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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
------>
ZmHOX2a(2)
=============
HOX2a_HOX2a
=============================
HOX2a_HOX2a
<------
ZmHOX2a(2)
==============
HOX2a_HOX2a
<---------
ARR14(2)
----------->
GT1
--------->
ARR14(2)
<---------
AtLEC2
--------->
ARR11(3)
<---------
HSFB2a(2)
<----------
DOF2
<---------
ARR11(3)
--------->
HSFB2a(2)
<---------
ANAC46
---------->
DOF2
------>
ZmHOX2a(1)
<---------
ANAC58
================
HOX2a_HOX2a
--------->
AtLEC2
<---------
AtMYB61
<---------
LBD16
--------->
GLK1(1)
------>
TOE1(3)
--------->
AHL20(2)
============================
HOX2a_HOX2a
------>
TOE2(3)
----------->
GT1
<------
ZmHOX2a(1)
<---------
GLK1(1)
->
YAB1
<---------
ANAC58
----------->
GT1
--------->
LBD16
------>
ZmHOX2a(1)
---------->
DOF2
------
-
YAB1
<------
NtERF2
--------->
At4g35610
===============
HOX2a_HOX2a
<---------
ARR14(2)
------
c
cttaggtggcttgaatggataatcagatgggaaaattatatccaggaaaaagatccctccttcatagggagttc
ctgcaaaagttccataaacaccaaa
4424500
<----
<-------
<-------
<------
NtERF2
<---------
MYB46(3)
<---------
AtMYB61
<--------
ATHB1
--------->
YAB1
<------------
ATHB5
<---------
ATHB12
>>>>>>>>>
MYB98
--------->
ICU4
------>
MYB46(1)
=======================
------>
MYB83
--------->
LBD16
<---------
DEAR3(1)
>
MYB83
--------->
MYB52(1)
--------->
YAB1
<------
ZmHOX2a(1)
<-----
>
MYB46(1)
<---------
MYB59
<---------
GLK1(2)
---------->
DOF2
--------->
AHL20(2)
<---------
ICU4
ttcaaagacttgaaaacctaacaaattttcaatcggattatctacaaatattcaaagagagtatcagaattaaac
ccgaaggaccaatgatggtggcgat
4424600
<------
ZmHOX2a(1)
===============
HOX2a_HOX2a
<-----------
RAV1(2)
--------->
At4g35610
--------->
ZAT2
<---------
AtMYB61
-----------
--------->
ARR11(3)
--------->
YAB1
------>
ZmHOX2a(1)
<---------
ATHB12
<---------
At4g35610
<---------
ARR14(2)
--
ZmHOX2a(2)
----------->
RAV1(2)
<------
ZmHOX2a(2)
--------->
ARR14(2)
---
--
ANAC58
<---------
ARR11(3)
<---------
ATHB12
--------->
At4g35610
------->
TEIL
<-------
--
ANAC58
<---------
GLK1(2)
<---------
ZAT2
--------->
ALFIN1
<---------
At4g35610
<---------
CCA1(2)
<--
==
HOX2a_HOX2a
<-----------
RAV1(2)
--------->
ALFIN1
<---------
At4g35610
-----------
----
ARR14(2)
<----------
DOF2
--------->
WOX13(1)
--------->
YAB1
--------->
At4g35610
----------->
RAV1(2)
ccaatggtagagattatctccttttggaccagctgagcaatcaggaggtggatcaatgttaagctcagccatctccctctgtatcctcttccctgacgca
4424700
<
--------->
ZAT2
<---------
O2
<---------
SPL7
<---------
ZAT2
--------->
ARR11(3)
--------->
O2
--------->
ARR14(2)
<---------
At4g35610
<---------
GLK1(1)
------>
MYB46(1)
<--
---------->
TaMYB80
------->
GAMYB
<---------
MYB52(1)
<---------
MYB52(1)
<---------
MYB52(1)
------>
MYB83
--------->
TGA1a
--------->
ARR14(2)
--------->
SPL7
==================================
MYC_MYB
<---------
ARR14(2)
<-------
TEIL
<------------
MYB.PH3(1)
--------->
At4g35610
<------
NtERF2
<---------
ANAC58
===================================
MYC_MYB
------>
NtERF2
<---------
ARR14(2)
<------
NtERF2
=========================
MYC_MYB
--------->
DEAR3(1)
<---------
ANAC46
--------->
MYB52(1)
------>
NtERF2
-
--------->
ZAT14
--------->
ANAC46
<---------
LBD16
<-----------
HVH21
------->
GAMYB
<-----------
RAV1(2)
>
TGA1
<---------
DEAR3(1)
