Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                        ------->MYC3                                                                                     <---------O2                                                                                 <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                                ----------->HVH21                                                                            <xxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                 <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                <---------ARR11(3)   --------->O2                                                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                               <xxxxxxxxxxxxxxxxsmallRNA(i)                                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                               <xxxxxxxxxxxxxxxxsmallRNA(s)                                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                              <xxxxxxxxxxxxxxxxsmallRNA(s)                                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                              xxxxxxxxxxxxxxxx>smallRNA(i)                                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                            <xxxxxxxxxxxxxxxxsmallRNA(i)                                                            xxxxxxxxxxxxxxxx>smallRNA(i)                                                          xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                          xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                        -------->ABF1    <xxxxxxxxxxxxxxxxsmallRNA(i)                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                        ------->MYC2    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                        <-------MYC3   ------>ZmHOX2a(2)                                                        <-------MYC4   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                        ------->MYC4   xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                        ------->MYC3   <xxxxxxxxxxxxxxxxsmallRNA(i)                                                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                       --------->O2----------->HVH21<xxxxxxxxxxxxxxxxsmallRNA(i)                                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                       --------->ANAC55(2) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                       <---------ANAC55(2) <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                       <---------TGA1a xxxxxxxxxxxxxxxx>smallRNA(s)                                                       --------->ANAC46<xxxxxxxxxxxxxxxxsmallRNA(s)                                                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                       --------->TGA1a<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                       <---------O2<xxxxxxxxxxxxxxxxsmallRNA(s)                                                       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                            --------->AHL20(1)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                           --------->AHL20(2)<xxxxxxxxxxxxxxxxsmallRNA(i)                                    ----------->GT1   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                   --------->DAG2   <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)<---------TGA1a                                  ---------->DOF2 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)<-------MYC3                                  ===============================bZIP_DOF<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                             <----------ID1<---------AHL20(2)<xxxxxxxxxxxxxxxxsmallRNA(s)                             ----------->GT1<---------AHL20(2)<xxxxxxxxxxxxxxxxsmallRNA(i)                           ======================================bZIP_DOF<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                           ---------->DOF2--------->ICU4<-------MYC2 <xxxxxxxxxxxxxxxxsmallRNA(i)                      <----------DOF2  <---------AHL20(2)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  <----------DOF2     --------------->AGL15<---------ICU4xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         < ---->ATHB12          ===========================================bZIP_DOF<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ---WOX13(1)          <---------------AGL15--------->ATHB51<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)<------   atttcttttttagtatttctatttctttaaaaagaaaaaagttaattattttgttacacgtgtcaacatctgatcgatagacttgacacatggcataatc  3988400         <---------AHL20(1)         <---------AHL20(2)            <---------ARR11(3)         <--------ATHB1         <---------AHL20(2)      --------->ARR11(3)         --------->YAB1        --------->AHL20(2)       <---------ARR11(3)         --------->AHL20(2)   <---------YAB1           --------->CCA1(1)         <---------ICU4   <----------DOF2 --------->ANAC55(2)                                   -----        --------->ICU4    <---------DAG2  <---------ANAC55(2)         <---------ZAT6  -------->P----- ---------YAB1    <-----------GT1      --------->ARR11(3) >>>>>>>>>RAP2.2           ------>ZmHOX2a(2) ---ARR11(3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    --------->RVE1(1)     --------->DAG2     -----   ttatgagttaataattttaaaaaccatactttattatataagatacttatttagaaaatatctaaacacctagtgacaaaaattgatctaccaattccaa  3988500                                             <-----------GT1                                         <---------CCA1(1)                                         <---------RVE1(1)                                        --------->AHL20(1)                                        --------->ARR11(3)                                        <---------AHL20(1)                 <---------ATHB12                   <----------DOF2      <---------ARR11(3)               --------->WOX13(1)        ----------->GT1               <---------TOE2(3)                  --------->YAB1 ---->ANAC58    --------->GLK1(2)     <---------YAB1         <---------ARR11(3) ---->ANAC46   --------->YAB1      --------->ICU4            --------->ARR11(3) --------->YAB1 ---->ANAC58  <---------ATHB12--------->YAB1 <---------AHL20(2)         --------->AHL20(2)<----------DOF2   gtaaaatgaatagtcaataatcttttagtcaatagtcattaagatattaacttatttatccaagaactagtccattaatcaatagtcattaactttgtta  3988600                                                                 --------->ARR14(2)                                                                 <---------ARR14(2)                                                                 <-----------ARR10                                                                --------->GLK1(1)                                   <---------PCF5           ----------->GT1         --------->YAB1                                  <---------ZAT14          --------->ANAC46         <---------ICU4                                  --------->ZAT14          --------->ANAC58    <-----------TGA1                                  --------->ZAT18          --------->ANAC58--------->ARR14(2)                        --------->RAP2.3(3)              --------->MYB52(1)<---------ARR14(2)                     --------->ANAC58                --------->ANAC58     <---------ZAT2                     --------->ANAC58      --------->ARR14(2)   <---------GLK1(1)  <---------YAB1   -                 --------->ANAC58 --------->WRKY38(1)--------->ANAC58     <---------At4g35610     <--            <---------ICU4        --------->WRKY12   --------->ANAC46     --------->At4g35610 -------           --------->ICU4     --------->ATHB12     --------->MYB52(1)     --------->ZAT2     --------           <---------YAB1 <------NtERF2    <---------ARR14(2)--------->At5g28300   --------->ICU4 --- --------->ZAT6  --------->ANAC58--------->ALFIN1<---------MYB52(2)  ------>ZmHOX2a(1) --------->MYB52(1)   ctaacacttggacatcattaagcaagcccccatgagtggaccgcatatttgactaacgcaaacggcaaatcctagcagctccgtcatcataacagcgtta  3988700                                                                                                -----                                                                                                -----                                                                                                <----                                                                                                -----                                                                                             <-------                                                                                             --------                                                                                          --------->RAP2.3(1)                                                                                          <------NtERF2                                                                                         --------->LBD16                                                                                         ------>NtERF2               <---------ETT(2)                                                          --------->ABI4(1)               --------->ETT(2)                                                          <---------ATERF1(1)       <------NtERF2                                                                    --------->RAP2.3(3)       --------->ATERF1(1)                                                              --------->RAP2.3(2)      ------>NtERF2                                                                     --------->DEAR3(1)      <---------ATERF1(1)                                                               --------->ATERF1(2)      <-----------HVH21                                                                 <---------DEAR3(1)      <---------SPL7                                                                    <---------ATERF1(2)     <---------ANAC58                                                                  --------->ATERF1(1)     <---------ANAC58                                                                  --------->RAP2.3(1)     --------->DEAR3(1)                                                                --------->ERF1 -------->MYB52(1)                                *TSS  <------ZmHOX2a(2)              --------->ORA47(2) -------MYB52(2)                                 <------------CBF         --------->GLK1(2)  <------- -->DOF5.7(2)<-----------HVH21       <----------DOF2    ===================HOX2a_HOX2a --------->DEAR4(2) ->TOE2(3)----------->RAV1(2)<----------DOF2   <---------AHL20(2)   <------ZmHOX2a(1) <---------ATERF1(1) ------>MYB46(3)       ----------------------->TaNAC69(2)     <---------YAB1          <---------RAP2.3(1)   