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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                   ------>ZmHOX2a(2)
                                                   =============HOX2a_HOX2a
                                                  =============================HOX2a_HOX2a
                                                  <------ZmHOX2a(2)
                                                  ==============HOX2a_HOX2a
                                                 <---------ARR14(2)
             ----------->GT1                     --------->ARR14(2)
          <---------AtLEC2                       --------->ARR11(3)                <---------HSFB2a(2)
       <----------DOF2                           <---------ARR11(3)                --------->HSFB2a(2)
      <---------ANAC46                       ---------->DOF2            ------>ZmHOX2a(1)
      <---------ANAC58                    ================HOX2a_HOX2a   --------->AtLEC2
<---------AtMYB61                      <---------LBD16             --------->GLK1(1)
------>TOE1(3)                   --------->AHL20(2)============================HOX2a_HOX2a
------>TOE2(3)            ----------->GT1 <------ZmHOX2a(1)        <---------GLK1(1)
->YAB1<---------ANAC58   ----------->GT1--------->LBD16  ------>ZmHOX2a(1)  ---------->DOF2   ------
-YAB1<------NtERF2    --------->At4g35610 ===============HOX2a_HOX2a<---------ARR14(2)        ------
 
ccttaggtggcttgaatggataatcagatgggaaaattatatccaggaaaaagatccctccttcatagggagttcctgcaaaagttccataaacaccaaa  4424500
                                                                                               <----
                                                                                            <-------
                                                                                            <-------
                                                                                           <------NtERF2
                                                                                       <---------MYB46(3)
                                                                                      <---------AtMYB61
                                                                                    <--------ATHB1
                                                                                    --------->YAB1
                                                                                    <------------ATHB5
                                                                                   <---------ATHB12
                >>>>>>>>>MYB98                                                     --------->ICU4
               ------>MYB46(1)                                               =======================
               ------>MYB83                                              --------->LBD16 <---------DEAR3(1)
>MYB83         --------->MYB52(1)                           --------->YAB1   <------ZmHOX2a(1)<-----
>MYB46(1)    <---------MYB59    <---------GLK1(2)---------->DOF2  --------->AHL20(2)<---------ICU4
 
ttcaaagacttgaaaacctaacaaattttcaatcggattatctacaaatattcaaagagagtatcagaattaaacccgaaggaccaatgatggtggcgat  4424600
                                        <------ZmHOX2a(1)
                                        ===============HOX2a_HOX2a
                                     <-----------RAV1(2)
                           --------->At4g35610
                           --------->ZAT2<---------AtMYB61                               -----------
           --------->ARR11(3)        --------->YAB1                               ------>ZmHOX2a(1)
<---------ATHB12           <---------At4g35610                                <---------ARR14(2)
--ZmHOX2a(2)               ----------->RAV1(2)  <------ZmHOX2a(2)             --------->ARR14(2) ---
--ANAC58   <---------ARR11(3)       <---------ATHB12      --------->At4g35610 ------->TEIL  <-------
--ANAC58<---------GLK1(2)  <---------ZAT2--------->ALFIN1 <---------At4g35610<---------CCA1(2)   <--
==HOX2a_HOX2a            <-----------RAV1(2)--------->ALFIN1       <---------At4g35610   -----------
----ARR14(2)     <----------DOF2  --------->WOX13(1) --------->YAB1--------->At4g35610 ----------->RAV1(2)
 
ccaatggtagagattatctccttttggaccagctgagcaatcaggaggtggatcaatgttaagctcagccatctccctctgtatcctcttccctgacgca  4424700
                                                                                                   <
                                                                                         --------->ZAT2
                                                                                         <---------O2
                                              <---------SPL7                             <---------ZAT2
                                       --------->ARR11(3)                                --------->O2
                                       --------->ARR14(2)                                <---------At4g35610
                                      <---------GLK1(1)                     ------>MYB46(1)      <--
                                     ---------->TaMYB80          ------->GAMYB        <---------MYB52(1)
                              <---------MYB52(1)         <---------MYB52(1) ------>MYB83 --------->TGA1a
                              --------->ARR14(2)--------->SPL7   ==================================MYC_MYB
                              <---------ARR14(2)<-------TEIL    <------------MYB.PH3(1)  --------->At4g35610
                           <------NtERF2     <---------ANAC58   ===================================MYC_MYB
                          ------>NtERF2<---------ARR14(2)<------NtERF2    =========================MYC_MYB
                         --------->DEAR3(1)  <---------ANAC46 --------->MYB52(1)     ------>NtERF2 -
  --------->ZAT14        --------->ANAC46<---------LBD16<-----------HVH21 ------->GAMYB<-----------RAV1(2)
>TGA1                    <---------DEAR3(1)  <---------ANAC58 <---------DOF5.7(2)    --------->LBD16
------>ARR14(2)        <---------ATERF1(1)--------->ANAC46  --------->DOF5.7(2)     --------->ANAC46
--ANAC46       --------->ANAC58   --------->LBD16       ------>NtERF2     --------->AtMYB61   ------
-------ARR14(2)--------->ANAC58   ------>ZmHOX2a(1)    --------->DEAR3(1)--------->MYB46(3)   <-----
>HVH21        -------->P--------->ATERF1(1)--------->LBD16 <---------DEAR3(2)     <---------ATERF1(1)
 
