Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                               <---------ARR14(2)                                                             <---------GLK1(2)                                                             --------->ARR14(2)                 <----                                                       <---------ARR14(2)                    <-------                                                       --------->ARR14(2)                 <---------At4g35610                                                      ------>MYB46(1)                     <---------ZAT2               --------->ANAC58                       ------>MYB83     --------->ANAC58  ------>ZmHOX2a(1)               --------->ANAC46                     <---------MYB59    --------->ANAC46  <-----------RAV1(1)               --------->ANAC58            --------->PCF2  --------->LBD16 <---------GLK1(1) --------         <---------AHL20(2)  ------>MYB83  --------->PCF5<-----------------AG   ------>ZmHOX2a(1) <<<         --------->AHL20(2)  ------>MYB46(1)        --------->AtMYB61  --------->ANAC58----------->RAV1(2)      --------->WOX13(1)<-----------GT1 <---------AtMYB61<---------LBD16   --------->GLK1(1) --------   atcgaattcaattaaacacgaaaatgttaccttccataggctgaggtccctcgaccaaatccggattcggaacaagcatctcctcgtcttcctgctgctg  3770000                                                                                          --------->YAB1                                                         <---------LBD16            --------->ANAC58           ----------->GT1                              ------->GAMYB               --------->ANAC58     --------->LBD16                                  ------>MYB46(1)               --------->ANAC46   <---------LBD16                                    -------->P      --------->TOE2(3)  <---------ATHB12 -------HVH21                                         ------>MYB83   --------->ANAC58  --------->WOX13(1) --At4g35610                              --------->TOE2(3)          ----------->GT1--------->RAP2.6(2) ->ZAT2   >>>>>>>>>TBF1                   --------->TOE1(3)--------->LBD16       <---------ARR14(2) <<<<<<WRKY18            <---------At4g35610         <---------ALFIN1--------->ANAC58--------->LBD16 ->At4g35610             --------->At4g35610     <-----------GT1--------->YAB1   --------->ARR14(2)   tcaaaaccggaagaagaaaaatcagacttctgactatttagaaaccctaatttcccaaccccgtgatcagaacgtcaaaacagaaaccgcaatcacaaaa  3770100                                --------->ARR11(3)     --------->ANAC46           --------->GLK1(2)            --------->At4g35610     --------->ANAC58           <---------ARR11(3)  --------->MYB52(1)                      <--------     <----------ID1            --------->RVE1(1) --------->TOE1(3)                          ---------     --------->ANAC58 <---------ANAC46           --------->TOE2(3)                   <---------AtMYB61   --------->MYB52(1) ----------->GT1  --------->AHL20(2) <------ZmHOX2a(2)          --------->MYB59   aaaaaaaacgacacaaatacagaagcgtataaaaaatctaagaaaataaaaccctaatggatcagcgaaacgaagccgaagcaggtttaggtcgaatacg  3770200                                                                                   <---------YAB1                                                                                 --------->YAB1                                                                             <------NtERF2                                                                           <---------ANAC46                                                                           <---------DEAR3(1)                                                                          <------NtERF2                                                                          --------->ATERF1(1)                                                                          --------->At4g35610                                                                          <---------ABI4(1)                                                                          <---------LBD16                                                                          <---------At4g35610                                                                         <---------ORA47(2)                                                                         <---------DEAR4(2)                                                                         <---------RAP2.3(1)                                                                         <---------RRTF1(1)                                                                         <---------RAP2.6(1)                                                                         ------>NtERF2                                                                         <---------ATERF1(1)                                                                         <---------ERF1                                                                        <---------RRTF1(3)                                                                        --------->ATERF1(2)                                                                        <---------ATERF1(2)                                                                        <---------ANAC46                                                                        --------->ALFIN1                                                                        <---------DEAR3(1)                                                                        <---------RAP2.6(2)                                                                        <---------RAP2.3(3)                                                                        --------->DEAR3(1)                                                                        <---------RRTF1(2)                                                                        <---------RAP2.3(2)                                                                       --------->RAP2.3(1)                                               <------ZmHOX2a(1)       --------->ATERF1(1)               --------->ANAC58           <--------ATHB1               <------NtERF2--------->YAB1         --------->ANAC58                 --------->YAB1               <---------ABI4(1)         <---------MYB52(2)              <---------YAB1               <---------RAP2.3(1)         --------->ANAC58                <---------ATHB51             <---------RRTF1(1)      --------->TOE1(2)                --------->YAB1                 <---------ATERF1(1)           <      --------->TOE2(2)          --------->ANAC46                    <---------RAP2.3(2)  --------->ATHB12 -ARR14(2)     --------->ANAC46  --------->ANAC58                  --------->MYB52(1)     <---------ICU4 >ARR14(2)     --------->ANAC58  --------->ANAC58  --------->GLK1(2) <---------DEAR3(1)  <---------YAB1   cgtagaaacccacgaacacgacatcaaatcgacacaaacaacaataataggataatcggagattacatctagcggcggcggagtcatcatagtcattgct  3770300                    ------>ZmHOX2a(2)       --------->MYB52(1)                   <------ZmHOX2a(2)       <---------SPL7                  <---------ARR14(2)      --------->DEAR3(1)                <---------DEAR3(2)       --------->RAP2.3(1)                        --------->ALFIN1             <-----------HVH21           <------NtERF2                        >>>>>>>>>TBF1          <---------At5g28300         <---------ABI4(2)                 >>>>>>>>>TBF1      --------->ANAC58 ---------MYB52(1)--------->ARR14(2)  --------->ZAT18       ---------->DOF2>>>>>>>>>TBF1   --------->ANAC58   ccgatagtgattcacggtcggatcgagagaagtagaagagagcgccgaacagagagaacaatgaaaggggagaagaagaagaagaagtgagggaagaaat  3770400                     --------->WOX13(1)                   *TSS                                                   <---------CCA1(1)                   <------ZmHOX2a(2)                                      <---------RVE1(1)                  <---------ARR11(3)                                     --------->ARR11(3)                  --------->ARR11(3)                              <---------ICU4             =============HOX2a_HOX2a                <----------DOF2   <---------YAB1     <---------TOE1(3)             <------ZmHOX2a(1)                       <---------DAG2  <-----------GT1      <---------TOE2(3)       <---------HSFB2a(2)                   <----------DOF2     <---------YAB1          --------->MYB52(1)       --------->HSFB2a(2)           --------->At4g35610       <------ZmHOX2a(1)<-----------GT1 --------->ARR11(3)------------>CBF  <---------At4g35610      ----------->GT1   --------->ZAT6     <-   agagaacttgcagaaggagagatcaatcgcttatttctctgcttactctttctcacttttcgataggataattacgatattttcactaaattaagggttt  3770500                                                                      --------->ANAC58                                                                      --------->ANAC58                                                                 ----------->HVH21                                                                <-----------HVH21                                                               <---------ANAC55(2)            <---------ATHB12                                   --------->O2               <---------ARR14(2)        ------------>CBF                        <---------ZAT6 --------->ANAC55(2)        --------->ARR14(2)   <---------YAB1                         <---------LBD16      <---------TGA1a       ----------->RAV1(1) --------->YAB1                 --------->AHL20(2)             --------->TGA1a      <----------ID1 -----------CBF<---------YAB1   <---------AHL20(2)             <---------O2  --------->YAB1  --------   ctattgtaattccaattactatttggattcagatttatatgtttccctgagtgttcgtctgagaaacgtgacaggctaatgagaatgcgacatatacgac  