Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                      --------->AHL20(2)                                                                    <---------AHL20(1)                                                                    <--------ATHB1                                                                    --------->YAB1                                                                    <---------AHL20(2)                                                                    <---------ICU4                                                                   --------->ICU4              ------                                                                   <---------YAB1            --------                                                                 <---------ICU4           --------->ANAC46 -->CCA1(2)                                                      --------->YAB1           --------->ANAC58 --AHL20(1)             --------->YAB1                        --------->YAB1              --------->ANAC58 ->AHL20(1)    --------->ANAC46                           <---------ICU4           <---------ICU4 --ARR11(3) <---------ZAT18                              --------->ICU4           --------->ICU4 ->ARR11(3) --------->ZAT18  --------->AtLEC2      --------------->AtSPL8   --------------->AtSPL8   tgggacaattcaattgcacttaacaatattgatgcaaagacttcaaaagactctttgtactcattaataataattttctaagtactcattaaacgcaacg  4239600                         <-----------GT1                                                      -------                    <---------ANAC46             ----------->GT1                --------->AGP1-------              --------->ARR14(2)           --------->STY1(2)                   --------->At4g35610---              --------->ARR11(3)           <---------STY1(2)                   --------->ZAT2 <------          --------->TOE2(3)--------->ZAT6 --------->ANAC58             --------->ZAT6         <------ --->MYB46(3) <---------ARR11(3)          --------->ANAC58 <---------ATHB12-------->P   ----------->GT1 ->MYB52(1) ----------->ARR10    --------->ZAT6 <---------ZAT6       <-----------GT1   --------->ALFIN1   actctatgtcaacctagatattcagtgtaacactatcactactcaagctagtggtaactaaatcaatggatttactctaccagctctatgtggagaaact  4239700                                    --------->LBD16                                    ----------->HVH21                                 --------->MYB52(1)                                 ------>NtERF2                                <---------ALFIN1                                --------->DEAR3(1)                               --------->MYB46(3)                               <---------ABI4(2)                               --------->ATERF1(1)                        ------>NtERF2 --------->ARR14(2)                       ----------->HVH21 ----------->GT1         --------->GLK1(2)    ------>NtERF2        <---------GLK1(2)     <---------ATERF1(1)                                               <----        --------->ARR14(2) <---------ATERF1(1)                                           --------->MYB52(1)        <---------ARR14(2)<---------DEAR3(1)                                          --------->ANAC58 -->HSFC1(2)          --------->LBD16 <---------ARR14(2)                              --------->ANAC58 -->HSFB2a(1)        --------->ANAC46 ------->TEIL                                --------->AtLEC2 -------------->AGL3<---------LBD16--------->DEAR3(1)                             --------->ANAC58 ---HSFC1(2)     --------->GLK1(1) --------->MYB46(3)        --------->LBD16      --------->ANAC58 ---HSFB2a(1)    <---------GLK1(1)<------NtERF2    <------ZmHOX2a(1)            <-----------RAV1(2)   tccaaattcagattctgagatttccgcgacggagccaccggacctgaaaaataggaaattttccgagagattgaagacagaaccaggcaaacaacgtcga  4239800                  <---------AHL20(2)           <-----------GT1        <---------YAB1       <---------AHL20(1)      <---------------AGL15      --------->ATHB51         --------------->AGL15                                               <-      --------->AHL20(2)      ----------------->AGL2                                           <-----     --------->ICU4           ----------------->AGL3            <-----------RAV1(2)         <--------     <---------MYB52(1)---------->DOF2                        <-----------HVH21             <-------- -----ARR14(2)    --------->AHL20(2)                <-----------GT1                    <----------DOF2   tactgccattatttttctatttttttaaagaaaccaaaaacagtagagaactattcacctcttctatcaggcgaaaatggttttcgagtcttttgggttc  4239900                                --------->At4g35610                   <----------DOF2                 --------->HSFC1(2)                                               ----------->RAV1(2)    --------->ANAC46            --------->ZAT2                                    <---------ZAT2    --------->MYB46(3)          <---------At4g35610                               --------->ZAT2  <-- ---------DOF2   <---------HSFC1(2)            --------->ANAC46                   --------->At4g35610 --TEIL         --------->GLK1(2)     ----------->GT1                            ==================== -ANAC58  --------->LBD16<---------ANAC58    --------->ANAC46    ------>NtERF2<---------ALFIN1 ------ -ANAC58 <---------LBD16 <---------ANAC58--------->CCA1(2)      --------->ANAC46 <-----------RAV1(1)-   gcttaaacgaccctggagaagctttctgcgtttcagcagacagataaacgcgaaatgagagcaattgcgccatggatgctccactgctggagctagagcc  4240000                                                                                            ---------                                                                                           ------>ZmHOX2a(2)                                                                                          --------->GLK1(1)                                                                                          <------ZmHOX2a(2)                                                        <---------MYB46(3)               <---------AGP1       <---------GLK1(1)                                <------MYB46(1)                  --------->ARR14(2)       --------->GLK1(1) <---------At4g35610            <------MYB83                     <---------ARR14(2) --------->TOE2(2)       --------->At4g35610           <---------AtMYB61                 <---------ARR14(3) --------->TOE1(2)     <---------HSFB2a(2)          --------->ALFIN1                     <---------ARR11(3) <---------LBD16  <---------TOE1(2)         --------->LBD16                              <-----------ARR10 -------ALFIN1--------------->AtSPL3        ------>NtERF2                                --------->ARR11(3) ===========RAV--------->YAB1              --------->ANAC46                             <---------At4g35610 ----------->AGL1 *TSS --------->HSFB2a(2)<---------LBD16<<<<<<<<<<MYB80          <----------DOF2 ---------->RAV1(2) <----------DOF2   <----------DOF2 <--------P       ---------->DOF2  <---------CCA1(2)   aaacctgggaactcttatcgtactttcagaagaaaacactcttttccgccaagagtgttggtttaatgggcctaaaagcccatactttgcagatctcaat  4240100                                                                --------->ANAC46                                                                <---------ANAC55(2)                                                                --------->ANAC58                                                                --------->ANAC55(1)                 -                                                                --------->ANAC55(2)                 -                                                                ----------->GT1                     <                                 <----------DOF2                --------->ANAC58                    <                     <---------DAG2                  ---------->DOF2                                <           ------>NtERF2      ---------->ID1      --------->ANAC58                                  <         <---------RAP2.6(2)  <-----------GT1     --------->ANAC58             *TSS                 -  ------------>CBF   <----------DOF2     <-----------GT1----------->GT1     ---------->DOF2 --------- --->CBF--------->RAP2.6(3)  <-----------GT1      --------->ANAC46   --------->ICU4------>ZmHOX2a(1)-   ttagttcaatttcggcccgtctacttttttttttcctttttttttacatttaacgcaaaggcaaaaacgtaattatctaaaagtcctcttcttccccagt  4240200                                   <---------ANAC58                                   <---------ANAC58                                  <---------At4g35610                               <-------GAMYB                              <-----------RAV1(1)                              <---------MYB46(3)                              --------->MYB55(2)                            <------NtERF2                            <-------GAMYB                            --------->At4g35610                 <-----------RAV1(1)  <---------ARR14(2)        <------MYB46(1)     <---------At4g35610        <------MYB83       ------>NtERF2------>ZmHOX2a(2)  ------>ZmHOX2a(1)        <---------ERF1 --------------->AGL15     <---------RAP2.3(1) <---------------AGL15    <---------RAP2.3(3) <---------MYB59 =================RAV --------->ARR14(2) ---------------->AG      --------->ATERF1(2) ---------------->AGL1    <---------DEAR3(1) -----------------AG      <---------RAP2.3(2) -----------------AGL1    <---------ATERF1(2) -----------------AGL2    <---------RAP2.6(2) -----------------AGL3   --------->ATERF1(1) ---------------->AGL3  <---------ATERF1(1) >LBD16--------->MYB59====================RAV ---------------->AGL2<-----------RAV1(2)                                                          --   tttcctaatttggtaacccttgttgcaggcggctgttgctgatcgggtctctcttctccattttccgattagtaagtgtttattctactcattttgtcaa  4240300                                                                                                  <--                                                                                                  ---                                                              <-------MYC3                       <---             --------->AtLEC2                     <----------DOF2                                ----        --------->TOE2(3)                 --------->DAG2      ------->MYC3                      <----        --------->YAB1                   --------->DAG2      <---------ANAC55(1)                -----  --------->YAB1                        ---------->DOF2      --------->ANAC55(2)         <----------DOF2 ------->RVE1(1)                     --------->YAB1 <---------AHL20(2)       ---------->DOF2 <-------   aatatcacaatgttaatgcaaatttacatatatcaactatcaaaaaggcaatcttttattgaaacgtgttctaagtttgaaaagactaaaactttcactg  4240400                                                 <-------PIF5                                                 ------->MYC2                                                 ------->PIF5                                                 <-------MYC4                                                 <-------MYC2                                                 ------->PIF4                                                 ------->MYC4                                                 <-------PIF4                                                 <-------MYC3                                                 ------->MYC3                                                <---------ANAC46                                                <---------ANAC58        <------ZmHOX2a(1)                       <---------ANAC58 --------->At4g35610                            =====================================bZIP_DOF <---------At4g35610                            <---------TGA1a                ====================== -------At4g35610                               ============================bZIP_DOF ------>At4g35610                               ==========================================bZIP_DOF --------RAV1(1)                       --------->ANAC58                        ---------->DOF2   ---- ----->ALFIN1                  <-----------------AGL1              ----------->GT1              <---- -----ZAT14                --------->ALFIN1     --------->TGA1a   --------->DAG2                ----- ---->ZAT14              <---------O2  --------->ANAC58          ---------->DOF2               ------ --At5g28300      <------ZmHOX2a(1) --------->ARR14(2) ----------->HVH21  ---------->DOF2      ------   tgctgctgtaggattaactaggaagtcatgtggttcagaataggcaattcacgtgcaatgacagagataaagtaaaaaaagaaaagtatagaggtacccg  4240500  Previous    Next  AGI:  At3g13180.1    Description:  NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein. similar to nucleolar protein, putative [Arabidopsis thaliana] (TAIR:AT4G26600.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45139.1); contains InterPro domain NusB/RsmB/TIM44; (InterPro:IPR006027); contains InterPro domain Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678) Range:  from: 4236024    to: 4240018    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g13190.1    Description:  myosin heavy chain-related. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G55860.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45150.1); contains InterPro domain Protein of unknown function DUF827, plant (InterPro:IPR008545) Range:  from: 4240179    to: 4241968    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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