gaaactgaagtcttcgctacccaagacgacgccgttcctgaatatccggcgtacatcgccgtcggtaacggtctcaacctcccgcttccgccaggtgtca  4424800
                                                                                                 <--
                                                                                                 ===
          <---------DEAR3(1)                                               --------->LBD16     -----
         <------NtERF2                                             --------->ANAC58        ---------
       <---------DEAR3(1)                                          --------->ANAC58        ---------
    <xxxxxxxxxxxxxxxxsmallRNA(i)                                   --------->ANAC46        ---------
---------At4g35610    <---------MYB52(1)        --------------------->WRI1--------->HSFB2a(2)  -----
-------ICU4 <------NtERF2      <---------At4g35610    ------>ZmHOX2a(2)   <---------HSFB2a(2)  <----
-------->At4g35610    --------->ARR14(2)      <---------ALFIN1   <---------ALFIN1        *TSS ------
--->bZIP60(1)         <---------ARR14(2)   --------->ANAC46    --------->ANAC58   <---------ARR11(3)
----bZIP60(1)         <---------GLK1(2) --------->ANAC46       --------->ANAC58   --------->ARR11(3)
 
tcatctcccgtcgtcgtcgtcttccgatactctctgcttatccaatccaccacttgatcgtttcgctcgcactccatcgggaaaagatttcgaaacgccg  4424900
                                               <---------AHL20(2)
                                     <---------ANAC58
                                     <---------ANAC46
                                     <---------bZIP60(2)
                                     <---------O2
                                     --------->TGA1a
                                     <---------TGA1a
                                     --------->O2
                                     <---------ANAC58
                        --------->DAG2        --------->AHL20(2)
                       ---------->DOF2        <---------AHL20(2)
--------DOF2           ========================bZIP_DOF
===============================================bZIP_DOF
->NtERF2          <---------------AGL15--------->ALFIN1
>ANAC58       --------->AHL20(2)   <---------TGA2(2)                     <---------YAB1    ---------
>ANAC46  <---------ATHB12          ------>NtERF2                        <---------AHL20(2) <--------
>ANAC58  ------------>CBF         ----------->HVH21                   <---------YAB1--------->ZAT6
---->LBD16 --------->WOX13(1)     --------->WRKY12                  <---------AHL20(2)    <---------ATHB12
--NtERF2 <------ZmHOX2a(2)        ----------->TGA1            ------->TEIL<---------AHL20(2)    <---
--->DEAR3(1)  <---------AHL20(2)--------->At4g35610 ----------->GT1<---------AHL20(2)   --------->YAB1
 
cgtttttgtccgatcaattaaacaaataaagtaatcgctgacgtggagattaattttgtaacatgtattttttatttttattttctctcactaatcacta  4425000
                                                                                                   -
                                                                                                   -
                                                                                                ----
                                                                 <---------ANAC46           <-------PIF5
                                                              ======================================
                                                              <----------DOF2               ------->MYC3
               <---------ICU4     <---------AHL20(2)          ------>ZmHOX2a(1)             <-------MYC2
            --------->YAB1    <---------AHL20(2)           ---------->ID1                   ------->PIF5
            <---------ICU4    --------->AHL20(2)     <---------YAB1                         ------->MYC2
            <--------HAHB4   --------->AHL20(2)     --------->KAN4(2)                       <-------MYC3
 --------->AHL20(2)          <---------AHL20(1)    --------->HSFB2a(1)                     <--------
 <---------AHL20(1)          --------->AHL20(1)    <---------HSFB2a(1)                     ---------
 <---------AHL20(2)     <---------MYB59            --------->KAN4(1)                       =========
 --------->AHL20(1)     ------->GAMYB              <----------TaMYB80                      ---------
<---------ATHB12      --------->ANAC58             <---------KAN4(1)                       <--------
--------->AHL20(2)    --------->ANAC58            ---------->TaMYB80                       <--------
>YAB1      <---------ATHB12  <---------AHL20(2)   <---------ARR14(2)                       ---------
-ICU4      --------->ICU4 ------>MYB83            --------->ARR14(2)                  <-----------GT1
------YAB1 <---------YAB1 ------>MYB46(1)         <---------KAN4(2)             ----------->GT1 <---
 
