatacatcaataaattcattaataagatgatcaacaaaaattgaaaacgcttggtgaggttaaaaaagaaatga
5121200
-------->
ABF1
<-------
MYC3
------->
MYC3
<-------
PIF5
------->
PIF5
<-------
MYC4
------->
MYC4
<-------
MYC2
------->
MYC2
--------->
O2
==================
bZIP_DOF
--------->
TGA1a
<---------
O2
--------->
ANAC55(2)
<---------
TGA1a
==================
bZIP_DOF
--------->
ANAC46
----------->
GT1
---------->
DOF2
--------->
ALFIN1
=====================
bZIP_DOF
<------
ZmHOX2a(1)
---------->
DOF2
<--------
P
---------->
DOF2
<---------
ANAC55(2)
---------->
DOF2
--------->
GT1
============================
bZIP_DOF
----------->
GT1
--------->
AtLEC2
agggttgataagaaaaacaaaattctttgaaagaggaaagaaaaacacgtggcaaaagataagtggaggtaaaaaagaaaaccatgaaaaccgctggtgt
5121300
---------->
DOF2
---
--------->
WRKY45
--------->
RAP2.3(3)
<--
--------->
WRKY38(1)
----------->
RAV1(1)
<----
--------->
WRKY12
--------->
ZAT18
<-----------
GT1
-------
--------->
At4g35610
----------->
HVH21
<---------
ZAT18
<---------
DAG2
---------
--------->
RAP2.6(2)
<----------
DOF2
---------->
DOF2
<----------
DOF2
------>
ZmHOX2a(1)
tttgtaagagaagccgctaaaaccatttcaggctttgactgttcacaacaaagcgccccaaaaggagcgtcgcttttactctctctcccatcctatatat
5121400
--------->
AtMYB61
<---------
ALFIN1
--------->
MYB46(3)
--------->
AtMYB61
<---------
ALFIN1
--------->
ANAC46
--------->
ANAC58
--------->
ANAC58
-
------>
ANAC46
--------->
YAB1
<
---------
GT1
--------->
AHL20(2)
---
-----
AHL20(2)
*
TSS
<-----------
HVH21
<---------
ANAC58
---->
TBP
------>
ZmHOX2a(1)
--------->
WOX13(1)
--------->
LBD16
<---------
ANAC58
-->
TBP
<----------
DOF2
------------>
CBF
--------->
MYB46(3)
<-----------------
AGL1
---
aaacaactctctcctttcctcttctccc
ttcaattatctatcacaccaccactctctctctaatctatctatccgaga
atggccaagatgggcttgaaac
5121500
<
-
<-
--
--
<-
------>
ZmHOX2a(2)
--------
<------
ZmHOX2a(2)
---------
<--------
---------
<--------
--------->
GLK1(1)
-----------
<---------
At4g35610
------>
NtERF2
--
<---------
ATERF1(2)
<---------
ARR14(2)
<-
--------->
ARR14(2)
--
<---------
MYB52(1)
---
<---------
ARR14(2)
<-------
GAMYB
<---------
GLK1(1)
<---------
GLK1(2)
<---------
RAP2.6(3)
<--
<--------
ATHB1
===============================
HOX2a_HOX2a
<---------
ICU4
==============================
HOX2a_HOX2a
--------->
YAB1
<-------
TEIL
------>
ZmHOX2a(1)
<------
NtERF2
-
<---------
ATHB12
===============================
--------->
ICU4
--------->
ARR14(1)
<---------
HSFC1(2)
--------->
ATERF1(2)
<---------
MYB52(2)
--------->
ARR14(2)
--------->
HSFB2a(1)
--------->
DEAR3(1)
--------->
LBD16
----------->
RAV1(1)
--------->
GLK1(2)
--------->
HSFC1(2)
<-----------
RAV1(1)
<---------
LBD16
--------->
PCF2
<---------
HSFB2a(1)
<---------
HSFB2a(1)
<---------
RAP2.6(2)
-------->
ARR14(2)
<---------
ARR14(2)
<---------
GLK1(1)
<------
ZmHOX2a(1)
=======================
---------
ARR14(2)
--------->
ARR14(2)
----------->
ARR10
<---------
MYB52(1)
<---------
MYB46(3)
-----
-------->
HVH21
-------->
P
<---------
ATHB51
<---------
ANAC58
<------
NtERF2
------>
NtERF2
------>
ANAC46
<-----------
GT1
---------->
DOF2
<---------
