Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                               --------                                                                                            ---------                                                                                           --------->ANAC46                                                                                        --------->MYB46(3)                                                                                        ------>ZmHOX2a(2)      --------->ANAC46                                                                 <------ZmHOX2a(2)     ------->TEIL                                      ---------->DOF2         <---------ANAC58     --------->SPL7                                --------->GLK1(1)           <---------ANAC58 --------------->AtSPL8                   --------->AtMYB61              <-------TEIL <---------ARR14(2) <---------------AtSPL3                  <---------MYB52(2)           ------>MYB46(1) --------->ARR14(2) -----CCA1(2)         ---------->DOF2<---------At5g28300              ------>MYB83<------------------ --------------->TaNAC69(2) --------->GLK1(1)   --------->LBD16  <-----------GT1<---------SPL7     --   ttctctgtacgtctccatcgcatccaaaggagacccatttaccacaaacccagaaatcaaagcgttgtaaccaaatacatcgcgttcggatccaccaaag  4951000                                                              --------->ALFIN1                                                             <-------PIF5                                                             ------->MYC2                                                             ------->PIF5                                                             <-------MYC2                                                             <-------MYC3                                                            <---------TGA1a                                                            ==================================bZIP_DOF                                                            <---------ANAC46                                                            --------->ALFIN1                                                            <---------ANAC58                                                            <---------ANAC58                                                           ------>NtERF2                                                          <---------ANAC46                                                         <------NtERF2                                                         --------->ATERF1(1)                                                        <---------RRTF1(1)                                                        <---------ATERF1(1)                                                        ------>NtERF2                                                        <---------ERF1                                                        <---------DEAR4(2)                                                        --------->LBD16                                                        <---------ORA47(2)                                                        <---------RAP2.3(1)                                                       <---------DREB2C(2)                                                       <---------RRTF1(2)             <------NtERF2                             <---------RAP2.3(2)             ------>NtERF2                             <---------RAP2.3(3)            --------->DEAR3(1)                         --------->ATERF1(2)         --------->ANAC58                              <---------ATERF1(2)       <---------ALFIN1                                <---------DEAR3(1)      --------->ZAT14                                  --------->DEAR3(1)      <---------SPL7                                  --------->ATERF1(1)      <---------ZAT18                              ------->PIF5      --------->ABI4(1)                            <-------MYC2      <---------ATHB12     --------->DEAR3(1)                            <-------PIF5  <---------ANAC58    --------->ANAC46                               ------->MYC2  <---------ANAC46  <---------ALFIN1                <-------TEIL     ------->MYC3  <---------ANAC58  <----------DOF2 ------>MYB83--------->LBD16    <---------ZAT18    <-------MYC3 <------NtERF2 --------->GLK1(1) -------->P--------->RAP2.3(1) <---------ANAC46   <---------ANAC58   --------->HSFB2a(1) ------>MYB46(1)               <---------ANAC58   <---------ANAC58   --------->HSFC1(2) -->DOF2 --------->ANAC58      <---------ANAC58  ------------>OsbHLH66       --------->ARR14(2) >AtMYB61--------->ANAC46     --------------->AtSPL3  --------->DEAR3(2)   --------->LBD16 ---WRI1--------->SPL7  <---------ALFIN1         <-------TEIL------->MYC3 <---------HSFB2a(2) ------->AtMYB61      --------->AtMYB61  <---------DOF5.7(2)<------NtERF2 --------->HSFB2a(2)   accaacaccgcacgccgcatgagaccacacttagcgtacatgttaacgaggctcgtgccggcgcgtggcgaatcatccagaaacccttttctaaccatga  4951100                     --------->ANAC58                     <---------ANAC55(2)                     --------->ANAC55(1)                  <---------ARR14(2)                 <------NtERF2                --------->LBD16               --------->RAP2.6(2)              <---------LBD16          <---------MYB52(1)        <-----------RAV1(1)           <---------ZAT18                                   <---------CCA1(2)       ------>ZmHOX2a(2)              <---------ZAT14                                  ------->TEIL     --------->ARR14(2)            <---------ANAC46                                    --------->ARR14(2)     <---------ARR14(2)     ----------------------->TaNAC69(2)                         <---------ARR11(1)     --------->ARR11(3)    <---------ICU4                                              <-----------ARR10     <---------AGP1  --------->ANAC55(2)                                               <---------ARR14(2)     <---------ARR11(3)   --------->ICU4                        <---------REM1(1)     <---------CCA1(2)    <---------CCA1(2)--------->ANAC58 --------->ZAT14        <-------TEIL    --------->ALFIN1  --------->ALFIN1--------->ARR14(2)  --------->ZAT18 --------->ALFIN1----------->RAV1(1)    <------- --------->LBD16<------NtERF2    <---------At4g35610<-----------RAV1(1)      <-----------RAV1(1)   aaccgtggatctgttggccggaaacgtaatctttgcgctgtgcacagcgttgcaatgtggcgatacatgtagcaacattgtggtgctcgtatctcttcgg  4951200                                                                                              -------                                                                                            *TSS                                                                                           <---------GLK1(1)                                                                                    --------->ALFIN1                                                                                   --------->LBD16                                                                                   <---------LBD16                                                                                  <---------ANAC58                                                                     --------->AHL20(2)    --------->GLK1(1)                                                              --------->TOE1(2)<---------ARR14(2)                                                             <---------At4g35610  <---------ANAC46                                                             --------->At4g35610  <---------ANAC58                                        ---------->DOF2<----------DOF2         --------->ARR14(2) --LBD16                       ---------->DOF2--------->At4g35610<---------ANAC46 <---------ANAC55(1)   gttttcttcgatttgcccagaaacagtcgaatataaagatgctaaagcagaagaaggctttatagctgcgaataaatctgggttccgtgggagaaatctc  4951300                                                                                     <---------ANAC58                                                                                     --------->ANAC55(2)                                                                                     <---------ANAC46     --------->LBD16                                                                 <---------ANAC55(1)     ------>NtERF2                                                      <---------YAB1    <---------RAP2.6(2)        --------->LBD16                         --------->AHL20(1)    <---------LBD16           <---------ANAC46                         <---------AHL20(1)    <---------HSFB2a(2)      ------>ZmHOX2a(2)                         <---------AHL20(2)   --------->RAP2.6(3)      <------ZmHOX2a(2)                         --------->AHL20(2)   <---------ZAT6   <---------LBD16         --------->ARR14(2)                         --------->YAB1 <---------ANAC55(2) --------->GLK1(2)         <---------ARR14(2)                     <---------YAB1     <---------ANAC58 -->TOE2(3)          ------->TEIL            --------->At5g28300<---------ALFIN1   <-----------GT1   aaaattccggcagaacaattttgaatctcgatccgtagaaacgagacggtcattgttttagttccaccacgattatatttgaaatttacgtgagtgtgag  4951400                                                         <---------ANAC58                               ----------->GT1   ----------->TBP                          --------->MYB52(2)     <---------AHL20(2)                       <----------DOF2           <---------YAB1                          ------------                    --------->ARR11(3)           --------->AHL20(2)                      <-----------                    <---------ARR11(3)      <---------ATHB12                            <------------                 --------->AHL20(2)     --------->AHL20(2)                              <------------                 <---------AHL20(2)     ------------>CBF <---------ANAC58          <----------DOF2               XXXXXXXXXXXXXXXXXXXX>MIR1886.2--------->YAB1                 <---------ARR14(2)            --------->AHL20(2)----------->GT1--------->AHL20(2)             --------->ARR14(2)   tgagacttgcataagaaaataaaatctttagttgggaaaaaattcaataatataaatgggcttgagaaggaagcgagggataggcctttttctaaaatag  4951500                                                       ----------->RAV1(2)                          <                                                       --------->ZAT2                               -                                                       --------->At4g35610                         <-                                                       <---------At4g35610                         <-                                             ---------->DOF2                              <---------WOX13(1)                                         --------->MYB59                                 <----------- --->AGL15              ---------->DOF2  <---------TOE2(3)     <-----------TBP          --------->ATHB12 ----AGL15         --------->YAB1      <---------MYB52(1)      --------->AHL20(2)      --------->ICU4 -----AGL2    ------------>CBF        <----------CDC5  <---------ZAT2                  <---------ZAT6 -----AGL1   <-----------GT1   <---------ALFIN1  ---------->DOF2                       <---------YAB1   gcccatttaagctattaacaatcttcaaaagtaccacagcgcttaggtaaagaaagcagctgagtttatatatggttagagacgaagtagtgattgtccc  4951600                                                                              xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                              xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                           <---------HSFB2a(2)                                                                          <xxxxxxxxxxxxxxxxsmallRNA(s)                                                            xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                          --------->YAB1 xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                          xxxxxxxxxxxxxxxxx>smallRNA(si3)                                                         xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                        --------->ANAC58 xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                        --------->ANAC58 xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                      xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                    --------->ANAC58     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                    --------->ANAC46     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                    --------->ANAC58     xxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                   xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                  xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                 xxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                 ------->PIF5         <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                ----------->RAV1(2)   <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                <------NtERF2        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                --------->ATERF1(1)  xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                               xxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                               xxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                               xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                             xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                             xxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                            xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                            xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxx>smallRNA(si3)                                           xxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                           xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                           xxxxxxxxxxxxxxxx>smallRNA(i)  xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                          xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxxxxx>smallRNA(si3)                                     <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  xxxxxxxxxxxxxxxxx>smallRNA(se3)                                    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                  <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                  ----------->ARR10xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                  <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                 xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                <xxxxxxxxxxxxxxxxsmallRNA(i)----------->HVH21xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                              xxxxxxxxxxxxxxxxxx>smallRNA(se3)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                              xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                              xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                             xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                             <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <---------ANAC55(2)                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) --------->ANAC46                          <xxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxx>smallRNA(fl3)                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   --------->ANAC58                  xxxxxxxxxxxxxxxxx>smallRNA(si3)<-------PIF5xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)              <---------AHL20(2)<xxxxxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)             --------->AHL20(2)<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->ANAC58           <xxxxxxxxxxxxxxxxsmallRNA(i)   xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)          <--------          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          --------->AHL20(2)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    <XXXXXXXXXXXXXXX        <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------AtLEC2--------->ICU4 xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      <XXXXXXXXXXXXXXX     --------->GLK1(1)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    ----------->ARR10    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    ---------->TaMYB80  xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   ------>NtERF2 xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxx>smallRNA(i)      <XXXXXXXXXXXXXXX --------->LBD16<------------CBFxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ---------HSFB2a(2)    --------->ANAC58xxxxxxxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) -------->HSFB2a(2)    --------->ANAC58xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)xxxxxxxxxxxxxxxxxx>smallRNA(si3) --------LBD16xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)xxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <xxxxxxxxxxxxxxxxsmallRNA(i) --------ANAC46xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <---------AHL20(2) -CBF<---------GLK1(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxx>smallRNA(se3)   ttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcataaatcgagaaatggtccaaattttttt  4951700                                                        <---------ANAC55(2)                        --                                                        <---------ANAC58                          ---                                                        ----------->GT1                     ---------                                                        <---------ANAC46                  <---------LBD16                         --------->At4g35610            <---------ANAC58              <-----------ARR10                         <---------At4g35610         <---------MYB52(1)               --------->GLK1(2) -AHL20(2)        <-----------GT1                <-----------GT1 <---------YAB1       <---------ARR14(2) XXXXXMIR399D <---------RVE1(1)                 <-----------GT1--------->YAB1         --------->ARR14(2) XXXXXMIR399A--------->ARR11(3)     <---------LBD16<---------ANAC58                  <---------CCA1(2) XXXXXMIR399E<---------GLK1(2)   <---------GLK1(1) <---------ANAC58                  <---------GLK1(1)   tggcaaaaattttcagattttttcttcatctgtagatttctgggtttttttttccgtttcgtgaatcataagtgaagttttggatgcaaatctgcgcgaa  4951800                                                                                                    -                                                                                                  ---                                                                                                 ----                                                                                                <----                                                                                               ------                                                                                               ------                                                                                               <-----                                                                                              -------                                                    <-------GAMYB                            <------NtERF2                                                   --------->MYB52(2)                        --------                                                   <---------MYB46(3)                       <--------                                               <------MYB83                                 <--------                                               <------MYB46(1)        <-----------HVH21     <-------- ------->DAG2                                <---------WOX13(1)     <---------WOX13(1)     <---------DEAR3(1) ------->DOF2                              --------->ATHB12      <---------YAB1        <---------HSFB2a(2) >LBD16                               ---------->DOF2<---------MYB52(1)                --------->HSFB2a(2)   aaaagttggacctgcaatgagcttatttagatagctaagacaaagtgattggtccgttgtttcagttctgattgtcagagagtttgtttcgagacggcga  4951900  Previous    Next  AGI:  At3g14730.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G23330.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66913.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 4949392    to: 4951353    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g14735.1    Description:  U6-1; snRNA. gi|16516|emb|X52527.1|ATSNU61 Arabidopsis thaliana U6-1 snRNA gene Range:  from: 4951292    to: 4952084    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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