Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                    --------->GLK1(2)                                                                      --------->ARR14(2)                                                      <---------TOE2(3)      <---------ZAT18                                              ---------->DOF2         <---------GLK1(2)                  --------->ZAT14         <---------ANAC58            <---------ARR14(2)           ----------->GT1                <---------ANAC55(2)       --------->LBD16        --------->DAG2  ---------->DOF2   <---------ANAC46  --------->ZAT6   --------->ZAT14        <       ---------->DOF2 <---------WRKY45   <---------ANAC58<-----------GT1    <---------ZAT14<--------   aacaaaacaaaaagtgtaactatagtcaaagaaattagaaaatttcgtaaaagattaatgtaacaatacccagaaactctgcacaatctggatttaacat  3671700                                                --------->ANAC58                                                --------->ANAC55(2)                                                <---------ANAC55(2)                                                --------->ANAC46                                                <---------O2                                                --------->ANAC58                                                --------->O2                                             --------->WRKY18(1)                                    -                                             ----------->HVH21                                      <             --------->YAB1                 <-----------HVH21  --------->ARR11(3)         ---------->DOF2 ----------DOF2                            --------->LBD16     <---------ARR11(3)   <---------ALFIN1- ---GT1 <-------TEIL                     <---------LBD16      <---------CCA1(2)<-----------HVH21    <   gtcttttagtttcattcatcaatttgttttgagtctccatgtctccggtcacgcgattcaacttatatcttctctcagaactgtcaacacttgaaaggag  3671800           --------->AHL20(2)                                              <---------TOE2(3)           <---------AHL20(2)                                             ---------->DOF2 <------ZmHOX2a(2)                                                     <-----------TBP -------->ARR11(3)            --------->MYB46(3)                      <----------DOF2               - ---------ARR14(2)     ------->GAMYB                                 <---------------AGL15     <----- -------->ARR14(2)  ----------->RAV1(1)      *TSS                    --------------->AGL15     <----- ---------ARR11(3)  --------->MYB52(1)   --------->YAB1             ----------------->AGL3     ------   aagatcgagagaattaatgagacaacagagaaaccactaaaaatcaaaactttgcaaaataagtgaagaagccttttaaagtaaaccaagtgaagagagc  3671900                                                               <------ZmHOX2a(1)                                                          ------>ZmHOX2a(2)                                                         =============HOX2a_HOX2a        ====================RAV                          <------ZmHOX2a(2)        ----------->RAV1(2)                             --------->ARR14(2)        --------->At4g35610                             --------->MYB52(1)        <---------At4g35610                             <---------ARR14(2)      --------->CCA1(2)       ------->TEIL                                   --------->DEAR3(1)   ------->GAMYB     <---------ZAT18                                  --------->MYB46(3)  <---------ANAC46 ----------->CBF                <---------GLK1(2)   --------->MYB52(1)   >>>>>>>>>MYB98 ----ZAT18                    ----------->ARR10   --------->MYB46(3)    --------->MYB52(1) ----ZAT14           <------ZmHOX2a(1)            <---------MYB55(2)  <---------MYB52(2) --->ZAT18      ----------->RAV1(1) <----------DOF2<---------ALFIN1---------->DOF2   acaacaatgcacctgaaacaacaggagtagattagatactttggagaactgaaccaccgatcggaggaagaaagtaacggagagacggagttacccaagg  3672000                                                                                         <---------CCA1(2)                                                                                       <---------ANAC58                                                                                       <---------ANAC58                                                                                  <---------MYB52(1)                                                                                 <-----------TGA1                                                                                 <-----------HVH21                                                                                <---------ANAC58                                                                                --------->ETT(2)                                                         <---------bZIP60(1)    <---------bZIP60(1)                                                         --------->bZIP60(2)    --------->TGA2(1)                                                         <---------bZIP60(2)    <---------TGA2(1)                                                         --------->O2           --------->bZIP60(1)                                                         <---------O2           <---------ETT(2)                                                         --------->TGA1a        <---------ANAC46                                                         --------->DEAR3(1)     <---------ANAC58               --------->ARR14(2)                        --------->bZIP60(1)   <------NtERF2               <---------ARR14(2)                        <---------TGA1a     --------->ALFIN1          --------->ANAC58                            ----------->HVH21    <---------ANAC46      ----          --------->ANAC58 ----------->GT1          --------->ANAC58       <---------ANAC58      ----   >>>>>>>>>TBF1           --------->YAB1           --------->ANAC58       <---------ANAC58    <-----   tagaagaagaagacgcatatttgcagcaatagtaatacgacctcgttttgagtaacgcgacgtcgttttatgagtttgggtgtcgtcaggcttatctcca  3672100                                                                                                    <                                                     <---------ZAT2                                 <                                                     --------->At4g35610                           --                                                     <---------At4g35610                           <-                                                   <--------P                                      <-                                                 <------MYB83                                      <-                                                 <------MYB46(1)                               <-----                           ----------->HVH21    --------->MYB59                      --------->At4g35610                          <---------WOX13(1)    --------->MYB111(1)                  <---------At4g35610        --------->ZAT6    *TSS                  --------->MYB111(2)              --------->ALFIN1<--- ----->ANAC46            <------------CBF       <---------MYB46(3)             <---------ANAC46<----- ----->bZIP60(2)        --------->ATHB12        --------->MYB46(2)           --------->ALFIN1  <----- ----ALFIN1   ---------->DOF2         --------->CCA1(2)                  ---------->DOF2       <-----   cctcatacttccactacaaagagaggtgattgacagatagataagagtgtttggtagctcagactcagagagtcacaaagtgtgtgtagcagcaatggcg  3672200    <---------ANAC58    <---------ANAC58    <---------ANAC46 <---------MYB52(1) -------GAMYB ---------At4g35610 ------->MYB52(2) --------MYB46(3) ----------RAV1(1) --------DEAR3(2) ----ANAC58 ---NtERF2                                                      <----------DOF2    <----------DOF2 ----RAP2.6(2)                                       ---------->DOF2              <---------ANAC58 ----ANAC46           <---------CCA1(2)          --------->HSFB2a(2)              <---------ANAC58 ----ANAC58  --------->MYB46(3)                  <---------HSFB2a(2) ------>ZmHOX2a(1)           <---   tctgttgcttcttcaactactctcatctcttctccctcttctagggtttttccagcaaagtcttcactttcctctccatctgtttctttccttcgaaccc  3672300                                   <---------GLK1(1)                                              <--              --------->At4g35610  --------->GLK1(1)                                              ---              <---------At4g35610 <---------ARR14(2)                               <-----------HVH21             --------->ARR14(2)   <---------GLK1(2)                  <-----------HVH21            <--             ------->TEIL         --------->ARR14(2)         <---------ALFIN1   --------->At4g35610           --------->LBD16    <---------LBD16            <---------At4g35610    <---------At4g35610<-         <---------LBD16   <---------At4g35610           <---------ZAT2  <------NtERF2---------->DOF2       ------>ZmHOX2a(1)   --------->At4g35610           --------->At4g35610 <----------DOF2  ------- -------DOF2 <---------ARR14(2) --------->LBD16          --------->ZAT2<---------DEAR3(1)   <--------   tttcttctccttccgcatctgcttctctccgctccggatttgctcgacgctcttccctcagctccacttctcgtcggagctttgctgtcaaagcccaggc  3672400 -------SPL7 ------>At5g28300 -------RAP2.6(3) --------MYB52(1)          <---------YAB1                                            ------>ZmHOX2a(1) -->ANAC46            <----------DOF2       <---------GLK1(1)             <-----------GT1 ---RAV1(2)     <---------ETT(2)    <-----------HVH21 --------->ATHB12 <---------GLK1(1)   cgtaagtttatctaaatgtcgatacttttcttattcgatgtcattgaaatctgaattcattagcctgttatagatttcactctcttcctacttgttagcc  3672500                     <---------TOE1(3)                     <---------TOE2(3)                    <-----------GT1                    <---------DOF5.7(2)               <---------At4g35610                  <---------ANAC46                    --------->MYB52(1)             <---------At4g35610            ----------->HVH21 <                  --------->DOF5.7(2)          <---------ARR14(2)                <---------WOX13(1)<-        <---------LBD16                        --------->ARR14(2)--------->DAG2 <---------ANAC58 <---       <---------ANAC46               ----------->HVH21         ---------->DOF2 <---------ANAC58 <---   ctataggttttggggaaatagttaacgatttataggttatgcgaccgtgtttctgcagattactcgaaaagttcagaaatttgagtgacattttcgttta  3672600  Previous    Next  AGI:  At3g11620.1    Description:  similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ73127.1); contains domain SSF53474 (SSF53474); contains domain G3DSA:3.40.50.1820 (G3DSA:3.40.50.1820); contains domain PTHR13390 (PTHR13390) Range:  from: 3669325    to: 3671845    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g11630.1    Description:  2-cys peroxiredoxin, chloroplast (BAS1). Identical to 2-Cys peroxiredoxin BAS1, chloroplast precursor (BAS1) [Arabidopsis Thaliana] (GB:Q96291;GB:P92938;GB:Q8L5U1;GB:Q9S7Y0); similar to 2-cys peroxiredoxin, chloroplast, putative [Arabidopsis thaliana] (TAIR:AT5G06290.1); similar to 2-Cys peroxiredoxin BAS1, chloroplast precursor (Thiol-specific antioxidant protein) (GB:O24364); contains InterPro domain Thioredoxin-like fold (InterPro:IPR012336); contains InterPro domain Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; (InterPro:IPR000866); contains InterPro domain Thioredoxin fold (InterPro:IPR012335) Range:  from: 3672126    to: 3674081    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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