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Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                                             -------
     ------->GAMYB                                          <---------LBD16                ---------
    --------->MYB46(3)                           <----------ID1      ---------->DOF2    <---------KAN4(2)
  --------->MYB52(1)                           ---------->DOF2 ----------->GT1    --------->ALFIN1
 
cacactaacagacatgagaaaacaaactcccaatttcccaaaacatggcagaaagacaaaatttgggggaaaaaaagaagagaaattggggcataatcta  3918700
          ----------->GT1
         --------->HSFB2a(2)
         <---------HSFB2a(2)
    <---------ALFIN1
    --------->AtMYB61
   --------->MYB46(3)             --------->TOE2(3)
  ------>MYB83                    --------->YAB1                                          ------>MYB83
  ------>MYB46(1)                 --------->TOE1(3)                                       ------>MYB46(1)
 --------->ANAC46    <-----------GT1                         <----------DOF2  --------->GLK1(1)
--------->MYB46(3)  <-----------GT1                      ---------->ID1       <---------GLK1(1)
-->TOE2(3)--------->LBD16  <---------ARR11(3) --------->AtLEC2                <---------ARR14(2)
>GLK1(2)<---------LBD16 <-----------RAV1(2)<-------TEIL <-----------GT1       --------->ARR14(2)
 
aaacccaccactccggaaaaattttacccagatgttatcttaaatattcattcaaagtttttctcttttttgtttttggagaattctctcaccaacttac  3918800
                                                                                           =========
                                                                                           <--------
                                                                                           <--------
                                                                                          <---------DAG2
                                                                                   <---------ARR11(3)
                                                                                   <-----------ARR10
                                                                                   --------->ARR11(3)
                                                                                   --------->ARR14(2)
                                                                                   <---------ARR14(3)
                                                                                   --------->ARR14(3)
                                                                                   <---------AGP1  -
                                                                  <---------ARR14(2)     -----------
                                                                  --------->ARR14(2)<------ZmHOX2a(2)
                                                                 ==========================HOX2a_HOX2a
                                                                 ===========================HOX2a_HOX2a
                                                             ---------->DOF2   =====================
                                                   --------->ARR11(3)--------->ANAC58  <-----------GT1
                                             <------ZmHOX2a(1)   <------ZmHOX2a(1) <---------ARR14(2)
                                   --------->MYB46(3)      <---------ATHB12    ---------->DOF2    <-
                                 <-----------GT1   <---------ARR11(3)--------->ANAC58------>ZmHOX2a(2)
 
aatcgaatagcgaaatatcaatagaaaatttcagataaaccacctagaggataagatttcaaatcaaaggataggcaatagagaaagatcttaccttttt  3918900
                      --------->DEAR3(1)
                      <---------DEAR3(1)
                     --------->ATERF1(1)        ------>ZmHOX2a(2)
                    <---------ATERF1(1)        --------->CCA1(2)
                    <-----------HVH21          <------ZmHOX2a(2)
                   <---------O2               --------->ARR14(2)
                   --------->O2               --------->ARR11(3)
                   --------->ANAC46           <---------AGP1
       ------>ZmHOX2a(2)                      <---------ARR14(2)
     <---------ARR11(3)                       <-----------ARR10
     <---------ARR14(2)                       --------->GLK1(2)
     --------->ARR11(3)       ---------->DOF2 <---------ARR14(3)                        --------->AHL20(2)
=============================bZIP_DOF         --------->ARR14(3)               ------>NtERF2
--DOF2<------ZmHOX2a(2) <------NtERF2         <---------ARR11(3)               <---------ATERF1(1)
-DAG2--------->ARR14(2)------>NtERF2        ----------->ARR10                 --------->DEAR3(1)
---------->HVH21   ======================bZIP_DOF                          --------->ANAC58
------>AGL1        --------->TGA1a     --------->At4g35610                 --------->ANAC58  <------
=============================bZIP_DOF  <---------At4g35610        <---------ALFIN1------>ZmHOX2a(1)
----------HVH21    <---------TGA1a----------->RAV1(2)         ----------------------->TaNAC69(2)
 
