Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                  ------>NtERF2               --------->DEAR3(1)              <------NtERF2              --------->At4g35610              <---------At4g35610              --------->ATERF1(1)                           ----------->RAV1(1)             <---------ATERF1(1)                            ------>MYB83            <---------DEAR3(1)                              --------->MYB52(1)           --------->ATERF1(1)                              -------->P           --------->At4g35610                             <---------ALFIN1           <---------At4g35610                            <---------MYB55(2)           <------NtERF2                                  --------->MYB46(3)          ------>NtERF2                                  --------->DEAR3(2)          <---------ERF1                                <---------ARR14(2)          <---------ATERF1(1)                           --------->ARR14(2)          <---------RAP2.3(1)                           <---------TCP20         <---------DEAR3(1)                             --------->PCF2   --------->YAB1          ----         --------->ATERF1(2)                          ----------->HVH21  <---------ICU4        <-----         <---------ATERF1(2)                         --------->TOE1(1)  <------ZmHOX2a(2)    <-------       <---------ATERF1(1)                           --------->TOE2(1) --------->ARR11(3)    ========       --------->LBD16                              ------>ZmHOX2a(1)  <---------ARR11(3)  ------>NtERF2       ------>NtERF2                   ------->GAMYB<---------LBD16    <---------ARR14(2)  <---------      <---------DEAR3(1)      <----------DOF2       ===========================HOX2a_HOX2a-----------     <---------LBD16          <---------DAG2--------->GLK1(2)         <------ZmHOX2a(1)   --------->ZAT18    <---------ATERF1(1)   ----------->HVH21--------->ARR14(2) <---------MYB55(2)        <---------At4g35610  <---------ARR14(2)    <---------ANAC58   <---------GLK1(2)------>MYB46(1)             --------->At4g35610 <------ZmHOX2a(1)<---------ALFIN1    --------->DEAR3(1)<---------TCP15(1)         --------->HSFB2a(2) -->DOF2<------NtERF2   <---------ANAC58   <---------ARR14(2) --------->MYB46(3)   <---------HSFB2a(2)   agaggaccccggcggcagcgccactggcctgacttttccaacgccgattctatcctcggacccaccagacgaggatcatgaccatcgggaagcggacagg  4297000                          <---------HSFC1(1)                          <---------HSFB2a(2)                  ------>MYB46(1)           ----------->RAV1(1)             <---------ICU4                     --------->ANAC58 ----->ALFIN1     ------>MYB83            --------->ICU4                      --------->ANAC46 ----ZAT2 --------->ANAC46--------->HSFB2a(2)                                 --------->ANAC58 ----RAV1(2)    --------->AtMYB61         <---------YAB1                   <---------ARR14(2) ======================RAV--------->HSFC1(1) <---------YAB1                --------->ARR14(2) ------- --HVH21--------->HSFB2a(2)         <---------MYB46(3)   ---------->DOF2  ------>ZmHOX2a(1) --------- >HVH21 <---------HSFB2a(2)     --------->ICU4        <---------MYB59   <---------------------WRI1 --   tggtcatgttccacaacaccaacgttttctcgaaatgtttgttcattattcttcgacctaaaagacaccttgaatcctatacgcacagagaagaccaaaa  4297100                                                                            <------MYB46(1)                                                                            --------->MYB52(2)                                                                            <------MYB83          ---                                                                            <---------MYB46(3)   ----                                                                           <---------AtMYB61     ----                                                                          <--------P             <---                                                                          <---------MYB52(1)     <---                                                                          <---------MYB55(1)     <---                                                                         <-------GAMYB           ----                                                      <---------ANAC46  <---------MYB46(3)      <----                                              <-----------RAV1(1)      <---------ANAC58         <----                                             <---------TOE2(3)         <---------ANAC58       <------                                          --------->AHL20(2)           <---------ANAC46       <------                     <------ZmHOX2a(2)    <---------AHL20(2)    --------->ARR11(3)            <------          --------->At5g28300        <-------TEIL<---------ANAC46     <---------LBD16      --------->ARR14(2) --->DOF2--------->YAB1          <---------TOE1(3) --------->ALFIN1<---------ANAC58        <---------ARR14(2) >AtMYB61----------->GT1         <---------TOE2(3) <---------ANAC46<---------ANAC58       --------->At4g35610 -------->DOF2 <----------DOF2   <---------------AtSPL8         <---------ARR11(3)        <---------At4g35610   ggaaagaacgatggtaactttcgatcagtttttttagggttcatataaatgttgtggagggagagagatacttgcggttggtttctatgggccgatgcgc  4297200                   <---------ANAC55(1)                   <---------ANAC58                   <---------ANAC46                   <---------ANAC58                 <---------AHL20(2)              --------->YAB1              <---------ICU4        --------->YAB1                                            --------->ANAC58       <---------AHL20(2)                                         --------->ANAC58      --------->AHL20(2)                                     --------->YAB1 ------>ALFIN1<--------HAHB4                                 <---------ICU4 --->PIF5     -------->HAHB4                                --------->ICU4 --->MYC3     <--------ATHB1                            --------->LBD16                           <-- ----MYC3     --------->ATHB51                         <---------ANAC55(2)                     ------ ----MYC2    <---------ATHB51                          <---------ANAC46                        ------ ----PIF5    --------->ICU4                            <---------ANAC58                      -------- --->MYC2  <---------ICU4                              <---------ANAC58                      -------- -----ANAC58 <---------YAB1                            --------->ANAC55(2)                   -------- -----ANAC58 --------->AHL20(2)                       <---------LBD16      <---------DAG2--------->CCA1(2) ---ANAC58 --------->YAB1      <----------DOF2    <-----------RAV1(1)      <----------DOF2 <--------- ---ANAC46<---------YAB1  <---------GLK1(1)  --------->AHL20(2)   --------->ANAC46      --------->ARR14(2) ---ANAC58--------->ICU4  --------->GLK1(1)  <---------AHL20(2) <-----------GT1     <---------At4g35610   gtggcccatataataataattacttgtgaattcctttaaacccaagtttaatttgttgcgcgattatcaccccatcacttttagtcatcagatttacgcc  4297300 -------ALFIN1                                              <---------ICU4 --->ANAC46                                                <---------YAB1 --->PCF2           --------->ANAC46                       --------->ICU4       <---------DAG2 ->ANAC58 --------->ANAC46                            --------->ANAC46          <----------DOF2 ->ANAC46 --------->ANAC58                            --------->ANAC58    <---------REM1(2) ->ANAC58 --------->ANAC58       <---------At4g35610  --------->ANAC58--------->ZAT6 --GT1  ---------->DOF2      <----------DOF2     <----------DOF2   <---------CCA1(2)    *TSS  <------   ccactatcgaaaacgcaagtctacaaaacttctttagctgttctctcactcctttcaagtcatcatcgtctatctctactcgcttttcgcgcttcccctc  4297400                                                                --------->TOE2(3)                                ------>NtERF2                   --------->TOE1(3)                             ------>NtERF2                     <---------HSFC1(2)                             --------->At4g35610               --------->HSFC1(2)                             --------->LBD16                   <---------HSFB2a(1)                           ------>ZmHOX2a(2)                  ------->TEIL                          --------->ARR14(1)               --------->ANAC58                          <------ZmHOX2a(2)                --------->ANAC58       <----------DOF2    --------->CCA1(2)                --------->ANAC46   ----------->HVH21     --------->ARR14(2)         <---------AHL20(2) <---------O2            <---------ARR14(2)         --------->ARR11(3) --------->ANAC46        <---------GLK1(2)          <---------ARR11(3) --------->O2     <<<<<<<<<TBF1--------->DEAR3(1)   --------->AHL20(2) --------->ANAC55(2)     --------->AGP1             --------->AHL20(1) <---------ANAC55(2)   ----------->ARR10<----------DOF2  <-----------GT1                       ------ ---ALFIN1<---------YAB1<---------At4g35610         <---------AHL20(1)        <-----------GT1 <------   tctacgtgacttttgatttcttcttcagatccgccgagtcttctttttctgaaatatattcacgaaccttcacattcaaattacacttgtctattgatcg  4297500                                                                                   ------>ZmHOX2a(2)                       ------>ZmHOX2a(2)                                      --------->SPL7                       --------->YAB1                                        <---------MYB52(1)                       ----------->GT1                                      <---------SPL7                      <------ZmHOX2a(2)     <---------At4g35610            --------->DEAR3(1)                <---------DEAR3(1)          ----------->RAV1(2)          ------>NtERF2               <-------TEIL--------->WOX13(1)                            --------->LBD16              --------->ARR14(1)      <------NtERF2                     --------->ANAC46             <---------ARR14(2)     <---------ANAC58                    ------------------>SPL14             --------->ARR14(2)     <---------RAP2.6(2)    ------->GAMYB--------->DEAR3(1)  ---------           ----------->ARR10 <---------ATHB12  ----------->GT1        ------>ZmHOX2a(1)     <-------- >ZmHOX2a(2) <---------GLK1(2)      <---------ANAC46     -------->P   ====================HOX2a_HOX2a ---WOX13(1) --------->ARR11(1)     <---------ANAC58--------->ZAT6--------->ARR14(2) --------------->AtSPL8   atatcgcaaaccctagattcggcgatcgtaaatcaatggcgtcttcacctggtaacactaaccctcacaatcctccgccgttcgatctcggtactatctt  4297600                                                                                        --------->ABI4(1)                                                                                        --------->ORA47(1)                                                                                       --------->RAP2.3(2)                                                                                       --------->RAP2.3(3)                                                                                       --------->DEAR3(1)                                                                                       <---------ATERF1(2)                                                                                      --------->ATERF1(1)                                                                                      --------->DEAR4(2)                                                                                      --------->ERF1                                                                            <------NtERF2<------NtERF2                                                                            ----------->RAV1(2)                                                                           ------>NtERF2------>NtERF2                                                                          --------->DEAR3(1)                                                                          <---------ATERF1(2)                                                                          --------->ATERF1(2)                                                                          --------->RRTF1(3)                                                                          --------->RAP2.3(2)                                                                          <---------ALFIN1--------->MYB46(3)                                                                          --------->RRTF1(2)                                                                          --------->RAP2.3(3)                                                                         --------->DEAR4(2)         <                                                                         --------->ATERF1(1)   ------                                                                         --------->RAP2.6(1)   ------                                                                         --------->ERF1--------->ATERF1(2)                                                                         --------->RAP2.3(1)  <------                                                                         --------->ORA47(2)   -------                                                                         --------->RRTF1(1)  ------>MYB83                                     <---------MYB52(1)                  <------NtERF2--------->ORA47(2)                                  <-------TEIL -------->P               <---------ATERF1(1)  --------           -------->P------>ZmHOX2a(1)        ------->GAMYB--------->ANAC46--------->ABI4(1) ------>MYB46(1)        --------->MYB46(3)      --------->ARR14(2)        --------->YAB1------>NtERF2 --------->RAP2.3(1) >ARR11(3) ------>MYB46(1)      <---------ARR14(2)   --------->ZAT14   --------->ANAC46--------->RAP2.6(2) -ARR11(3) ------>MYB83<-----------------AGL1--------->MYB46(3)      --------->ANAC46<---------RAP2.3(1)   caaaccctcatccaacccttatcctccccctacaggtccgtttcttaacaaccagtacaatcagcaactatacgcgccgcctggtatcgccgcccaacca  4297700                                                                                       --------->O2                                                                                      ------>NtERF2                                                                                     <---------ALFIN1                                                                                  --------->ANAC46                                                                                  --------->ANAC58                                                                                  --------->ANAC58  --------->LBD16                                                                 --------->bZIP60(2)  ----------->GT1                                         ------->GAMYB           --------->O2 ---------LBD16                               <---------MYB52(2)   --------->ANAC58  --------->DEAR3(1) ->GAMYB             <------ZmHOX2a(1)    <---------At4g35610      --------->ANAC58------>NtERF2 --->AtMYB61    ----------->RAV1(1)       --------->LBD16 --------->AtMYB61       <---------O2 ---ATHB12   --------->ANAC58            --------->ANAC46 ----------->RAV1(1)     --------->TGA1a -->MYB46(3) --------->ANAC58          ------>ZmHOX2a(1)  ==================================MYC_MYB >P          --------->ANAC46    ------>ZmHOX2a(1)       --------->MYB46(3)     <---------ALFIN1   tctccggtgaatcaaacgcaacaggatgtgtcttcctcttcctccgctactaacttgcaaccacagagaacgctatcttatcccacgccacctctcaatc  4297800                                                                     <---------ANAC58                                                                    <------NtERF2                                                                  <---------DEAR3(1)                                                                <---------bZIP60(2)                                                                --------->O2                                                                <---------ANAC46                                                                <---------ANAC58                                                                <---------ANAC58                                                                <---------O2                                                                <---------TGA1a                                                             --------->ALFIN1                              --------->ANAC58              --------->ATERF1(1)                         --------->LBD16                   <---------At4g35610                         <---------HSFB2a(2)               --------->ZAT2                         --------->HSFB2a(2)               --------->At4g35610                       <---------LBD16                     <---------ATERF1(1)                 --------->YAB1    --------->ARR14(2)     --------->ALFIN1                <---------ATHB12   <---------ARR14(2)     <---------DEAR3(1)              --------->WOX13(1) ------->TEIL           ==================MYC_MYB  <------NtERF2           <-----------HVH21  --------->ANAC58       --------->MYB52(1)           <---------ATERF1(1)         --------->LBD16<---------LBD16             --------->MYB46(3)           --------->RAP2.3(2)=        --------->O2 --------->ARR14(2)         ------>ZmHOX2a(1) --------->ALFIN1<-----------HVH21 - <-----------ARR10   --------->GLK1(2)         --------->ANAC46<------NtERF2     --------->DEAR3(1)<- --------->ARR14(2)  <---------ARR14(2)------>ZmHOX2a(1)------->GAMYB<---------ANAC58             <--   cccaatctccccgtgtcaatcacaatccgggaacgcacatcctcgctctcctcaacaacggaggtgccgtggcgaaccaagagccgtcgcatcacaacga  4297900  Previous    Next  AGI:  At3g13280.1    Description:  similar to nucleic acid binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G01355.1); contains InterPro domain Protein of unknown function DUF537 (InterPro:IPR007491) Range:  from: 4295334    to: 4297007    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g13290.1    Description:  VCR (VARICOSE-RELATED); nucleotide binding. similar to VCS (VARICOSE), nucleotide binding [Arabidopsis thaliana] (TAIR:AT3G13300.1); similar to VCS (VARICOSE), nucleotide binding [Arabidopsis thaliana] (TAIR:AT3G13300.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO45214.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN72630.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN70211.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 4297388    to: 4303515    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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