Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                    <---------ANAC46                                               --------->ALFIN1                                             --------->ALFIN1                           >>>>>>>>>>AGL24                                             <-----------RAV1(1)                        >>>>>>>>>>AGL22                                         --------->ANAC55(1)                            >>>>>>>>>>AGL20                                         --------->ANAC58                           <----------------                                         <---------ANAC55(2)                        -----------------                                         --------->ANAC58                           <----------------                                        <---------LBD16                             -----------------                                      <---------ARR14(2)             --------->ANAC58<---------------AGL15                                      --------->ARR14(2)             --------->ANAC58--------------->AGL15 ------->DOF2 --------->ALFIN1      ----------->HVH21     ---------->DOF2       ---------->DOF2 -DOF2  ---------->DOF2      ---------->DOF2<---------ARR14(2)      --------->SPL7 ----------->GT1   aaaagaacagaaaagagtgggagaaaactgtgaaagaccagacacggatgtggctgaaacaaaagaagcgtaagcctaagaagaaagctaaatatgggaa  5076300                                                                                        <---------AtMYB61 -AGL3       --------->YAB1                                              --------->GLK1(2)        --- >AGL3      <---------ATHB12                      ----------->RAV1(2)   --------->ARR14(2)        <-- -AGL2   --------->AtMYB61          <---------ATHB12              >>>>>>>>>MYB2  ---------->DOF2 <--- >AGL2  --------->MYB46(3)        --------->WOX13(1)     <---------ZAT14<---------GLK1(2)  ----------   caacgcttccaccaatgacaatccaattgtttgaatcaatcagcgagagcaaacctgactaaacagaaaaccaagaatcgctgaaaagttttggtcgttt  5076400                                                                                          -----------                                                                                          <---------ZAT6                                                                                         <---------YAB1           >>>>>>>>>ARR2                                                               --------->ATHB51          --------->ATHB12                                                             -------->ATHB1         <---------YAB1      <---------DEAR3(1)                                       <---------YAB1 <----------DOF2         <-----------RAV1(2)                                      <---------ANAC55(2) ------->ID1           <-----------HVH21                                       <------ZmHOX2a(2) ---------GT1 --------->KAN4(2)<------NtERF2                                  --------->ARR11(3) --------GT1<---------WOX13(1)--------->At4g35610                  <-----------GT1--------->ANAC55(2) >ID1<----------DOF2 --------->At4g35610                 --------->YAB1       <---------ARR11(3)   ttcctttctttttgattgttctcagcatcaggcgctgcatccaaatgtactatcgtctattacaatgttataccagattagatcatgtattattgttaaa  5076500                                                                    =================================                                <---------At4g35610                 <-------GAMYB                               <---------TOE2(3)                  <---------TOE2(3)                  <---------MYB46(3) <---------ATHB12             <---------YAB1       <-------TEIL <---------ARR14(2)                    ---------->ID1                    ---------  --------->AHL20(2)--------->ARR14(2)               <---------MYB52(1)                  --------->ARR14(2) >GT1 <-----------GT1   --------->LBD16          <---------ZAT14 <---------At5g28300  --------->AtMYB61   caaaaaatatacatttttggaggttccgaaattaagctaatcgttcttgagttcagttttgtccaattacggttgaacattgtagaaaccaaaacctcta  5076600                 --------->ZAT14                                                           --------->ANAC58                 <---------ZAT14                                                           <---------ANAC55(2)                 --------->ZAT18                                                           --------->ANAC58            <---------ARR14(2)                                                          --------->WRKY18(1)    --------->TGA1a                           <---------ZAT14                       --------->ZAT14    --------->ANAC46                  <---------MYB52(1)                        <---------------AtSPL8    <---------bZIP60(1)             <------MYB46(1)         <---------ANAC55(2)<---------AtLEC2    --------->bZIP60(1)             <------MYB83          --------->AHL20(2)   <---------ANAC58   === =============MYC_MYB--------->ICU4--------->MYB59   <---------MYB52(1)        <---------ANAC46   --- >TOE2(3)   --------->ARR14(2)   <---------MYB52(1)----------->GT1             <---------ANAC58 *TSS   cttctcacatcacatatactgtactgatcaaatcggttcggtttggagtaaaccggttaattacataaaactctagaggttgcatgtacagtcaagtaaa  5076700               ----------------------->TaNAC69(2)              --------->ANAC58              --------->ANAC58              --------->RAP2.6(2)            ------>NtERF2           <---------SPL7         <---------LBD16         <---------At4g35610<---------O2         --------->At4g35610--------->TGA1a                                           --------->GLK1(2)       ===============================MYC_MYB                                        <---------ARR14(2)       ---------->CDC5      --------->ANAC58                                         <---------GLK1(2)      ================================bZIP_DOF                                  --------->ANAC58      <----------DOF2       <---------TGA1a --------->ARR14(2)                  --------->ANAC58     <---------ARR14(2)     --------->bZIP60(2)   --------->REM1(2)   --------->MYB52(1)     --------->ARR14(2)     --------->O2 <---------ANAC58--------->ANAC58   --------->ANAC58    <---------RAP2.6(3)   <---------ALFIN1 <---------MYB52(1)   --------->TOE1(3)    --------->ARR14(2)   --------->RAP2.6(2)  ------>NtERF2    <---------ANAC58--------->ANAC58   --------->ANAC58 =====================================bZIP_DOF <---------ANAC46 --------->TOE2(3)  ----------->ARR10 ------->DOF2--------->SPL7 --------->ANAC58<---------ARR14(2)------------------------>ANAC81   caaagccgctctgcggacgcaaatgctgccacgtcttcaatttccgtttctgtgtaaacaagaaaacctaaaaaacagaagcaagcagattctcgcatca  5076800                                                                           --------->At5g28300                                                                          ----------->GT1                                                                        <---------ZAT18                                                                        --------->ZAT18                                                                        <---------LBD16                                                                        --------->LBD16       <------MYB46(1)                                                                       <---------ANAC58       <------MYB83                                                                 <------ZmHOX2a(2)    <---------ZAT2                                                                 <---------YAB1       --------->ZAT2                                                     <---------ANAC58  <---------ANAC58      <-------                 <------ZmHOX2a(1)                   <---------ANAC58  <---------ANAC46     <--------             ---------->DOF2             --------->MYB52(1)     <---------ARR11(3)   --------->ALFIN1         >>>>>>>>>TBF1       --------->ATHB12    --------->CCA1(2)--------->ATHB12  <---------MYB52(1)      >>>>>>>>>TBF1        <---------WOX13(1)    <---------GLK1(1)<---------ICU4 <---------LBD16<<<<<   >>>>>>>>>TBF1<----------ID1          ----------->HVH21       --------->ARR11(3) --------->LBD16  <   acgaagaagaagaagaaaaggacgagtagattgatttcttagacgacggagaaatgcgagtgatgagatcattgcgcggtaattccggtgctggattggt  5076900       <------NtERF2       --------->ATERF1(1)      ------>NtERF2      <---------ATERF1(1)     --------->ATERF1(2)     --------->DEAR3(1)                                                                        ------     <---------ATERF1(2)                                                                      <------     <---------DEAR3(1)                            <---------ANAC46           --------->LBD16 <------    --------->SPL7                               --------->ZAT14             <---------HSFB2a(2)    --------->ATERF1(1)                          <---------ZAT14             --------->HSFB2a(2)-----   ------>NtERF2                                 --------->ZAT2             <---------LBD16   <------  --------->LBD16                              <---------RAP2.6(3)         --------->PCF5     -------  ------>NtERF2                               <---------ANAC46           <---------MYB46(3)  <-------  <---------SPL7                              <---------ANAC58           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <---------RAP2.6(2)                          <---------ANAC58          <---------AtMYB61 <---------GLK1(1) --AtMYB61                                <--------P                 <---------AtMYB61    --------->ZAT2 -WOX13(1)              <---------LBD16  <---------MYB52(1)<-----------GT1<---------SPL7  <---------At4g35610 <<<<MYB2  ----------->GT1          <-----------GT1----------->GT1 <----------DOF2        --------->At4g35610 ---------LBD16  <---------GLK1(2)<----------DOF2<---------ZAT2 <---------ALFIN1          <---------ZAT2   tttccggccggcgaggttaaattctcttcggagcgtctttaccggttgccgtgctgtgattttgccccgctttggtggtccggaggtttttgagctccgg  5077000                <---------ARR14(2)                --------->GLK1(2)                --------->ARR14(2)                <---------ARR11(1)                XXXXXXXXXXXXXXXXXXXX>MIR865-5P        --------->LBD16      <---------LBD16   --------->KAN4(2)  --------->KAN4(1)  --------->HSFC1(2)  --------->HSFB2a(1)  <---------KAN4(1)  <---------HSFC1(2)                   <-----------HVH21  <---------HSFB2a(1)               <---------ANAC58 <---------KAN4(2)                  <---------ANAC58 --->LBD16      ------->TEIL       <-------TEIL ---LBD16   <------NtERF2         --------->ARR11(3)                        <---------ZAT14 ---HSFB2a(2)  <---------GLK1(2)  <---------ARR14(2)         <---------MYB52(1) ---->LBD16------>NtERF2----------------->AGL3     --------->At4g35610  --------->ATHB12 ---ANAC46--------->ALFIN1        --------->ARR14(2)        <-------GAMYB <---------WOX13(1)     <--- -->HSFB2a(2)  <---------ARR14(1) --------->GLK1(2)<---------At4g35610 <---------YAB1 <---------ZAT6 --LBD16<---------At4g35610    <---------TOE2(3)---------->DOF2     ------>ZmHOX2a(1) ----------->GT1   gagaatgttccggtgccgaatctgaatccaaatgaggttcttgtcaaggcgaaagctgtctccgttaatcctcttgattgcagagtgagtgttaatctgc  5077100                                                   <XXXXXXXXXXXXXXXXXXXXMIR832-3P                                                   <---------------AGL15                                                   --------------->AGL15                                                   <----------DOF2                                                   <---------DAG2                                                  <-----------------AG                                                  <---------ANAC58                                                  <---------ANAC58                           ------>ZmHOX2a(2)                                                  <-----------------AGL3                     ========                                                  <-----------------AGL2                    <--------                                                  <-----------------AGL1                   <---------ARR11(3)                                    <---------ARR11(3)                                <---------ANAC46                                   <---------CCA1(1)                                  <---------ANAC58                                   --------->CCA1(1)                              <---------MYB52(1)                                   <---------RVE1(1)                           ------>ZmHOX2a(2)                                   --------->RVE1(1)                       ----------->HVH21---------                                   <---------GLK1(1)                     <---------ANAC58  --------->ARR11(3)                                  --------->ARR11(3)                     <---------ANAC46  <---------AGP1        <---------YAB1--------->ATHB12  <---------LBD16                  <---------ANAC58 <---------CCA1(2)     <---------MYB52(1)           <---------ARR11(3)               --------->ATHB12   <---------ANAC58  ------>ZmHOX2a(2)  <---------YAB1--------->GLK1(1)              <---------YAB1<---------MYB46(3) ------WOX13(1)   <---------AHL20(2)--------->ARR11(3)            <---------TOE2(3)  <---------ZAT2   ttgatccgttttgatttcattttatgagtggcattagatatcttcggagattgctttatttgggaattaagattggcgtgatcggttagcttggatctct  5077200  Previous    Next  AGI:  At3g15080.1    Description:  exonuclease family protein. similar to exonuclease [Arabidopsis thaliana] (TAIR:AT3G27970.1); similar to exonuclease family protein [Arabidopsis thaliana] (TAIR:AT5G40310.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39353.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337); contains InterPro domain Exonuclease; (InterPro:IPR006055); contains InterPro domain Exonuclease, RNase T and DNA polymerase III (InterPro:IPR013520) Range:  from: 5074223    to: 5076531    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g15090.1    Description:  oxidoreductase, zinc-binding dehydrogenase family protein. similar to oxidoreductase, zinc-binding dehydrogenase family protein [Arabidopsis thaliana] (TAIR:AT1G23740.1); similar to Os01g0753100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044271.1); similar to hypothetical protein OsJ_003392 [Oryza sativa (japonica cultivar-group)] (GB:EAZ13567.1); contains InterPro domain Alcohol dehydrogenase GroES-like (InterPro:IPR013154); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040); contains InterPro domain GroES-like (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149); contains Range:  from: 5076696    to: 5079124    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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