acaaacggcgtcccctgtcgaaagtctctctctttctcgcttctctgaaaaaattgggatcattttgataggagcgactctgttccttcgccgccgatac  3988800          <---------At4g35610 ---->ANAC58 ---->ANAC58                <--------P  ------>ZmHOX2a(1) -----ANAC55(2)        ------>ZmHOX2a(1)====================================HOX2a_HOX2a ---->ANAC55(2)    ---------->ID1   <-----------GT1--------------------->WRI1 --ARR14(2)    --------->GLK1(1)   <-----------GT1 <---------DAG2 ->ARR14(2)   --------->ARR14(2)<---------ARR11(3) <----------DOF2        --------->ICU4 --MYB52(1)   <---------ARR14(2)--------->ARR11(3)--------->TOE2(3)  ------>ZmHOX2a(2)   gcactcttcttcatcggatttgttcctctggtaagatttatccttctcttcacctttatgttcttcgatgatcgtattgattctatctgaattcaatctc  3988900                                                  --------->HSFB2a(2)                                                  <---------HSFB2a(2)                            <---                                                 <---------LBD16                               >>>>>>                                             ------->TEIL                                      >>>>>>                                             <---------ARR11(1)                            --------->CCA1(2)                                            <---------GLK1(2)                             <---------ARR14(2)                                            <---------CCA1(2)                             --------->ARR14(2)                                     ------>ZmHOX2a(2)    <-------TEIL            <---------GLK1(2)                ------>ZmHOX2a(2)  <---------ARR11(3) <---------KAN4(2)           --------->ARR14(2)        <---------YAB1             --------->ARR11(3) ---------->TaMYB80          <---------ARR14(2)      <-----------GT1     <-----------GT1   <---------ARR14(1)                 --------->YAB1<-------   tcttgattttacaattgatcgaagtaaatcactgtttgatcttatcgaatctctggaatatacatatcgaatttgatactatcagatttgtggatacgat  3989000                        --------->STY1(2)                        <---------ZAT2                        <---------STY1(2)                   ------>ZmHOX2a(2)                  <------ZmHOX2a(2)                 <---------ARR14(2)                --------->ATHB12   ---------->ID1     --------->ARR11(3) --------->ZAT2            ------>ZmHOX2a(1)  <-----------GT1 ------MYB46(3)  <---------ARR11(3)         <---------ZAT6  <---------ANAC58 >>>ARR1         --------->ARR14(2)    <---------ANAC58     <---------ANAC46                <-------- >>>ARR2      <---------HSFB2a(2)      <---------ANAC58     ----------->GT1             <---------WOX13(1) --YAB1       --------->HSFB2a(2)      <---------ANAC46     <---------ANAC58         <---------YAB1 -   tgttgatgaccttgttccagatccctagctcgtttgatatttcgtagtgttcctgatttgattcgtgaatttttcgtttttgaaaacatgatggatttgt  3989100                                                                                    --------->ALFIN1            --------->HSFB2a(2)                                                   <---------ZAT2      --------------->AGL15                                                     <-----------RAV1(2)      <---------------AGL15                                             <---------WOX13(1)    -------      ---------->ID1                                                  --------->ATHB12        <------ -GLK1(1)   <---------HSFB2a(2)  <---------TOE2(3)               ------>ZmHOX2a(2)--------->ZAT2 -------->MYB52(2)      <------ZmHOX2a(1)                      --------->ARR11(3) <---------At4g35610   gtttgtttctcgttttagaaaatttaggacttgttgagattagattgaacttaatcccattctttgatctctcgattgatattcaggtgggattgtagct  3989200                                                                                             --------                                                                                      ------>ZmHOX2a(2)                                                                                     --------->GLK1(2)                                                                                    --------->AGP1  <                                                                                    --------->ARR11(3)                                                                                    <---------ARR11(3)                                                                                    --------->ARR14(2)                                                       ----------->GT1              <---------ARR14(2)    <-----------RAV1(1)                                <---------ANAC46            <---------GLK1(1)-   <-------MYC3                                     --------->GLK1(2)              --------->GLK1(1)<   ------->MYC3                                    <---------GLK1(2)   --------->ALFIN1 ------>ZmHOX2a(1) -->At4g35610                          <---------At4g35610          <---------TOE2(3)<------ZmHOX2a(2) ---At4g35610            <------ZmHOX2a(1)     <<<<<<<<<<WRKY63 <----------DOF2   ----------->ARR10 -   ctccatgtgttgtactagtgcctcttaggacaatgttttggagcttatagtcaaattctgtgaaaactttgaggtgggaattgtgagatcctgtatgatg  3989300  Previous    Next  AGI:  At3g12570.1    Description:  FYD. similar to SLT1 (SODIUM- AND LITHIUM-TOLERANT 1) [Arabidopsis thaliana] (TAIR:AT2G37570.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN66716.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69222.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15631.1) Range:  from: 3988750    to: 3991059    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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