<---------
ANAC58
<---------
DOF5.7(2)
--------->
LBD16
------>
ARR14(2)
<---------
ATERF1(1)
--------->
ANAC46
--------->
DOF5.7(2)
--------->
ANAC46
--
ANAC46
--------->
ANAC58
--------->
LBD16
------>
NtERF2
--------->
AtMYB61
------
-------
ARR14(2)
--------->
ANAC58
------>
ZmHOX2a(1)
--------->
DEAR3(1)
--------->
MYB46(3)
<-----
>
HVH21
-------->
P
--------->
ATERF1(1)
--------->
LBD16
<---------
DEAR3(2)
<---------
ATERF1(1)
gaaactgaagtcttcgctacccaagacgacgccgttcctgaatatccggcgtacatcgccgtcggtaacggtctcaacctcccgcttccgccaggtgtca
4424800
<--
===
<---------
DEAR3(1)
--------->
LBD16
-----
<------
NtERF2
--------->
ANAC58
---------
<---------
DEAR3(1)
--------->
ANAC58
---------
<xxxxxxxxxxxxxxxx
smallRNA(i)
--------->
ANAC46
---------
---------
At4g35610
<---------
MYB52(1)
--------------------->
WRI1
--------->
HSFB2a(2)
-----
-------
ICU4
<------
NtERF2
<---------
At4g35610
------>
ZmHOX2a(2)
<---------
HSFB2a(2)
<----
-------->
At4g35610
--------->
ARR14(2)
<---------
ALFIN1
<---------
ALFIN1
*
TSS
------
--->
bZIP60(1)
<---------
ARR14(2)
--------->
ANAC46
--------->
ANAC58
<---------
ARR11(3)
----
bZIP60(1)
<---------
GLK1(2)
--------->
ANAC46
--------->
ANAC58
--------->
ARR11(3)
tcat
ctcccgtcgtcgtcgtcttccgatactctctgcttatccaatccaccacttgatcgtttcgctcgcactccatcgggaaaagattt
cgaaacgccg
4424900
<---------
AHL20(2)
<---------
ANAC58
<---------
ANAC46
<---------
bZIP60(2)
<---------
O2
--------->
TGA1a
<---------
TGA1a
--------->
O2
<---------
ANAC58
--------->
DAG2
--------->
AHL20(2)
---------->
DOF2
<---------
AHL20(2)
--------
DOF2
========================
bZIP_DOF
===============================================
bZIP_DOF
->
NtERF2
<---------------
AGL15
--------->
ALFIN1
>
ANAC58
--------->
AHL20(2)
<---------
TGA2(2)
<---------
YAB1
---------
>
ANAC46
<---------
ATHB12
------>
NtERF2
<---------
AHL20(2)
<--------
>
ANAC58
------------>
CBF
----------->
HVH21
<---------
YAB1
--------->
ZAT6
---->
LBD16
--------->
WOX13(1)
--------->
WRKY12
<---------
AHL20(2)
<---------
ATHB12
--
NtERF2
<------
ZmHOX2a(2)
----------->
TGA1
------->
TEIL
<---------
AHL20(2)
<---
--->
DEAR3(1)
<---------
AHL20(2)
--------->
At4g35610
----------->
GT1
<---------
AHL20(2)
--------->
YAB1
cgtttttgtccgatcaattaaacaaataaagtaatcgctgacgtggagattaattttgtaacatgtattttttatttttattttctctcactaatcacta
4425000
-
-
----
<---------
ANAC46
<-------
PIF5
======================================
<----------
DOF2
------->
MYC3
<---------
ICU4
<---------
AHL20(2)
------>
ZmHOX2a(1)
<-------
MYC2
--------->
YAB1
<---------
AHL20(2)
---------->
ID1
------->
PIF5
<---------
ICU4
--------->
AHL20(2)
<---------
YAB1
------->
MYC2
<--------
HAHB4
--------->
AHL20(2)
--------->
KAN4(2)
<-------
MYC3
--------->
AHL20(2)
<---------
AHL20(1)
--------->
HSFB2a(1)
<--------
<---------
AHL20(1)
--------->
AHL20(1)
<---------
HSFB2a(1)
---------
<---------
AHL20(2)
<---------
MYB59
--------->
KAN4(1)
=========
--------->
AHL20(1)
------->
GAMYB
<----------
TaMYB80
---------
<---------
ATHB12
--------->
ANAC58
<---------
KAN4(1)
<--------
--------->
AHL20(2)
--------->
ANAC58
---------->
TaMYB80
<--------
>
YAB1
<---------
ATHB12
<---------
AHL20(2)
<---------
ARR14(2)
---------
-
ICU4
--------->
ICU4
------>
MYB83
--------->
ARR14(2)
<-----------
GT1
------
