Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                              ---------                                                                                            <--------                                                                                            <------MYB46(1)                                                                                            <------MYB83                                                                                           --------->MYB52(2)                                                                               --------->ANAC58                                                                               --------->ANAC58                                                                              <-------TEIL --------->MYB46(2)                                                                             --------->ARR14(1)                                                                             --------->CCA1(2)                                                                            --------->ARR14(2)                                                                            <---------GLK1(2)                                                                            <---------ARR14(2)                                                                            --------->ARR11(1)                                                 <-------TEIL              <---------HSFC1(2)                                              --------->ZAT2               <---------HSFB2a(1)                                              <---------ZAT2               --------->HSFB2a(1)                                              --------->At4g35610          --------->HSFC1(2)                                              <---------At4g35610         ----------->ARR10--------->MYB59                           XXXXXXXXXXXXXXXXXXXXX>MIR831              <---------At4g35610  <---------MYB55(1)                     ----------->GT1<---------ALFIN1                 --------->At4g35610 <---------MYB52(1)               =========================HOX2a_HOX2a               ----------->RAV1(2)   --------->TOE2(3) -TEIL         <------ZmHOX2a(2) ------>ZmHOX2a(1)       <----------DOF2<---------At4g35610--------->MYB111(1)   tcactgtatggccttggatcagcgagttaaatctcctcgcactcttcaagctgcatagtctttttctcgcctgcagaagattcgcaacaacgttaggtaa  5067600                                                                                                  ---                                                                                                  <--                                                                                                  <--                                                                                                  ---                                                                                                 ----                                                     <---------YAB1                 <---------At4g35610      ----------->GT1          --------->TOE2(3)  <----------DOF2               --------->At5g28300 -->GT1--------->At5g28300     --------->TOE1(3) <---------DAG2              <---------LBD16   ------ -ANAC55(2)            <----------ID1       ---------->DOF2     --------->MYB52(1)  --------->At4g35610   aattggagcggtaaataagtggaaaatgacaaaccttgaatgctcgaaaagccttttgaatgcgaataacagcgacttctacggtaagcttagtagaagc  5067700                                                        <-----------GT1                                                     --------->YAB1  --------->ARR11(3)                                 <---------ICU4                      ---------->DOF2 ------>ZAT2                                      ------>MYB46(1)           --------->ANAC46 -------ZAT2                                    <---------MYB111(1)     <---------At4g35610 -------At4g35610               <---------TOE2(3) ------>MYB83          --------->At4g35610 ------>At4g35610        --------->ANAC58       <---------MYB59  ---------->DOF2 --------->ANAC58 ------->RAV1(1)         --------->ANAC58     ------->TEIL <---------AHL20(1)    --------->ANAC58 --->At4g35610      ----------->HVH21     --------------->AtSPL8<---------AHL20(2) ---------->DOF2   agcagagcttgattcaaccggtttgacacggtttgatgtttcagaatgtacctaataataacatatttaaagtcatctacgacaagaaagaaaaagagaa  5067800                                                                                          <------ZmHOX2a(2)                                                                                         --------->ARR14(2)                                                                                 --------->MYB46(3)                                                                              --------->ATERF1(1)                                                                             <---------ZAT2                                                                             --------->ZAT2                                                                    <---------WOX13(1)   <---------ARR11(3)                                                                  --------->ATHB12       <---------ARR14(2)                                                                 <---------YAB1--------->RAP2.3(3)                                                               <---------At4g35610    --------->HSFB2a(2)                         <---------ANAC46               --------->REM1(2)    --------->At4g35610                   <---------TOE2(3)                 <---------ANAC58        <---------ATERF1(1)                   <---------TOE1(3)                 <---------ANAC46   <---------At4g35610                  --------->MYB52(1)                 <---------ANAC58   --------->At4g35610------>ZmHOX2a(2)                <---------MYB52(2)            <----------DOF2  --------->At4g35610  --------->AtLEC2              --------->ZAT6            ---------->ID1 <---------MYB52(1)    <---------At4g35610-----   tgaaacagagtttttttcactaacgttgcctcgatttgatttgttcttctttgttccgtttagacagatgattgagcggagcagccatccagatcccata  5067900                                                                    --------->GLK1(2)                                                                    <---------ARR14(2)                                                                    --------->ARR14(2)            ---                                                                    --------->ARR11(3)          -----                                                                    <---------ARR11(3)        <------                                                                   *TSS                   <---------GLK1(2)                              <-------TEIL                 --------->YAB1           <-----------GT1                             --------->GLK1(2)            --------->ICU4           <---------AHL20(2)                   <---------TOE2(3)  --------->At4g35610 <---------YAB1           --------->AHL20(2) ---->MYB52(1)   ---------->DOF2   ---------->DOF2     <---------MYB52(1)  ------------>CBF   <------   acagaagactggctcagtttaaaggtaagagattcagaacagcacaatgttttatcggttatgatcacaaaatctggctcaatatttaactagattatgt  5068000                                                                      --------->AHL20(2)     --------->CCA1(2)                                              --------->ANAC58    --------->ARR11(3)                                   <---------ANAC58    <---------ARR11(3)                                   <---------ANAC46 ------->DOF2            <----------DOF2                 <---------ANAC58                  <---------HSFC1(2) ------>HVH21  <---------YAB1     --------->ANAC46      --------->ATHB12                   --------->HSFC1(2) ---ANAC55(2) <---------AHL20(2)  <---------TOE2(3)<---------TOE2(3)--------->ANAC58   <---------REM1(1) ---ANAC46   --------->YAB1   <----------DOF2----------->GT1<---------MYB46(3)      --------->ALFIN1   gaaagagatatgagattataatgtgttctttgttttaaggcacaagaaggtttaatgttgagtggttttcaagtaaatgagagagagtgttgaagcttcg  5068100                                          --------------->AGL15                                          --------->MYB46(3)                                          <---------------AGL15                                          <---------MYB55(2)                                         --------->ANAC58                                         --------->ANAC58                                         --------->ANAC46                                         <-----------------AGL1                                        <-----------------AGL1                                        <-----------------AG    <-----------GT1                                       <-----------GT1 --------->ALFIN1                            <---------MYB46(3)       <------MYB83  <----------DOF2                  <               <-----------GT1<---------WOX13(1)     <------MYB46(1)                     <---------At4g35610       ----------->GT1      --------->ATHB12        <---------AtMYB61                <---------DEAR3(1)  <----------DOF2          <---------YAB1----------------->AGL1<-----------GT1       --------->ALFIN1   ctctctttgtggtgaataaacccatcttggtgattgacatttcacccaatggggaaggtgttgttttatcttttcttcaaattcaaggtggtgctgtttc  5068200                                                                                                   <-                                                                                              -------                                                                                   --------->AHL20(1)                                                   ----------->ARR10               <---------AHL20(1)                                               <------ZmHOX2a(1)                   --------->AHL20(2)                                             <---------TOE2(3)                    --------->AHL20(2)                           <---------ANAC46--------->MYB52(1)          ----------->GT1       --------     <---------YAB1  <---------TOE2(3)     ---------->DOF2  ---------->DOF2       <---------AHL20(2)-     <---------AHL20(2)>>>>>>>>>ARR2 <------ZmHOX2a(2)<---------WOX13(1)      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    <---------AHL20(2) >>>>>>>>>ARR1 =================HOX2a_HOX2a <------ZmHOX2a(1)<---------AHL20(2) ---------RVE1(1)    <---------YAB1  ====================================HOX2a_HOX2a         <-------   tgatatttttattagtttaggctaagattgtggagaccgatcaaataaaggatgagattggcaaaagaggatgatgtaaaacaaataaattttcaaccat  5068300                                                                <---------ANAC55(2)                                                                --------->ANAC55(2)                                                               --------->MYB52(1)                                                               <---------LBD16                                                              --------->CCA1(2)                                                            --------->ZAT2                                                         <xxxxxxxxxxxxxxxxsmallRNA(s)                   --------->ANAC46                    ----------->RAV1(2)                   --------->ANAC58                    ------>MYB46(1)        <xxxxxxxxxxxxxxxxsmallRNA(i)                   <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)        <xxxxxxxxxxxxxxxxsmallRNA(s)                   <xxxxxxxxxxxxxxxxsmallRNA(le3)        --------->ATERF1(1)                           <xxxxxxxxxxxxxxxxxxsmallRNA(se3)        <------NtERF2                                 <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       ------>NtERF2--------->LBD16                   --------->MYB52(1)       --------->LBD16                                <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      <---------ANAC46        <---------At4g35610     <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)      --------->ALFIN1------>NtERF2                   <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <---------DEAR3(1)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------ZAT2     <------NtERF2--------->TOE1(2)                  ------->GAMYB----------->HVH21    --------->LBD16--------->ANAC58                  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    ------>NtERF2 <xxxxxxxxxxxxxxxxsmallRNA(le3)     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)   <xxxxxxxxxxxxxxxxsmallRNA(s)                     --------->MYB46(3)  --------->ATERF1(1)----------->HVH21             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <---------LBD16 <---------LBD16            ------->GAMYB  --------->At4g35610 ----------HVH21<---------ARR14(2)         ------>MYB83------>MYB83       *TSS -->ATHB12<xxxxxxxxxxxxxxxxsmallRNA(s)     ------>MYB46(1)<xxxxxxxxxxxxxxxxsmallRNA(i) ->MYB46(3) <xxxxxxxxxxxxxxxxsmallRNA(i)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) -------->PCF5  --------->ARR14(2)        --------->MYB52(1)<---------At4g35610 --ATHB12<---------PCF2------>NtERF2     --------->AtMYB61<xxxxxxxxxxxxxxxxsmallRNA(s)        <------   tggtcccggcggggctcgaacccgcgaccttcggctcataagaccaacgctctaaccaactgagctacgggacctgtttgaatattatgttccatacttt  5068400                                           <-----------GT1                                         --------->AHL20(2)                                   <---------TOE2(3)                                 <---------AHL20(2)               <---------YAB1    --------->AHL20(2)                         --------->AHL20(2)            <---------YAB1      <---------ATHB12                            --------->AHL20(1)      <----------DOF2           --------->ICU4                              <---------AHL20(1)      <---------DAG2        ------------>CBF <---------ICU4                 <---------AHL20(2)   ---------->ID1     ------>ZmHOX2a(1)  <---------AHL20(2)                --------->AHL20(2)       <  <-----------GT1     <----------DOF2--------->AHL20(2)     <---------GLK1(2)                       - ----DOF2   <---------AHL20(2)--------->WOX13(1)  <---------YAB1           <---------AHL20(2)<-------   tatttctccttttttttattaatcctttttagcaattaatgaattaaacattactattcccaaattcttgcatccaaataaatttccaaattcaactttg  5068500  Previous    Next  AGI:  At3g15050.1    Description:  IQD10 (IQ-domain 10); calmodulin binding. similar to IQD9 (IQ-domain 9), calmodulin binding [Arabidopsis thaliana] (TAIR:AT2G33990.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39370.1); contains InterPro domain IQ calmodulin-binding region (InterPro:IPR000048) Range:  from: 5066886    to: 5067967    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g15055.1    Description:  pre-tRNA. tRNA-Ile (anticodon: TAT) Range:  from: 5068301    to: 5068374    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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