Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                --------->TOE1(2)              --------->TOE2(2)             <---------ANAC55(2)                  <---------AHL20(2)             --------->ANAC55(2)           --------->ANAC46            <---------TOE2(3)              --------->ANAC58           --------->MYB52(1)           <---------ZAT18         <---------MYB52(2)             --------->ZAT18               --------->ANAC46      <---------ZAT14            --------->ANAC58<---------AHL20(2) <-----------GT1      --------->ZAT14            --------->ANAC58<---------AHL20(1)<---------ZAT14              -----      --------->ZAT18           --------->TOE1(2)--------->AHL20(2)--------->ZAT14        <---------ANAC58    --------->bZIP60(1)     <----------ID1 --------->ANAC58       <---------DAG2<---------HSFB2a(2)    <---------bZIP60(1)  --------->DAG2 <---------ZAT14           <----------DOF2         <---------ANAC58 ----------->HVH21      ---------->DOF2 --------->ZAT14       <---------ZAT18   --------->HSFB2a(2)   atggtgacagcactaacgtaagaagaaaaaggaacaagcgaatgcactcaattaatttgtattgctcactttactccattttctacaaaatgggttgtct  4549200                                                                                                -----          -------->ZAP1                                                                   --------->YAB1        <---------WRKY18(1)                                                              <---------ATHB12       ----------->HVH21                                                               ------>MYB46(1)       --------->WRKY12                  <---------MYB52(1)                            ------>MYB83       --------->WRKY38(1)               <--------P------>ZmHOX2a(1)        --------->AHL20(2)  -----     <---------ANAC58                  <---------MYB46(3)      ----------->HVH21     <---------MYB59     <---------ANAC58          --------->GLK1(1)  <-----------------AGL3    <---------AHL20(2)  ----- ---->WOX13(1)                 <---------GLK1(1)------>ZmHOX2a(1)          --------->AHL20(2) -------   atcaatgggttgacctagttattccaaagttggatttcaattggttagtcctccttctaatgggttcgacatggccatttaattagaccaaatcatataa  4549300                                                                                                    -                                                                                              -------                                                                                              -------                                                                                              -------                                                                                              -------                                                                                              <------                                                                                              -------                                                                                             <-------                                                                                             <-------TEIL                                                               <-----------GT1              ---------                                                        <---------ARR14(3)                  ---------                                                        <---------GLK1(2)                  --------->ARR11(3)                  ------->GAMYB                         --------->ARR14(3)                 --------->ARR11(1) ---->ANAC46     --------->MYB46(3)                     --------->ARR11(3)                 --------->ARR14(2) ---->ANAC58     --------->ANAC46                 <-----------GT1                          <---------ARR14(2) ---->ANAC58    <---------At4g35610             <---------WOX13(1)                       ----------->ARR10 --->DOF2      --------->MYB52(1)      ---------->DOF2  <---------ARR11(3)       ------------>CBF <--   gccagtttttgtcaattcaacggcccatttttgtaaacatggaaagtctgatttacaagattttgttacagttgtacttaacatacaatctaagatacgg  4549400                                                                                           --------->KAN4(2)      --------->ANAC58                                                                    <---------HSFB2a(1)      --------->ANAC58                                                                    <---------KAN4(1)      ----------->GT1                                                                     --------->HSFB2a(1) >>>>>>>>>>WRKY38                                                                         --------->KAN4(1) >>>>>>>>>>WRKY43                                                                        --------->ARR14(2) >>>>>>>>>>WRKY26                                                                        ---------->TaMYB80 -------->WRKY38(1)                    --------->AHL20(2)                                <---------ARR14(2) -->ANAC55(2)                          <---------AHL20(2)                        <------MYB83 ------- -->ANAC58                           <----------DOF2      ----------->HVH21      <---------ANAC46 -->ANAC58                    <---------ICU4          <---------RVE1(1)          <------MYB46(1) -->ANAC55(1)                <---------ATHB12         <---------CCA1(1)         <---------MYB46(3) ---ANAC55(2)              --------->WOX13(1)        <---------ARR11(3)         --------->MYB111(2) -->ANAC46               ------------>CBF           <<<<<<<<<RAP2.2             --------->MYB46(2) --LBD16    <---------ARR11(3)<--------HAHB4    <----------DOF2                 --------->MYB55(2) >ARR14(1)  --------->ARR11(3)--------->ATHB12 <---------ANAC58                 --------->MYB111(1) >CCA1(2)   <---------AHL20(1)--------->YAB1   <---------ANAC58                 <---------AtMYB61---- ----------CBF    ------>ZmHOX2a(1) --------->TOE2(3)--------->ARR11(3)    --------->DAG2<---------KAN4(2)   aattgaccaagtaatatatcctactatatcaatcatttcctttaattttgctttagatatttgacatgaaatttgaaaaggtttggtggagaatattctt  4549500               --------->At4g35610         ------>MYB83         ------>MYB46(1)        ----------->RAV1(1)       ------->GAMYB       --------->AtMYB61      <---------MYB52(2)                  <------------CBF      --------->MYB46(3)               ------->GAMYB                     ----------->GT1      <---------MYB55(2)     <---------ARR11(3)                --------->ANAC46     --------->ANAC58    <---------AHL20(2)                   <---------------AGL15     --------->ANAC58    --------->AHL20(2)   <---------RAP2.6(2)      ---------->DOF2              < -->TOE2(3)--------->TOE2(3) --------->ARR11(3)               --------------->AGL15              <--- ------>DOF2  <---------ARR11(3) <-----------GT1   <----------DOF2 ---------->DOF2            <------   aaatcgcaaccaacattatctgcctatttaaaatcttacaaccctattgcgacctttcacattacacctaaaagaaagaaaaaaactccatttgcagttt  4549600                                                     --------->HSFB2a(2)                                                     <---------HSFB2a(2)                                                  <---------ARR14(2)          --------->LBD16                                           --------->ZAT2               <------ZmHOX2a(1)                                           <---------ZAT14    --------->GLK1(2)    --------->REM1(1) <<<<<<<<MYB2                              --------->ZAT14   --------->ARR14(2)<-----------HVH21 ------AtMYB61                             <---------ZAT2    <---------GLK1(2)----------->GT1======== ---ARR14(2)        ----------->TGA1      --------->AtLEC2 ----------->ARR10<---------LBD16  <------ZmHOX2a(1)   tggttttctgaaatttagaagaatgacgacgatgtctaatctccctgcagaggttttggaagagattctctcaaggactccggttacatctctgaggaca  4549700                       <---------KAN4(1)                  --------->ALFIN1              ----------->RAV1(2)                             <----               --------->DAG2                --------->KAN4(2)                                  -----              ---------->DOF2 --------------->AGL15   --------->At4g35610                       -----            <---------------AGL15           <---------KAN4(1)    --------->At4g35610         <XXXXXXX            ==================================MADS_MADS     --------->ANAC58               ----------           ----------------->AGL1  ---------->DOF2------>ZmHOX2a(1)     ----------->GT1  ---------->DOF2         --------->AtLEC2     <---------------AGL15   <---------At4g35610         <---------YAB1<----   <------ZmHOX2a(2)   --------->KAN4(1)    --------->KAN4(1)    <---------At4g35610  --------->AHL20(2) =========HOX2a_HOX2a <---------KAN4(2)    <---------YAB1   --------->ANAC58  <---------TOE2(3) -----   atgcgatctacttgcaaaaagtggaacaatctctcaaaaaagaagattattcctgaagctgcaaggaagcagcaaggtttaatgttgattaaaaagaaaa  4549800                                                               --------->MYB59                                                           --------->YAB1    <---------ANAC46                                  <-------TEIL    <---------ANAC58                                --------->LBD16    <---------ANAC58                               <---------ANAC55(1) -----ARR14(2)                                     <---------ANAC58 ---->ARR14(2)                                     <---------ANAC55(2) ---->ARR11(3)                                     <---------ANAC58             ----------->RAV1(1) XXXXXXXXXXXXXMIR866-5P                        <---------DEAR3(2)            --------->ANAC58     <-- ->GT1                                         <---------SPL7 <---------ICU4 --------->ANAC58     --- -----ARR11(3)                             --------->ANAC46--------->WOX13(1)--------->ANAC46     --- ---->GLK1(2)                      --------->YAB1  <---------ANAC46         ------>ZmHOX2a(1)--------   tctgttccttgagtttcagtctccatgaaattcacaaggatgactacgtcgttccgtgcattaatcaggtcgatattcctcgcaacatagaagtagagaa  4549900              <------NtERF2             ------>NtERF2            <---------RAP2.6(2)            --------->ATERF1(2)            --------->bZIP60(1)            --------->ANAC58            --------->ANAC58            <---------bZIP60(1)           --------->RAP2.6(3)         ----------->TGA1                                                           =============HOX2a_HOX2a         ----------->HVH21                                          <---------ARR11(1)     <---------At5g28300                                            <-----------ARR10   xxxxxxxxxxxxxxxx>smallRNA(i)                                     --------->ARR11(3)    ------>ZmHOX2a(2) -------ARR11(3)                            --------->ZAT14         --------->ARR14(2)  <---------ARR14(2) ------>ARR11(3)                     <------ZmHOX2a(1)              <---------ARR11(3)  --------->ARR14(2) ------>GLK1(2)             <-----------HVH21     <----------DOF2   <---------ARR14(2) <------ZmHOX2a(1) --->GT1<-----------HVH21  --------->ANAC46 <---------ZAT14        <---------CCA1(2)<------ZmHOX2a(1)   aatctttcactgtgacggcatattgttatgcgtcatagaggacaactgtagtcttttggtatggaatccatatctagggcaaacgaggaggatcgaagta  4550000                  --------->ATHB12                  --------->YAB1                <---------WOX13(1)             <---------YAB1         ------>NtERF2                                                      <---------YAB1         >>>>>>>>>>DREB2A                                      --------->GLK1(2)         <---------RAP2.6(3)                                   --------->ARR11(3)         <---------DDF1                                        <---------ARR11(3)         >>>>>>>>>>DREB1A                                      --------->ARR14(3) <---------ARR11(3)        <---------ETT(1)                        ----------->RAV1(1)    <------ZmHOX2a(1)      ------>NtERF2                            --------->MYB46(3)    <---------TOE2(3)         ------   --------->At4g35610<------MYB46(1) --------->ANAC58         <---------ARR14(3) --------->ARR11(3)   <---------At4g35610<------MYB83    --------->ANAC58   ----------->RAV1(1)<---------TOE2(3)  ------   agttccgatgccgacatgaatgataggtatgctcttggttacgacaacaacaacagtagccacaaaatcttgaggattaagaaagattttaagaacagcg  4550100  Previous    Next  AGI:  At3g13820.1    Description:  F-box family protein. Identical to F-box protein At3g13820 [Arabidopsis Thaliana] (GB:Q9LRW6); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G13680.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain F-box associated type 1 (InterPro:IPR006527) Range:  from: 4549623    to: 4550870    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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