YAB1
<---------
YAB1
------>
MYB46(1)
<---------
KAN4(2)
----------->
GT1
<---
tcaataaatttgtaatcattttgacaaccaaatttatttaagttgaattatcgaatattcttgtccttttgtgtaatgtgatcatgttataaccacgtga
4425100
<---------
ICU4
--------->
ATHB51
<---------
AHL20(2)
<--------
ATHB1
--------->
YAB1
------>
ZmHOX2a(1)
-------->
TOE2(3)
-------->
TOE1(3)
----->
ARR14(2)
--------->
ARR11(3)
=
bZIP_DOF
<---------
ARR11(3)
-
TGA1a
<---------
ICU4
>
TGA1a
--------->
YAB1
<-----------------
AGL1
====================================
bZIP_DOF
<---------
ALFIN1
-
>
O2
--------->
AHL20(2)
---------->
DOF2
--------->
ANAC58
<---------
AHL20(2)
-
O2
--------->
ICU4
<---------
YAB1
--------->
ANAC58
--------->
AHL20(2)
-
ANAC55(2)
-------->
HAHB4
--------->
DAG2
----------->
GT1
<---------
AHL20(2)
>
ANAC46
<---------
ATHB12
<---------------
AtSPL8
--------->
AHL20(2)
------
ARR14(2)
--------->
ICU4
---------->
DOF2
---------->
DOF2
<---------
AHL20(1)
atccttaataatttgataaatgattattcaaagttcttgaaaaaggcacacattttggaaagaaaattgaaattatccaaaatcaatttaatttttgttt
4425200
--------->
TOE2(3)
--------->
ATHB12
--------->
ANAC55(2)
<-------
TEIL
<---------
ANAC55(2)
--------->
ICU4
--------->
ANAC46
<---------
ZAT18
--------->
ATHB12
<---------
ZAT14
<-----------
GT1
<---------
YAB1
------>
ZmHOX2a(1)
--------->
YAB1
<---------
YAB1
<---------
ANAC46
--------->
ZAT14
--------->
AHL20(2)
-------->
YAB1
<---------
AHL20(2)
<---------
TOE2(3)
--------->
ZAT18
<---------
AHL20(2)
aaacataatcaaatttactctgtcaatttttat
gaataacatgatttacgtaaactctcctacaatgcactgattcatttgaatatgaaatttaaatcac
4425300
<---
--------->
AHL20(1)
----
<---------
AHL20(1)
----
--------->
ARR11(3)
<-------
<---------
ARR11(3)
<----------
ID1
---------
<XXXXXXXXXXXXXXXXXXXX
MIR846
---------->
DOF2
<----------
DOF2
--------->
ZAT6
<---
tctaattcgaatattttagttcaaagatgaagacaaaaaaaagaatgggaacttgtgagccctctttagtctctagttacacttacactaaaaacaaagt
4425400
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Next
AGI:
At3g13550.1
Description:
FUS9 (FUSCA 9); ubiquitin-protein ligase. Identical to Constitutive photomorphogenesis protein 10 (COP10) [Arabidopsis Thaliana] (GB:Q9LJD7); similar to UBC29 (UBIQUITIN-CONJUGATING ENZYME 29), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT2G16740.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22057.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608); contains InterPro domain Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135)
Range:
from: 4423356
to: 4424890
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At3g13560.1
Description:
glycosyl hydrolase family 17 protein. Identical to Putative glucan endo-1,3-beta-glucosidase 4 precursor [Arabidopsis Thaliana] (GB:Q94CD8;GB:Q9LJD6); similar to glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative [Arabidopsis thaliana] (TAIR:AT2G01630.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN72077.1); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490); contains InterPro domain X8 (InterPro:IPR012946); contains InterPro domain Glycoside hydrolase, catalytic core; (InterPro:IPR013781)
Range:
from: 4425234
to: 4428186
Orientation: Reverse
Links:
TAIR
MIPS
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publications
when using AthaMap.
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