ANAC58
------>
NtERF2
--------->
DEAR3(1)
ccgacccggctactactaaccagacccacaataatgccaaggagattcgttacagaggcgttaggaagcgtccttggggccgttatgccgccgagatccg
5121600
<-------
MYC2
------->
PIF5
<-------
PIF5
------->
MYC2
------->
MYC3
--------->
ANAC55(2)
<-------
MYC3
-------------->
OsCBT
<-------
PIF4
<---------
ANAC58
------->
PIF4
<---------
ANAC46
<------
NtERF2
<---------
ANAC55(2)
<---------
ANAC46
<---------
ANAC58
<---------
ANAC58
<------
NtERF2
<---------
ANAC58
--------->
ATERF1(1)
--------->
ATERF1(1)
<---------
ANAC46
--------->
ABI4(2)
<---------
DEAR3(2)
--------->
LBD16
------>
NtERF2
<---------
ERF1
<---------
LBD16
<---------
ANAC46
<---------
ORA47(2)
<---------
LBD16
--------->
ATERF1(1)
<---------
RAP2.3(1)
------>
ZmHOX2a(2)
<------
NtERF2
------>
NtERF2
------
ZmHOX2a(2)
------>
NtERF2
--------->
ARR11(1)
-------->
ARR14(1)
<---------
ATERF1(1)
<---------
DEAR4(2)
--------
ARR14(3)
<---------
RAP2.6(1)
<---------
ATERF1(1)
------->
ARR11(3)
<---------
ERF1
--------->
ARR14(2)
------->
ARR14(3)
<---------
ORA47(2)
<---------
RAP2.6(1)
--------
ARR11(3)
<---------
DEAR4(2)
<---------
RRTF1(1)
->
CCA1(2)
<---------
RAP2.3(1)
<---------
RAP2.3(3)
>
ARR14(2)
<---------
RRTF1(1)
<---------
RRTF1(3)
-
ARR14(2)
<---------
DEAR3(1)
<---------
DEAR3(1)
>
AGP1
--------->
ANAC58
<---------
RAP2.6(2)
<---------
RAP2.3(2)
-
ARR11(3)
<---------
RRTF1(3)
--------->
DEAR3(1)
>
ARR10
--------->
ANAC58
<---------
ANAC58
<---------
RRTF1(2)
<---------
RRTF1(2)
------->
ARR14(2)
<---------
ANAC46
<---------
RAP2.3(3)
--------->
ATERF1(1)
--------
ARR14(2)
<---------
ANAC58
<---------
RAP2.3(2)
<---------
ABI4(1)
------->
AGP1
--------->
O2
--------->
ALFIN1
--------->
SPL7
------>
GLK1(1)
--------->
TGA1a
----------->
HVH21
<---------
ARR14(2)
<---------
ANAC58
-------
GLK1(1)
--------->
ANAC46
--------->
At4g35610
<---------
YAB1
<---------
ANAC58
-------->
CCA1(2)
--------->
LBD16
<---------
At4g35610
<---------
ANAC58
<------
NtERF2
======
HOX2a_HOX2a
==========================
bZIP_DOF
--------->
ATERF1(1)
<---------
RAP2.3(1)
<--
===========================
MYC_MYB
<---------
RAP2.6(2)
<---------
ANAC58
------>
NtERF2
<--
---->
LBD16
<---------
LBD16
<----------
DOF2
<---------
ABI4(1)
--------->
CCA1(2)
<---------
ANAC46
agatccgggcaagaaaacccgcgtctggcttggcactttcgatacggctgaagaggcggcgcgtgcttacgatacggcggcgcgtgattttcgtggtgct
5121700
<---------
LBD16
<---------
ANAC58
<---------
ANAC46
<---------
ANAC58
<---------
ARR14(2)
------>
MYB46(1)
--------->
ANAC58
<---------
ZAT2
-------->
P
<---------
ANAC46
--------->
ANAC58
<---------
At4g35610
--------->
MYB52(1)
<---------
ZAT18
--------->
At4g35610
------>
MYB83
<---------
ALFIN1
--------->
ZAT2
--------->
HSFB2a(1)
--------->
ZAT2
--------->
HSFB2a(2)
<---------
HSFC1(2)
--------->
At4g35610
<---------
HSFB2a(2)
--------->
HSFC1(2)
--------->
STY1(2)
-------
TOE2(3)
<---------
DAG2
<---------
HSFB2a(1)
<----------
CDC5
--------->
ZAT14
-------
TOE1(3)
<----------
DOF2
----------->
HVH21
--------->
ARR14(2)
--------->
At4g35610
aaggctaagaccaatttcccaacttttctcgagctgagtgaccagaaggtccctaccggtttcgcgcgtagccctagccagagcagcacgctcgactgtg