gtgtcacagatcccaataccagacgtcgccgattaaagcctgagcagaagatctgatttttaagaagcccgacttctaacgcctcctccaaaaaattcga  3919000
                    ===================================HOX2a_HOX2a
                    ------>ZmHOX2a(2)
                   <------ZmHOX2a(2)
                   <---------GLK1(1)
                   ====================================HOX2a_HOX2a
                   --------->GLK1(1)
                  --------->ARR14(2)
                  --------->ARR11(3)
                  <---------ARR11(3)
                  --------->ARR14(3)
                  <---------ARR14(2)
                 <---------GLK1(1)
                 --------->GLK1(1)                                        ----------->HVH21
       <------ZmHOX2a(1)                                                --------->At4g35610
       ===================HOX2a_HOX2a                                   ----------->RAV1(2)
    --------->At4g35610                         ------>ZmHOX2a(1)       <---------At4g35610
    <---------At4g35610 --------->LBD16  <-----------GT1           --------->YAB1             <-----
----ID1====================HOX2a_HOX2a  <-----------GT1         <---------CCA1(2)             ------
 
caaattcagaggaatcacagagatctccgaaaaccctacaaattttccctcctctcagtgtctctctctatcttcacctgacttccctcttctctctcta  3919100
                                               <<<<<<<<<<E2Fd
                                               <<<<<<<<<<E2Fc
                                               <<<<<<<<<<E2Fb
                                               <<<<<<<<<<E2Fa
                                               <<<<<<<<<<E2Fe
                                               <<<<<<<<<<E2Ff
                                              ----------->GT1
                                            --------->LBD16                                    <----
                                     --------->ARR11(3)                                  --------->AHL20(1)
                      --------->TOE1(3)   <---------LBD16                                <---------AHL20(2)
                <------NtERF2        <---------ARR11(3)                                 --------->YAB1
               --------->LBD16  <------ZmHOX2a(1)                                       --------->AHL20(2)
              <---------RAP2.6(2)   <---------CCA1(2)     <---------LBD16     <---------ANAC55(2)---
      <---------YAB1  --------->TOE2(3)*TSS <---------LBD16 --------->LBD16   --------->ANAC55(2)<--
----HSFB2a(2) --------->ANAC46 ----------->GT1--------->LBD16          <-------TEIL------------>CBF
--->HSFB2a(2)<---------LBD16---------->DOF2<---------ANAC46--------->ANAC46  <-------TEIL<---------AHL20(1)
 
gaatggggtctgattatgcggcaaaccctaaaaaaggatatatctcgcgcgggaaaaacaacacggagaatacatacacatacgtatacaattatattcg  3919200
                                    ----------->HVH21
                        --------->ANAC58                                 --------->LBD16
                        --------->ANAC55(1)                             <---------ANAC55(1)     <---
                        --------->ANAC46                                <---------ANAC46       -----
                        --------->ANAC55(2)                             <---------ANAC58       -----
                        --------->ANAC58          --------->ANAC46      ----------->GT1       <-----
       --------->MYB46(3)  ------->TEIL <---------MYB59                 <---------ANAC58      ------
 <----------DOF2        <---------ANAC55(2)     <---------At5g28300     --------->ANAC55(2)   <-----
-----LBD16             --------------->AtSPL3  <-----------GT1          <---------ANAC55(2)   ------
------>ZAT18   <---------AHL20(2)  <-----------HVH21                 <---------MYB52(1)      <------
-------ZAT18  --------->AHL20(2)----------->RAV1(2)------>NtERF2   <-----------RAV1(1)      --------
 
cgcgctttcaaccactattaaatcgacacgtacccatctgtgacccaattttaccgccaaaacttacttactgttgcgtgaaacgctgagagggaaagat  3919300
          <------NtERF2
          --------->ATERF1(1)
         ------>NtERF2
        <---------ANAC46
       <---------LBD16
     ===========================================bZIP_DOF
     --------->O2
     <---------O2
     --------->TGA1a
     <---------TGA1a
  <---------MYB52(1)
  <------NtERF2
  <---------REM1(2)
  ----------->HVH21
 ------>NtERF2
 <-----------HVH21                                                                            <-----
 <-----------TGA1                                                                            -------
 <---------RAP2.6(3)                                                                        --------
--------->DEAR3(1)                                                                          --------
--------->RAP2.3(3)                                                                         --------
<---------ATERF1(2)                  <---------DOF5.7(2)                                   <--------
--------->ANAC46                   --------->DOF5.7(2)                   <---------TGA1a   <--------
--------->RAP2.6(2)            <---------PCF2         <---------ANAC58   <---------O2      <--------
----TEIL<---------DEAR3(1)   --------->ZAT18===============================RAV             <--------
---->CCA1(2)                --------->ALFIN1----------->RAV1(2)   =================bZIP_DOF---------
---->ARR14(1)               --------->ATERF1(1)       <---------ANAC58   <---------ANAC46  <--------
----ARR14(2)              --------->ALFIN1 <---------SPL7         ---------->DOF2      <---------WOX13(1)
--->ARR14(2)         --------->MYB52(1)    ------>NtERF2       ----------->RAV1(1)  <---------YAB1--
----GLK1(2)        --------->MYB46(3)---------->DOF2  --------->ANAC55(2)--------->O2--------->ATHB12
--->ARR11(1)       <---------MYB52(2)==============================================bZIP_DOF<--------
---HSFB2a(1) <---------------------WRI1--------->ANAC46 ----------->HVH21--------->TGA1a  <---------
--->ARR10--------->LBD16  <---------ANAC46--------->DEAR3(1)   ------>NtERF2        --------->ICU4--
 
