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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<------
ZmHOX2a(1)
------>
ZmHOX2a(1)
--------->
HSFB2a(2)
<---------
HSFB2a(2)
--------->
TOE1(2)
<-----------
HVH21
<---------
ARR14(2)
<---------
At4g35610
--------->
ARR14(2)
<-------
PIF5
--------->
At4g35610
----
--------->
LBD16
------->
PIF5
--------->
MYB59
<---------
ICU4
<--------
<---------
LBD16
----------->
RAV1(2)
--------->
ICU4
<----------
DOF2
<-----------
HVH21
<---------
ALFIN1
--------->
YAB1
<---------
YAB1
--------->
ANAC58
-------->
GLK1(2)
<---------
TOE1(2)
--------->
WOX13(1)
--------->
YAB1
--------->
ANAC58
aaattctatcaccgggtcctaggacttctccacctgcaaaaacaatcaggtcgagtaatgcatcataatcagttgataactaaacaagcctttgttacaa
3883000
------->
GAMYB
-------->
P
<----------
DOF2
--------->
WOX13(1)
------>
ZmHOX2a(1)
----------->
GT1
------>
ZmHOX2a(2)
--------->
ANAC58
<------
ZmHOX2a(2)
--------->
ANAC58
<---------
ARR14(2)
<-------
TEIL
<---------
ZAT14
------->
TEIL
<---------------
AtSPL3
<---------
SPL7
<------
ZmHOX2a(1)
<---------
ANAC46
--------->
TOE1(2)
=====================
HOX2a_HOX2a
--------->
TOE2(2)
====================
HOX2a_HOX2a
<---------------
AtSPL3
--------->
HSFB2a(2)
--------->
ARR14(2)
--------->
MYB52(1)
--------------->
AtSPL3
<---------
HSFB2a(2)
<---------
GLK1(2)
----------------->
AGL3
------->
GT1
--------->
SPL7
<---------
LBD16
--------->
ZAT18
<---------
ANAC58
<---------
MYB52(2)
---
GT1
<---------------
AtSPL8
<---------
LBD16
--------->
ALFIN1
<---------
ANAC58
---------->
DOF2
tgtaacatataaacgtacggtatcaaccaagtttctcgggaagaggagagtggacggatcctttggcttgtataggcctaaataaagaactaacaaattt
3883100
<---------
HSFB2a(2)
<---------
ICU4
<---------
AHL20(2)
<---------
YAB1
--------->
ICU4
<---------
ICU4
--------->
YAB1
--------->
AHL20(2)
<---------
ATHB12
<---------
ANAC46
--------->
ICU4
<---------
AHL20(2)
---------->
DOF2
-------->
HAHB4
<-----------
GT1
<---------
AHL20(2)
<---------
YAB1
<---------
AHL20(2)
--------->
ZAT18
<---------
ATHB51
--------->
ICU4
<---------
ANAC58
--------->
ZAT14
<---------
AHL20(2)
--------->
AHL20(2)
<---------
ANAC58
<---------
ZAT18
------>
MYB83
---------->
DOF2
<---------
AHL20(2)
-----
<---------
ZAT14
------>
MYB46(1)
----------->
GT1
--------->
AHL20(2)
<----
caagtgaacttatttaaaagaaccaaataattattctaaaagagaagaaaaaaatgaaattatttacttatatggcttgtataggcctaaatggcataca
3883200
<----------
TaMYB80
--------->
YAB1
--------->
GLK1(1)
------>
MYB83
--------->
ARR14(2)
<----------
DOF2
--------->
ANAC58
--------->
ARR11(3)
<---------
AHL20(2)
------>
MYB46(1)
<---------
ARR11(3)
--------->
AHL20(2)
<-----------
GT1
--------->
AHL20(2)
<---------
AHL20(1)
<---------
AHL20(2)
--------->
DAG2
<---------
ARR14(2)
--------->
AHL20(1)
--------->
AHL20(2)
<----------
DOF2
---------->
DOF2
<------
ZmHOX2a(1)
------>
GT1
--------->
MYB52(2)
--------->
ANAC58
<----------
ID1
--------->
DAG2
-----
ZAT6
<---------
MYB52(1)
--------->
ZAT6
---------->
DOF2
---------->
DOF2
--------
gttaataaattttgttagttctttattaattaacaccaagcatcttttttttttgttgaaaaagaaaaaggaatttaacaaaaaggatattcacaaaaag
3883300
<---------
MYB46(3)
<------------
CBF
------------>
CBF
---------->
DOF2
<-------
TEIL
<---------
AHL20(2)
--------->
ZAT14
--------->
YAB1
<---------
ZAT18
--------->
AHL20(2)
--------->
ZAT18
--------->
YAB1
--------------->
AtSPL8
<---------
YAB1
--------->
DAG2
--------->
ICU4
<---------------
AtSPL8
<---------
----------->
GT1
---------->
DOF2
------------>
CBF
---------->
DOF2
--------->
ARR11(3)
-->
DOF2
--------->
YAB1
--------->
GLK1(2)
---------->
DOF2
*
TSS
<---------
ARR11(3)
