Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                     <------ZmHOX2a(1)                ------>ZmHOX2a(1)                --------->HSFB2a(2)                <---------HSFB2a(2)               --------->TOE1(2)            <-----------HVH21            <---------ARR14(2)                                      <---------At4g35610            --------->ARR14(2)<-------PIF5                          --------->At4g35610          ----          --------->LBD16     ------->PIF5  --------->MYB59    <---------ICU4               <--------        <---------LBD16      ----------->RAV1(2)              --------->ICU4           <----------DOF2    <-----------HVH21      <---------ALFIN1--------->YAB1     <---------YAB1       --------->ANAC58 -------->GLK1(2)<---------TOE1(2)      --------->WOX13(1)  --------->YAB1         --------->ANAC58   aaattctatcaccgggtcctaggacttctccacctgcaaaaacaatcaggtcgagtaatgcatcataatcagttgataactaaacaagcctttgttacaa  3883000                        ------->GAMYB                      -------->P                          <----------DOF2                     --------->WOX13(1)                   ------>ZmHOX2a(1)               ----------->GT1                          ------>ZmHOX2a(2)              --------->ANAC58                         <------ZmHOX2a(2)              --------->ANAC58                        <---------ARR14(2)             <-------TEIL                       <---------ZAT14             ------->TEIL                     <---------------AtSPL3           <---------SPL7                 <------ZmHOX2a(1)    <---------ANAC46           --------->TOE1(2)              =====================HOX2a_HOX2a           --------->TOE2(2)              ====================HOX2a_HOX2a         <---------------AtSPL3   --------->HSFB2a(2) --------->ARR14(2)                --------->MYB52(1)         --------------->AtSPL3   <---------HSFB2a(2) <---------GLK1(2)   ----------------->AGL3 ------->GT1 --------->SPL7      <---------LBD16--------->ZAT18<---------ANAC58       <---------MYB52(2) ---GT1  <---------------AtSPL8 <---------LBD16--------->ALFIN1<---------ANAC58 ---------->DOF2   tgtaacatataaacgtacggtatcaaccaagtttctcgggaagaggagagtggacggatcctttggcttgtataggcctaaataaagaactaacaaattt  3883100                                 <---------HSFB2a(2)                            <---------ICU4                            <---------AHL20(2)                           <---------YAB1                           --------->ICU4                         <---------ICU4                         --------->YAB1                        --------->AHL20(2)                        <---------ATHB12                                <---------ANAC46                        --------->ICU4                       <---------AHL20(2)             ---------->DOF2-------->HAHB4                   <-----------GT1           <---------AHL20(2) <---------YAB1             <---------AHL20(2)  --------->ZAT18       <---------ATHB51                --------->ICU4  <---------ANAC58  --------->ZAT14       <---------AHL20(2)     --------->AHL20(2)       <---------ANAC58  <---------ZAT18     ------>MYB83 ---------->DOF2      <---------AHL20(2)                      -----  <---------ZAT14     ------>MYB46(1)     ----------->GT1--------->AHL20(2)                     <----   caagtgaacttatttaaaagaaccaaataattattctaaaagagaagaaaaaaatgaaattatttacttatatggcttgtataggcctaaatggcataca  3883200                                                                                    <----------TaMYB80                                     --------->YAB1                                 --------->GLK1(1)                                   ------>MYB83                                    --------->ARR14(2)                  <----------DOF2  --------->ANAC58                                --------->ARR11(3)   <---------AHL20(2)              ------>MYB46(1)                                 <---------ARR11(3)   --------->AHL20(2)       <-----------GT1                            --------->AHL20(2)   <---------AHL20(1)  <---------AHL20(2)                       --------->DAG2     <---------ARR14(2)   --------->AHL20(1)  --------->AHL20(2)<----------DOF2       ---------->DOF2    <------ZmHOX2a(1) ------>GT1  --------->MYB52(2)    --------->ANAC58        <----------ID1      --------->DAG2 -----ZAT6 <---------MYB52(1) --------->ZAT6             ---------->DOF2      ---------->DOF2--------   gttaataaattttgttagttctttattaattaacaccaagcatcttttttttttgttgaaaaagaaaaaggaatttaacaaaaaggatattcacaaaaag  3883300                                                                       <---------MYB46(3)                                                                     <------------CBF                                                                  ------------>CBF                  ---------->DOF2                              <-------TEIL                <---------AHL20(2)                             --------->ZAT14                --------->YAB1                                 <---------ZAT18                --------->AHL20(2)                             --------->ZAT18             --------->YAB1                                --------------->AtSPL8            <---------YAB1                                 --------->DAG2            --------->ICU4                                 <---------------AtSPL8          <---------       ----------->GT1 ---------->DOF2  ------------>CBF  ---------->DOF2               --------->ARR11(3) -->DOF2  --------->YAB1       --------->GLK1(2)     ---------->DOF2 *TSS               <---------ARR11(3)   aaactagagaagtaataataaaaaggaaagaagaatctaatgtccaatagaaccccaaagtaaagtacaccaattgttgagagaagaagagttctttttt  3883400                  ----------->ARR10           <---------YAB1           <---------ANAC58              <------ZmHOX2a(1)             --------->YAB1             <---------ANAC46            <---------TOE1(3)             ------->TEIL                 <---------ANAC58     <---------ARR11(3)             <----------ID1               --------->ARR14(2)     --------->ARR11(3)           ---------->DOF2                --------->ICU4                     - -DOF2      <---------TOE2(3)--------->RAP2.6(2) --------->ICU4  <---------ARR14(2)     <---------TOE2(3)   tttcaaaggtatttaaggagaagagtcgcagtcgcaaaaagacgaatcgtaattgttgaagagagcaaatatggcttgggatttgtttttatggatagtc  3883500                      ---------->ID1                     <-----------HVH21                    ==============================================bZIP_DOF                    <---------O2                                                                    =                    --------->O2                                                                    =                    ==========================MYC_MYB                                              <-                    <---------TGA1a                                                                --           <---------ANAC58                                                                        <-           <---------ANAC58                                                                        --          <---------ZAT2                                                  <----------DOF2          <-         --------->MYB52(2)                                         <----------DOF2                --       --------->DOF5.7(2)             <-----------RAV1(2)         <---------DAG2       --------->TOE2(3)       <---------MYB52(1)    <---------ANAC58                   <---------ZAT18      <---------GLK1(2)      --------->TOE2(3) <---------DEAR3(2)                     ---------->ID1      <---------YAB1 <--   --------------------->WRI1<---------ANAC58               --------------->AtSPL8 <---------TOE2(3)< ----->ZmHOX2a(1)   --------->TGA1a  -------->P        <----------DOF2 <-----------GT1--------->GLK1(2)   tccttcttcgttagcttggctctcgtcgcttccgtcttctaccaggtaatctatctactttgtttgtccccttttactttccattaagattcttaaatcg  3883600           <---------ZAT6       ------>ZmHOX2a(1) ------>ZmHOX2a(2) ============================HOX2a_HOX2a =============HOX2a_HOX2a =============HOX2a_HOX2a ============================HOX2a_HOX2a --------ARR14(2) ------->ARR14(2)            --------->ETT(1) --------AGP1            <---------WOX13(1)                        <----------DOF2 ------->AGP1          --------->ATHB12                            <---------DAG2              <----- --------ARR11(3)     <---------YAB1                    --------->ANAC46                     -------- ------->ARR11(3)     ------>ZmHOX2a(1)                 --------->ANAC58                <---------AHL20(2) -------GLK1(1)   <---------ARR14(2)                    --------->ANAC58                --------->AHL20(2) ------ZmHOX2a(2) --------->ARR14(2)                  --------->DEAR3(1)          --------->At4g35610   agatctgtccttactgttcaaatcctgattgtcggaattgtacttgtgaaaaaacaccgagcaacttagctttttgttcgaattagctaaaaaattagga  3883700                          <---------MYB52(1)                        <---------MYB46(3)                        <---------DEAR3(2)                                                   <-------                       <---------TOE2(2)           --------->AHL20(2)               ------>ZmHOX2a(1)                       <---------TOE1(2)<---------YAB1             ----------->GT1 --------->TOE1(3) -ZmHOX2a(1)<----------DOF2 --------------->AtSPL8 <---------AHL20(2)              --------->TOE2(3) ->MYB59<-----------GT1<---------DEAR3(1)    <-----------GT1 <---------HSFB2a(2) <---------YAB1   atggaacaattttcctttgtgttcgtcggttttgtactaaatacaattgacaattttttgggtccagagaggtttcattgtttatccttaatcttatgct  3883800                                                              <---------WRKY38(1)        <---------ANAC58                                                              <---------WRKY12           <---------ANAC46                                                   <---------YAB1                        <---------ANAC58                                           <---------ANAC58  <<<<<<<<<<WRKY26       --------->ATHB12                                           <---------ANAC46  <<<<<<<<<<WRKY38      <---------AHL20(2)     ---------->DOF2                       <---------ANAC58  <<<<<<<<<<WRKY43      --------->AHL20(2) --YAB1               <---------YAB1  <---------AtLEC2<---------YAB1              <---------WOX13(1)   tctaactcaaagttgttcttagttctgatttggattgtctgcaaggcttgtatatgatacttggtcaattgagacatatagttgattaattgcgagttat  3883900  Previous    Next  AGI:  At3g12180.1    Description:  cornichon family protein. similar to cornichon family protein [Arabidopsis thaliana] (TAIR:AT1G12390.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN64231.1); contains InterPro domain Cornichon; (InterPro:IPR003377) Range:  from: 3883369    to: 3884812    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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