tcgccgtcacggcggggtcgaaacaaacggagtgggccattaacgccgtctgggttttcgtgaccgcgacaaagcctcgtgtgagttatgattgggccca  3919400
----ALFIN1                       --------->At5g28300
-->MYB46(3)                   <---------LBD16
->TCP23                      <---------O2
->TCP15(2)                   --------->TGA1a                          <---------HSFB2a(2)
->TCP16(2)                   <---------TGA1a                      <-------GAMYB
-TCP11(2)                 ----------->HVH21                       <---------ANAC58
-ZAT18                   <-----------HVH21                        <---------ANAC58
-TCP16(1)        --------------->AGL15      --------->ARR14(2)   <------MYB46(1)            <-------
-PCF5            <---------------AGL15      <---------ARR14(2)   <------MYB83 <---------YAB1--------
>PCF2        <---------MYB52(1) --------->LBD16    <------------CBF   --------->HSFB2a(2) <---------LBD16
-TCP15(1)  <---------ANAC58  --------->O2--------->ANAC55(2)     <---------MYB46(3)     <---------ARR14(2)
------->TOE1(3) <-----------------AGL1   <---------ANAC55(2)    <---------AtMYB61       --------->ARR14(2)
-TCP20   ------>NtERF2 --------->MYB59 <-----------GT1        <---------MYB52(1)       ------>ZmHOX2a(1)
--TCP11(1) <---------ANAC58  =============================================MYC_MYB  <---------ZAT18
------->TOE2(3) <-----------------AGL2 --------->AHL20(2)   <---------HSFB2a(1)    --------->ZAT18
 
cccttaatacgatgccgtttctagtttaggtcacgcgggaaattacatatttgccattgtagaacgtttggttgcagaagtatgagtgtcctatccgcgg  3919500
                                                                                                   <
                                                                       <---------TGA1a             -
                                                                       <---------O2               <-
                                                                       --------->O2              <--
                                          <------ZmHOX2a(2)            --------->TGA1a           ---
                                         <---------ARR14(2)       --------->ANAC46               <--
                                --------->ALFIN1                  <---------ETT(1)               <--
                                <---------ZAT6             <---------ARR11(3)                    <--
                        <---------At4g35610  --------->LBD16<---------CCA1(1)                    ---
--LBD16                 --------->At4g35610------>ZmHOX2a(2)<---------RVE1(1)                    <--
->LBD16 *TSS        <-----------TGA1     --------->ARR14(2)--------->ARR11(3)       ------>ZmHOX2a(1)
 
atggattcagattaagtcttcttcgtcatcttcgagtgtgagtggatccagagagagaattagatatttccgacacgaggcaaattcctagtggctcatg  3919600
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AGI:  At3g12280.1   
Description:  RBR1 (RETINOBLASTOMA-RELATED 1). similar to retinoblastoma-related protein 1 [Populus tremula x Populus tremuloides] (GB:AAF61377.1); similar to retinoblastoma-related protein [Medicago sativa] (GB:AAY23367.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43963.1); contains InterPro domain Cyclin (InterPro:IPR006670); contains InterPro domain Retinoblastoma-associated protein, B-box (InterPro:IPR002719); contains InterPro domain Cyclin-related (InterPro:IPR013763); contains InterPro domain Retinoblastoma-associated protein, A-box (InterPro:IPR002720); contains InterPro domain Cyclin-like (InterPro:IPR011028)
Range:  from: 3913419    to: 3919140    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At3g12290.1   
Description:  tetrahydrofolate dehydrogenase/cyclohydrolase, putative. similar to tetrahydrofolate dehydrogenase/cyclohydrolase, putative [Arabidopsis thaliana] (TAIR:AT4G00620.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39977.1); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040); contains InterPro domain Tetrahydrofolate dehydrogenase/cyclohydrolase; (InterPro:IPR000672)
Range:  from: 3919509    to: 3921526    Orientation: Forward
Links:  TAIR  MIPS 
 
 
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