Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                        -------->HAHB4                                      --------->YAB1                                      <---------ICU4                                  --------->AHL20(2)                                  <---------AHL20(2)                                 --------->AHL20(1)                                 --------->AHL20(2)    <---------ZAT2                                 <---------AHL20(2)    --------->ZAT2                            ------>ZmHOX2a(1)          <---------At4g35610                           --------->TOE2(3)        <---------At4g35610                         <------ZmHOX2a(2)          --------->At4g35610                        --------->ARR14(2)     --------->YAB1                                    ----                        --------->ARR11(3)     <---------ICU4                          --------->ANAC58                        <---------ARR11(3)    <---------YAB1                           --------->ANAC58                      ----------->ARR10  --------->YAB1--------->At4g35610<----------ID1       <-----        --------->ARR14(2)------>ZmHOX2a(2)   --------->ICU4  --------->GLK1(2)    --------->ANAC58     --------->MYB46(3) <---------ARR14(2)<-----------TGA1   <---------GLK1(2)     --------->ANAC58 <---------ATHB12  --------->ALFIN1--------->YAB1--------->At4g35610 ---------->DOF2 ---------->DOF2   cccatcaacaaatctacagatgtgtagatcctaaatttaataatcgtcatcatcagcagctcagaatctaataaagagaacaaaaacgaaagcacttcca  4594600                       ----------->GT1                     --------->MYB52(1)            <------ZmHOX2a(2)           <---------ARR11(3)                         ---------->DOF2   --------->MYB52(1)       --------->MYB52(1)                       --------->ANAC46    <---------ARR11(1) ----->ANAC46------>ZmHOX2a(2)              <---------ATHB12       ------>MYB46(1)              ----- ----ALFIN1--------->ARR11(3)  --------->YAB1  --------->At4g35610 ------>MYB83         <----------ID1   cagcaaaaaaaacgatcttgaagtaacgaaaaatcaaaacttccaaatcaactcaacaaagttgaaaccaaatctatcggaaaacacaaaaaaacaaatc  4594700                                   ---------->DOF2                               --------->YAB1                               ----------->GT1                                 --------->GLK1(2)                          <---------YAB1                                       <---------ARR14(2)                        <---------ICU4                                         ------->TEIL   <------MYB83         --------->DAG2 --------->YAB1                                  <------ZmHOX2a(1)     <------MYB46(1)        ---------->DOF2--------->ICU4                          <---------ARR14(2)            -------- --------->KAN4(1)     <---------ATHB12                        --------->ARR14(2)<---------LBD16 <---------KAN4(1)   --------->WOX13(1)          <---------ARR11(3) <---------MYB52(1)  ---------->DOF2 ---->YAB1   ---------->DOF2 ------->TEIL<-------TEIL          --------->GLK1(2)----------->RAV1(2)   agaacaatccaaaagtaaagaaacaatcatgaatcgtaaaagttacatcgagataatagatagacaatccgataggatgcgaacctggagcaaagttggt  4594800                                                     ------->TEIL                                                 ------>ZmHOX2a(2)                                               <---------ARR14(2)                                ------->TEIL   --------->ARR14(2)                               <---------CCA1(2)--------->At4g35610                          <---------ZAT2       <---------AGP1                     <---------LBD16           <-----------ARR10                    <---------LBD16        <---------LBD16                                     <-----       ---------->DOF2    --------->At4g35610 <---------CCA1(2)            ---------->DOF2     <----- ->MYB59      <----------DOF2  <---------GLK1(2)<------ZmHOX2a(2)  <xxxxxxxxxxxxxxxxsmallRNA(i)<-----   aagcgagagtaaagggcttttttcagggagcttgaatctcccaaactcggatctgaaccgcgttgagagagagagagcaaagagaagagcgaagattgcg  4594900                 ---------->DOF2                --------->LBD16               --------->ANAC46              ----------------->AG            --------->ARR14(2)            <---------ARR14(2)                                                             <---------           <---------KAN4(1)                                                        <---------ARR14(2)           <----------TaMYB80                                                       --------->ARR14(2)           --------->KAN4(1)                                                        <-----------ARR10           <---------HSFB2a(1)                                                      <---------ARR11(3)          ---------->TaMYB80                                            <-----------------AGL1    <--          <---------KAN4(2)                      --------->AHL20(2)  *TSS           --------->ARR11(3) ----ANAC58--------->GLK1(1)           --------->DOF5.7(2)        <---------TOE2(3)--------->GLK1(1) ----ANAC46--------->HSFB2a(1)  --------->ARR14(2)                <---------TOE1(3)<---------GLK1(1) ----ANAC58<---------GLK1(1)    <---------ARR14(2)            <----------DOF2<----------DOF2 <-------   agagactggtggaatatccgaaagaggctgagagaaaacgcgttaccttgtttatatactccgtctttagggttttctcctttggaaatcttctcctttt  4595000                       <----------DOF2                  <-----------GT1            --------->LBD16          <---------LBD16       <---------GLK1(1)       --------->GLK1(1)      --------->ARR14(2)            <----------DOF2      <---------ARR14(2)    <-----------GT1  <---------LBD16 <---------At5g28300                 ----------->HVH21 ---------------ANAC81 <---------DAG2   <-----------GT1                     <---------At4g35610 --------DOF2    <-----------GT1<----------DOF2    <---------ANAC46         --------->At4g35610 ---DOF2<---------ARR14(2) <-----------GT1   <----------DOF2          <---------ALFIN1   ctttttcggatttccggttttacccctttattccctttctttttactcttttggctcggacaaggttttccaacacttagctcattgtcttaacttgatt  4595100                                                                                             <-------                                                                             --------->AHL20(1)                    <---------ARR11(3)                                       --------->ARR11(3)                    --------->ARR11(3)                                       <---------ARR11(3)   <--                   --------->RVE1(1)                                  ---------->DOF2        --------           --------->AHL20(2)                                      --------->ANAC58      <---------AHL20(2)        --------->AHL20(2)         --------->MYB59                 --------->ANAC58      --------->AHL20(2)       <---------AHL20(2)        --------->ICU4        --------->AHL20(2)    <---------AHL20(1)   <--       --------->AHL20(2) <---------ZAT6               <---------AHL20(2) --------->AHL20(2) <-------     --------->YAB1--------->CCA1(1) <------ZmHOX2a(1)--------->AHL20(2)----------->GT1 --------->AHL20(2)   ttggcaaaaataaataaacaaatatctagtgggaaattaggaacataaattcttcatttattttgtgactagcaaagaaaatattcttcatttattttat  4595200                                                   ---------->DOF2                                      <---------DAG2       ---------->DOF2                <----------DOF2                                      --------->DAG2 <----------DOF2                     <---------ANAC58                        --------->ARR14(2) --AHL20(1)                          <---------ANAC58    <----------TaMYB80  <---------ARR14(2) ---------GT1          ------>ZmHOX2a(1)    <---------TOE2(3)                <---------ARR11(3) ->AHL20(2)          ----------->RAV1(2)   <-----------GT1     --------->LBD16            ---------->DOF2 -------AHL20(2)<----------DOF2<---------YAB1--------->bZIP60(1)             --------->ARR11(3)  <--- --AHL20(2) <----------DOF2  <----------DOF2<---------TOE1(3)<---------LBD16<------ZmHOX2a(1)    <---   tttcttttccaaagctttctttctcctgcaacttttattgctttttgacgttacaaagcattttcccgattacaacgaggatattagaagaataaagtga  4595300                                                                                  <---------HSFB2a(2)                                                                                  --------->HSFB2a(2)                                                                         <---------AHL20(2)                                    <-----------GT1                    <---------ANAC55(2)                               --------->ICU4                          --------->ANAC55(2)                              --------->ANAC55(2)                    --------->YAB1                --                          <----------DOF2                            <---------ICU4                <- ------ANAC46          <---------ARR11(3)                           <---------ATHB12               -- ------WOX13(1)        --------->ARR11(3)                        <---------AHL20(2)        --------->CCA1(2)   ctgataagaacgttttatctgaaaatgtctttacttattaacacatctatctctctatgttgaatgtttaatcatgtaattgttccacaagtgatatgaa  4595400            --------->ANAC58            --------->ANAC58  --------->TOE2(3) ------->ARR14(2)                            --------->STY1(2) --------ARR14(2)                            <---------STY1(2) ------->GLK1(2)                     ----------->GT1       --------->At4g35610                <------   gaatccttgaaacgaagcaaaacacattgagtaagaagaaggtaactagctagtatgaagaagcagcaagttgctatctatcttcaacaaaaaatgcttt  4595500  Previous    Next  AGI:  At3g13920.1    Description:  EIF4A1 (eukaryotic translation initiation factor 4A-1); ATP-dependent helicase. Identical to Eukaryotic initiation factor 4A-1 (TIF4A-1) [Arabidopsis Thaliana] (GB:P41376;GB:Q0WWD9;GB:Q546P0;GB:Q8LBZ6;GB:Q8RXF3;GB:Q94CM1); similar to eukaryotic translation initiation factor 4A, putative / eIF-4A, putative [Arabidopsis thaliana] (TAIR:AT1G72730.1); similar to EIF4A-2 (eukaryotic translation initiation factor 4A-2), ATP-dependent helicase [Arabidopsis thaliana] (TAIR:AT1G54270.1); similar to Eukaryotic initiation factor 4A-11 (ATP-dependent RNA helicase eIF4A-11) (eIF-4A-11) (GB:Q40465); similar to Eukaryotic initiation factor 4A-2 (ATP-depend Range:  from: 4592263    to: 4594969    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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