Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                              --------->YAB1                           <---------ATHB12                         --------->WOX13(1)                  --------->ANAC58                   --------->ANAC58                          --------->ANAC58                   --------->ANAC58                          --------->ANAC55(2)                 <-----------GT1                         --------->YAB1                            --            <---------RVE1(1)                       <---------ZAT2                       --------->GLK1(2)           <---------AHL20(1)                       <---------At4g35610                 <---------ARR14(2)     --------->YAB1--------->ANAC46                 --------->ZAT2                 <-----------GT1---     --------->TOE2(3) <---------ATHB12         --------->ANAC46        ----------->RAV1(1)       <-- >ZmHOX2a(2)<---------CCA1(1)                --------->MYB46(3)    <---------AHL20(2)   --------->ARR14(2) --ARR11(3)--------->ARR11(3)       --------->TOE1(2)  -------->P  --------->AHL20(2)   <---------GLK1(2) ->ARR11(3)<---------ARR11(3) --------->At4g35610   --------->At4g35610 --------->MYB52(1)      -----   tattcaatcttaagatatttcacgaatcaatcagataacattcgaaaaccactcagctaccataagtaataaaacaacagtgattaaaccgattctctta  3607900                                       --------->HSFC1(2)                              <---------DEAR3(2)                                       --------->HSFB2a(1)                             --------->MYB55(2)                                       <---------HSFB2a(1)                         <---------DEAR3(1)                                       <---------ZAT2                              --------->ANAC46                                       --------->At4g35610                        --------->SPL7                                       <---------HSFC1(2)                         ------>MYB83                               <------MYB46(1)                                  --------->TOE2(2)                          ------>ZmHOX2a(2)                                     --------->AtMYB61             ====================HOX2a_HOX2a                       --------->At4g35610 <---------MYB46(3)             ===================HOX2a_HOX2a                        --------->ZAT2 ------>MYB46(1)             ------>ZmHOX2a(1) <------MYB83                        <---------ZAT2--------->MYB52(1)        --------->GLK1(1)<------ZmHOX2a(2)   <---------LBD16 ------>NtERF2      --------->TOE1(2)        <---------At4g35610    <---------MYB46(3)      <---------ANAC58        --------->MYB46(3)        <---------ZAT2  --------->ARR14(2)--------->At4g35610<---------LBD16  -------->P<-------GAMYB <---------GLK1(2)      <---------ARR14(2)--------->ZAT2     --------->LBD16  ------>MYB46(1) ------->ANAC46       --------->LBD16  <---------At4g35610  <---------ANAC58  ------>MYB83 ------>HSFB2a(2)   ------->GAMYB --------->ETT(1)     <---------ANAC58     <---------MYB111(2) -------HSFB2a(2) -------->P  <---------AtMYB61--------->LBD16     <---------At4g35610<---------DEAR3(1) --->P  --------->At4g35610  <---------MYB52(1)------>NtERF2<---------ANAC58<---------ALFIN1  -------   ccagaaactgagctcctagtaaccccgatccgttggtcggaagctgctccggctattacttgccgcgcgagcttccctccaacctacggcggttgagaaa  3608000                                                          <---------------AGL15                                                          <---------HSFB2a(2)                                               --------->ATERF1(1)                                               <------NtERF2                                              ------>NtERF2                                              <---------RAP2.3(1)                                              <---------ATERF1(1)                                              --------->RAP2.6(2)                                             --------->ATERF1(2)                                             <---------ATERF1(2)                                             <---------ANAC46                                            --------->ATERF1(1)                                            <------NtERF2 --------------->AGL15                                            --------->At4g35610                                           <---------RRTF1(1)                                           <---------RAP2.3(1)                                           <---------ATERF1(1)                                          <---------DEAR3(1)                                          <---------RAP2.6(2)                                          <---------RRTF1(2)                                          <---------RRTF1(3)                                     xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  --------->GLK1(2)                                   <------ZmHOX2a(1)     ----------------->AGL1                                 <---------TOE2(3)    --------->GLK1(1)  --------->ARR14(2)                            --------->ATHB12--------->RAP2.3(1)          <---------ARR14(2)                          <----------DOF2 <---------RAP2.3(2)           --------->RVE1(1)                        ----------->GT1 --------->MYB52(1)--------->HSFB2a(2)      >>>>>>>>>TBF1 --->DOF2     ----------->GT1<------------CBF<---------DEAR3(1)    <------ZmHOX2a(1)          -------   gatgatgaagaagagaaggtttaatctggtttattgaggaaatagcggcggcaacgatttccagatggaggaaagtatctgagaagaagaaatggtctat  3608100                              --------->ZAT6                       <---------ANAC55(2)                       <---------ANAC55(1)                       <---------ANAC46                       <---------ANAC58                       --------->ANAC55(2)                       <---------ANAC58                <------MYB46(1)                <------MYB83<-----------GT1                                                         <               <---------AtMYB61                                                                   --              <---------MYB55(1)                                                                  ---       <-----------GT1<---------TOE2(3)         <---------LBD16                               ------- -->WOX13(1) <---------MYB52(1)         --------->LBD16  <----------DOF2                     <-------   cacagattaatacccgtttggttttacgtataactctattcccccaaattttcggattactttgggctacaggcccatactatttgggccttattctcat  3608200                                                                                           <---------DEAR3(2)                                                                                           <---------At4g35610                                                                                           --------->At4g35610                                                                                         <------NtERF2                                                                                        <-----------HVH21                                                                                        ------>NtERF2                                                                                        <---------ATERF1(1)                                                                                       --------->DEAR3(1)                                                                                       <---------O2                                                                                       --------->O2                                                                                      --------->ATERF1(1)                                                                                      --------->RAP2.3(1)                                                                                     --------->LBD16                                                                                     ------>NtERF2                                                                                    --------->ANAC46                                                                                <---------GLK1(1)                                                                                --------->GLK1(1)   <                                                                               <-----------ARR10   --                                                                               --------->ARR14(2)  --                                                                               <---------ARR14(2)  <-                                                                            --------->ANAC58  <------                                            --------->LBD16                 --------->ANAC46  ------>NtERF2                                          <---------LBD16                   --------->ANAC55(2)<-----                                      <---------ICU4                        --------->ANAC58  -------                                   <---------ICU4                      <---------------AtSPL3 <------ ---------ICU4                  --------->YAB1                        <----------DOF2<---------ATERF1(1) ------->ICU4                --------->ANAC58                      --------->ANAC58 --------->DEAR3(1) ------>AHL20(2)   <-----------GT1--------->ICU4         ------>ZmHOX2a(2) <---------LBD16<---------DEAR3(1) -->YAB1     <---------ANAC58--------->ANAC46          <---------ARR11(3)<---------SPL7--------->RAP2.3(2) --YAB1      <---------ANAC58--------->ANAC58        <---------YAB1--------->ANAC58<---------LBD16<--   aaaaattagaactatgcgttttaacccaaacaagtcataatcagcgcgggagaccatgatcgtcgttacaagctttgtacggaactccgccgtcgctgcg  3608300        ------>NtERF2       --------->ANAC46       --------->ANAC58       --------->ANAC58 <---------ANAC58   <-------TEIL<---------ZAT2 <---------ANAC58   <---------TOE1(2) <---------ANAC46   --------->SPL7           <---------ATHB12 ------NtERF2       ------->TEIL<---------At4g35610                            <---------WRKY38(1) ---->NtERF2        <---------TOE2(2)      --------->WOX13(1)                  <---------WRKY12 ------->ABI4(2)  --------->TOE2(2)--------->ANAC58                           --------->WRKY18(1) --------MYB46(3) <---------SPL7--------->At4g35610                          <-----------HVH21 ---ABI4(1)       --------->TOE1(2)--------->ANAC58                   <----------DOF2 ----DEAR3(1)    <---------HSFB2a(1)   <---------CCA1(2)         --------->ARR11(3) -->ZAT14        --------->HSFB2a(1)   --------->GLK1(1)         <---------ARR11(3) ---ZAT14   --------->AtLEC2    --------->ZAT2                  <---------CCA1(2)              ------ -------DEAR3(1)<---------------AtSPL3 <---------GLK1(1)   ------->TEIL <-----------GT1  <---------MYB52(1)   gtggcttcgacgccatggaacgtacgtttgagagagctcgcatatcagtcattgttttctgaatctatatctctttaccggtcaatgctccgttctggtt  3608400                                                                                      <-------MYC3                                                                                      <-------MYC2 --                                                                                      ------->MYC3 <-                                                                                      <-------PIF5<--                                                                                      ------->MYC2---                                                                                      ------->PIF5<--                                                                                     <---------TGA1a                                                                                     --------->bZIP60(2)                                                                                     --------->ANAC58                                                                                     --------->ANAC58                                                                                     ================                                                                                     ================                                                                                     ================                                                                                     --------->ANAC55(2)                                                                                     <---------ANAC55(2)                                                                                     --------->ANAC46                                                                         --------->At4g35610   ------                                                                     --------->MYB52(1)----------->HVH21                                                                     ----------->RAV1(1)      -------                                                                  ------>NtERF2      ================                                                                 --------->LBD16     --------->TGA1a                                                                 ------>NtERF2       <---------O2<---        ------>NtERF2                               <---------At4g35610--------->MYB46(3)    --------     ------>NtERF2                              ===============================================bZIP_DOF    --------->ANAC46                            <----------DOF2--------->ATERF1(1)   --------->O2<---    ----------->HVH21 <----------DOF2     <---------ANAC58     <---------LBD16     <------------OsbHLH66 --->ARR14(2)   <----------DOF2           <---------ANAC58 <-----------HVH21<-------TEIL    ---------   cttctcccgacgcgttctctttccctttcattctcaagtcttgtgcttccctttcgctccctgtctccggccaacagctacattgccacgtgaccaaagg  3608500   <---------ANAC46                                                      --------->ANAC58   <---------ANAC58                                                      --------->ANAC55(2)   <---------ANAC58                                                      <---------ANAC55(2) ------->ATERF1(1)                                                       --------->ANAC55(1) ------GAMYB                                                             --------->ANAC46 -------MYB46(3)                                                         --------->ANAC58 ------>MYB55(2)                                                      <-------TEIL -------DEAR3(2)                                                   --------->At4g35610 =======MYC_MYB                                                    <---------At4g35610              - ======MYC_MYB                                               <---------ANAC58                      <- ==bZIP_DOF                                                  <-------GAMYB                      ----- ------>AtMYB77                                             <------MYB46(1)                    ------ -->DAG2                                                    <---------MYB46(3)              <-------- ==bZIP_DOF                                                 <------MYB83------->TEIL        <-------- ------DEAR3(1)                                            <---------AtMYB61  XXXXXXXXXXXXXXXXXXXX>MIR395A/D/E -->DOF2                 --------->RAP2.6(3)               --------->MYB59  ---------->DOF2 --------- ------RAP2.6(2)        --------->MYB52(1)    ----------->GT1<---------ANAC58--------->DAG2 --------- ->DOF2         <---------MYB52(1)  ------>ZmHOX2a(2)    <---------MYB52(1) =========================   cggttgcgagactgagccgtttgtactaacggctctgatctcaatgtattgtaaatgcggtttggttgcagatgcacgtaaagtgttcgaagaaaatcct  3608600        --------->ZAT2        <---------ZAT2        <---------At4g35610        --------->At4g35610   --------->TGA1a   --------->ANAC58                             --------->At4g35610   --------->ANAC58                        --------->ZAT18   =====================================bZIP_DOF<---------At4g35610 -------->WRKY18(1)                        <-------TEIL                             <---------ANAC58 ----------HVH21                           --------->ZAT14                          <---------ANAC58 ->ZmHOX2a(1)                      --------->ARR11(3)                       --------->ARR14(2) --->TOE2(3)                       <---------ARR14(2)                    <---------ANAC46 -ARR11(3)                        <---------GLK1(1)                      <---------ANAC58 -ARR14(2)        --------->MYB52(2)       <---------REM1(2)             <---------ANAC58 >ARR14(2)        <---------MYB46(3)       <---------ZAT14   --------->ZAT18<---------ARR14(2) >ARR11(3)    <---------ZAT6 <----------DOF2  --------->ANAC46       <---------At4g35610      <------ ============bZIP_DOF<-----------GT1 <---------LBD16        <-----------HVH21       <---------ANAC46   cagtcaagtcagcttagtgtttgttacaatgctttgatatctgggtacacagcaaactcgaaggtcactgatgctgcgtatatgtttcgtagaatgaagg  3608700                   ----------->GT1               >>>>>>>>>GATA-3               >>>>>>>>>GATA-2            --------->ANAC58                                  <--------               >>>>>>>>>GATA-4            --------->ANAC58------>ZmHOX2a(1)                 <--------               >>>>>>>>>GATA-1           <---------LBD16  --------->LBD16            <---------REM1(2)               <---------ARR14(2)     ----------------------->TaNAC69(2)      <------MYB83 --------->WRKY18(1)         <---------DEAR4(1)        <---------ANAC58   --------->ARR14(2)      <------MYB46(1)    <---------ANAC58         <---------ANAC58         <---------ARR14(2)     <---------AtMYB61    <---------ANAC58         <---------ANAC58      --------->ANAC58    <---------ANAC58   <----------    <---------ANAC46        --------->ATHB12      ------->TEIL         <---------ANAC46   <--------ZAP1 ---TOE2(3)    --------->ARR14(2)  <---------ANAC58--------->ANAC58    <---------ANAC58   --------->At5g28300   aaactggtgtgtctgtggattcagttacaatgcttgggcttgtcccgctatgcacggttcctgaatacctctggcttgggaggtctcttcacggtcaatg  3608800  Previous    Next  AGI:  At3g11460.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G30700.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15895.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 3608256    to: 3610127    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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