tcaataaatttgtaatcattttgacaaccaaatttatttaagttgaattatcgaatattcttgtccttttgtgtaatgtgatcatgttataaccacgtga  4425100
     <---------ICU4
     --------->ATHB51
     <---------AHL20(2)
     <--------ATHB1
  --------->YAB1
------>ZmHOX2a(1)
-------->TOE2(3)
-------->TOE1(3)
----->ARR14(2)               --------->ARR11(3)
=bZIP_DOF                    <---------ARR11(3)
-TGA1a           <---------ICU4
>TGA1a           --------->YAB1             <-----------------AGL1
====================================bZIP_DOF<---------ALFIN1                                       -
>O2  --------->AHL20(2)  ---------->DOF2    --------->ANAC58                        <---------AHL20(2)
-O2 --------->ICU4 <---------YAB1           --------->ANAC58                        --------->AHL20(2)
-ANAC55(2)       -------->HAHB4        --------->DAG2   ----------->GT1            <---------AHL20(2)
>ANAC46         <---------ATHB12       <---------------AtSPL8                      --------->AHL20(2)
------ARR14(2)  --------->ICU4       ---------->DOF2  ---------->DOF2              <---------AHL20(1)
 
atccttaataatttgataaatgattattcaaagttcttgaaaaaggcacacattttggaaagaaaattgaaattatccaaaatcaatttaatttttgttt  4425200
                                             --------->TOE2(3)         --------->ATHB12
                                            --------->ANAC55(2)       <-------TEIL
                                            <---------ANAC55(2)   --------->ICU4
                                            --------->ANAC46  <---------ZAT18
                                      --------->ATHB12        <---------ZAT14
           <-----------GT1           <---------YAB1     ------>ZmHOX2a(1)
     --------->YAB1         <---------YAB1  <---------ANAC46  --------->ZAT14           --------->AHL20(2)
-------->YAB1           <---------AHL20(2) <---------TOE2(3)  --------->ZAT18           <---------AHL20(2)
 
aaacataatcaaatttactctgtcaatttttatgaataacatgatttacgtaaactctcctacaatgcactgattcatttgaatatgaaatttaaatcac  4425300
                                                                                                <---
        --------->AHL20(1)                                                                      ----
        <---------AHL20(1)                                                                      ----
        --------->ARR11(3)                                                                  <-------
        <---------ARR11(3)<----------ID1                                                   ---------
   <XXXXXXXXXXXXXXXXXXXXMIR846     ---------->DOF2          <----------DOF2      --------->ZAT6 <---
 
tctaattcgaatattttagttcaaagatgaagacaaaaaaaagaatgggaacttgtgagccctctttagtctctagttacacttacactaaaaacaaagt  4425400
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AGI:  At3g13550.1   
Description:  FUS9 (FUSCA 9); ubiquitin-protein ligase. Identical to Constitutive photomorphogenesis protein 10 (COP10) [Arabidopsis Thaliana] (GB:Q9LJD7); similar to UBC29 (UBIQUITIN-CONJUGATING ENZYME 29), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT2G16740.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22057.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608); contains InterPro domain Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135)
Range:  from: 4423356    to: 4424890    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At3g13560.1   
Description:  glycosyl hydrolase family 17 protein. Identical to Putative glucan endo-1,3-beta-glucosidase 4 precursor [Arabidopsis Thaliana] (GB:Q94CD8;GB:Q9LJD6); similar to glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative [Arabidopsis thaliana] (TAIR:AT2G01630.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN72077.1); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490); contains InterPro domain X8 (InterPro:IPR012946); contains InterPro domain Glycoside hydrolase, catalytic core; (InterPro:IPR013781)
Range:  from: 4425234    to: 4428186    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
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