aaactagagaagtaataataaaaaggaaagaagaatctaatgtccaatagaaccccaaagtaaagtac
accaattgttgagagaagaagagttctttttt
3883400
----------->
ARR10
<---------
YAB1
<---------
ANAC58
<------
ZmHOX2a(1)
--------->
YAB1
<---------
ANAC46
<---------
TOE1(3)
------->
TEIL
<---------
ANAC58
<---------
ARR11(3)
<----------
ID1
--------->
ARR14(2)
--------->
ARR11(3)
---------->
DOF2
--------->
ICU4
-
-
DOF2
<---------
TOE2(3)
--------->
RAP2.6(2)
--------->
ICU4
<---------
ARR14(2)
<---------
TOE2(3)
tttcaaaggtatttaaggagaagagtcgcagtcgcaaaaagacgaatcgtaattgttgaagagagcaaat
atggcttgggatttgtttttatggatagtc
3883500
---------->
ID1
<-----------
HVH21
==============================================
bZIP_DOF
<---------
O2
=
--------->
O2
=
==========================
MYC_MYB
<-
<---------
TGA1a
--
<---------
ANAC58
<-
<---------
ANAC58
--
<---------
ZAT2
<----------
DOF2
<-
--------->
MYB52(2)
<----------
DOF2
--
--------->
DOF5.7(2)
<-----------
RAV1(2)
<---------
DAG2
--------->
TOE2(3)
<---------
MYB52(1)
<---------
ANAC58
<---------
ZAT18
<---------
GLK1(2)
--------->
TOE2(3)
<---------
DEAR3(2)
---------->
ID1
<---------
YAB1
<--
--------------------->
WRI1
<---------
ANAC58
--------------->
AtSPL8
<---------
TOE2(3)
<
----->
ZmHOX2a(1)
--------->
TGA1a
-------->
P
<----------
DOF2
<-----------
GT1
--------->
GLK1(2)
tccttcttcgttagcttggctctcgtcgcttccgtcttctaccag
gtaatctatctactttgtttgtccccttttactttccattaagattcttaaatcg
3883600
<---------
ZAT6
------>
ZmHOX2a(1)
------>
ZmHOX2a(2)
============================
HOX2a_HOX2a
=============
HOX2a_HOX2a
=============
HOX2a_HOX2a
============================
HOX2a_HOX2a
--------
ARR14(2)
------->
ARR14(2)
--------->
ETT(1)
--------
AGP1
<---------
WOX13(1)
<----------
DOF2
------->
AGP1
--------->
ATHB12
<---------
DAG2
<-----
--------
ARR11(3)
<---------
YAB1
--------->
ANAC46
--------
------->
ARR11(3)
------>
ZmHOX2a(1)
--------->
ANAC58
<---------
AHL20(2)
-------
GLK1(1)
<---------
ARR14(2)
--------->
ANAC58
--------->
AHL20(2)
------
ZmHOX2a(2)
--------->
ARR14(2)
--------->
DEAR3(1)
--------->
At4g35610
agatctgtccttactgttcaaatcctgattgtcggaattgtacttgtgaaaaaacaccgagcaacttagctttttgttcgaattagctaaaaaattagga
3883700
<---------
MYB52(1)
<---------
MYB46(3)
<---------
DEAR3(2)
<-------
<---------
TOE2(2)
--------->
AHL20(2)
------>
ZmHOX2a(1)
<---------
TOE1(2)
<---------
YAB1
----------->
GT1
--------->
TOE1(3)
-
ZmHOX2a(1)
<----------
DOF2
--------------->
AtSPL8
<---------
AHL20(2)
--------->
TOE2(3)
->
MYB59
<-----------
GT1
<---------
DEAR3(1)
<-----------
GT1
<---------
HSFB2a(2)
<---------
YAB1
atggaacaattttcctttgtgttcgtcggttttgtactaaatacaattgacaattttttgggtccagagaggtttcattgtttatccttaatcttatgct
3883800
<---------
WRKY38(1)
<---------
ANAC58
<---------
WRKY12
<---------
ANAC46
<---------
YAB1
<---------
ANAC58
<---------
ANAC58
<<<<<<<<<<
WRKY26
--------->
ATHB12
<---------
ANAC46
<<<<<<<<<<
WRKY38
<---------
AHL20(2)
---------->
DOF2
<---------
ANAC58
<<<<<<<<<<
WRKY43
--------->
AHL20(2)
--
YAB1
<---------
YAB1
<---------
AtLEC2
<---------
YAB1
<---------
WOX13(1)
tctaactcaaagttgttcttagttctgatttggattgtctgcaaggcttgtatatgatacttggtcaattgagacatatagttgattaattgcgagttat
3883900
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AGI:
At3g12180.1
Description:
cornichon family protein. similar to cornichon family protein [Arabidopsis thaliana] (TAIR:AT1G12390.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN64231.1); contains InterPro domain Cornichon; (InterPro:IPR003377)
Range:
from: 3883369
to: 3884812
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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