5121800
<------
NtERF2
<---------
ZAT2
<---------
MYB46(3)
<---------
DEAR3(2)
<---------
ERF1
------>
NtERF2
<---------
RAP2.3(1)
<---------
RAP2.6(1)
<---------
DEAR4(2)
<---------
RRTF1(1)
<---------
ATERF1(1)
<---------
DEAR3(1)
--------->
DEAR3(1)
<---------
RAP2.6(2)
<---------
RAP2.3(3)
--------->
DREB2C(1)
--------->
DEAR4(2)
<------
NtERF2
<---------
DREB2C(1)
--------->
ATERF1(1)
--------->
RAP2.3(1)
<---------
At4g35610
<---------
DEAR4(2)
<---------
ERF1
<---------
RRTF1(1)
<---------
RAP2.6(1)
------>
NtERF2
<---------
ATERF1(1)
<---------
RAP2.3(1)
<---------
ORA47(2)
<---------
RAP2.6(2)
<---------
RRTF1(3)
--------->
ATERF1(2)
<---------
RRTF1(2)
<---------
DREB2C(2)
<---------
RAP2.3(2)
<---------
RAP2.3(3)
<---------
ATERF1(2)
<---------
DEAR3(1)
--------->
ALFIN1
--------->
ZAT2
--------->
ATERF1(1)
--------->
At4g35610
<---------
ABI4(1)
--------->
KAN4(2)
<------
NtERF2
--------->
KAN4(1)
<---------
DEAR4(2)
<---------
HSFC1(2)
<---------
ATERF1(1)
=
<-------
GAMYB
--------->
HSFC1(2)
<---------
RAP2.3(1)
-
--------->
MYB55(2)
--------->
HSFB2a(1)
--------->
ALFIN1
==
--------->
MYB52(2)
<---------
KAN4(1)
<---------
DEAR3(1)
<-
<---------
MYB46(3)
<---------
HSFB2a(1)
==========================
<---------
MYB52(1)
<---------
KAN4(2)
--------->
ATERF1(1)
---
--------->
TGA1a
<---------
ANAC46
<---------
At4g35610
<------
ZmHOX2a(1)
<--
=============
MYC_MYB
--------->
ZAT2
<---------
ZAT2
==========================
--------->
O2
<---------
ZAT2
<---------
ALFIN1
--------->
ALFIN1
---
<---------
O2
------>
NtERF2
--------->
LBD16
<------
NtERF2
---
<---------
TGA1a
<---------
DEAR3(1)
--------->
ANAC46
--------->
ATERF1(1)
<---
------>
NtERF2
--------->
DEAR3(1)
--------->
ANAC58
<---------
DEAR3(1)
----
----------->
HVH21
----------->
HVH21
--------->
ANAC58
<---------
LBD16
--------->
ATERF1(1)
--------->
DEAR3(1)
<---------
At4g35610
<---------
ALFIN1
<------
NtERF2
<---------
RAP2.3(2)
------>
ZmHOX2a(1)
--------->
At4g35610
<---------
LBD16
<---------
DEAR3(1)
<---------
ZAT6
cttctcctccgacgttagttgtgccttcagcgacggctgggaatgttcccccgcagctcgagcttagtctcggcggaggaggcggcggctcgtgttatca
5121900
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AGI:
At3g15210.1
Description:
ATERF-4/ATERF4/ERF4/RAP2.5 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4); DNA binding / protein binding / transcription factor/ transcription repressor. Identical to Ethylene-responsive transcription factor 4 (ERF4) [Arabidopsis Thaliana] (GB:O80340;GB:O23107;GB:Q53XI2); similar to ATERF-8/ATERF8 (ETHYLENE RESPONSE ELEMENT BINDING FACTOR 4), DNA binding / transcription factor/ transcription repressor [Arabidopsis thaliana] (TAIR:AT1G53170.1); similar to ethylene responsive element binding factor 4-like protein [Thellungiella halophila] (GB:AAM19703.1); contains InterPro domain DNA-binding, integrase-type; (InterPro:IPR016177); contains Inte
Range:
from: 5121429
to: 5122569
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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