3770600                                          ------->MYC2                                          <-------MYC3                                         --------->ANAC55(1)                                         <---------ANAC55(2)                                         <---------O2                                         <---------TGA1a                                         --------->ANAC55(2)                                         --------->bZIP60(2)                               <-------MYC3                               <-------MYC2                               ------->MYC2                               <-------MYC4                               <-------PIF5                               ------->MYC4                               ------->MYC3                               ------->PIF5----------->HVH21                              <---------ANAC46                              --------->O2<-------MYC2                              =====================bZIP_bZIP        =========================bZIP_DOF                  --------->AHL20(2)     --------->TGA1a            --------->TGA1a                  --------->YAB1         --------->ANAC58        ----------->HVH21                 <---------ATHB12        --------->ANAC58      --------->ALFIN1               --------->WOX13(1)        --------->O2          <---------------AtSPL3    <---------ANAC58        <---------bZIP60(1)   <---------TGA1a                <---------ANAC46     <---------DAG2        --------->bZIP60(1)   --------->TGA1a                --------->ALFIN1     <----------DOF2     --------->GLK1(2)        <---------O2------->MYC3 ----------->HVH21      --------->ZAT14    <---------GLK1(2)<-----------GT1     --------->ANAC46 <---------DEAR3(1)  <---------ZAT18   --------->At4g35610      <---------ALFIN1           ----------->TGA1       <---------ZAT14   -----   <---------At4g35610     <---------REM1(2)     ----------->HVH21  <---------TGA1a      <---------ANAC58 ->ANAC46<-----------HVH21<-----------------PIF3(1)<---------At5g28300    <---------DEAR3(1)    <----   tcttcagatgctgtcaccaattaaaactctccacgtgtattacacgtgactgtgaccgtgacggtgtgggacgtcttcggtgaactttttggcttctcta  3770700                                                                    ----------->GT1                                                                   <---------TOE2(3)                                                                 <---------AHL20(2)                                                             --------->AHL20(2)                                             <-----------GT1 <---------AHL20(2) --------->At4g35610                 <-----------GT1      ----------->GT1 <---------At4g35610            <----------DOF2        ---------->DOF2 ---->ZAT14               --------------->AtSPL8     ------>ZmHOX2a(1)                             <- -----ZAT14    ------>ZmHOX2a(1)<---------DAG2      --------->TOE2(3)      --------->YAB1   ---------   ctctgcttcgaaatgtccttaagtttgttttgaactttttttctatattactatcctaaaagtttaaataatgtaaatgaaaatgcaaatttcataaatt  3770800                                       <---------AHL20(2)                                       <---------ARR11(3)                                       <---------AHL20(1)                                       --------->ARR11(3)                                       --------->AHL20(1)  --------->AHL20(2)                                       --------->AHL20(2)<----------DOF2                          <--                                 ----------->GT1         ======================================MADS_MADS <------ZmHOX2a(1)           --------->ARR11(3)          --------->TOE2(3)     <---------------AGL15 --------TOE2(3)             <---------GLK1(2)           --------------->AGL15 --------------->AGL15 >AHL20(2)                 ----------->ARR10     <-----------GT1             ----------->GT1      ---   ttaggaaatttcatacagaagttaatgcttagattttgtaatatattgttgtcacattactttaaatgtgaataatgtatactaaaaatagtagaacaat  3770900  Previous    Next  AGI:  At3g11910.1    Description:  ubiquitin-specific protease, putative. Identical to Ubiquitin carboxyl-terminal hydrolase 13 (UBP13) [Arabidopsis Thaliana] (GB:Q84WU2;GB:Q0WVD3;GB:Q9FU99;GB:Q9SF08); similar to UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12) [Arabidopsis thaliana] (TAIR:AT5G06600.3); similar to UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12), ubiquitin-specific protease [Arabidopsis thaliana] (TAIR:AT5G06600.1); similar to UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12), ubiquitin-specific protease [Arabidopsis thaliana] (TAIR:AT5G06600.2); similar to CM0545.290.nc [Lotus japonicus] (GB:BAF98601.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39873.1); similar to unnam Range:  from: 3761394    to: 3770419    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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