Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                   <---------AHL20(2)             --------->ICU4           <---------ANAC58                                     ------->TEIL           <---------ANAC58                                  --------->AtLEC2    <------MYB46(1)                                          --------->ANAC46    <---------ANAC58                                    --------->ORA47(1)                    -------    <---------ANAC46                                   --------->DEAR3(1)               <------MYB83    <---------ANAC58                                 <---------At5g28300                <------MYB46(1)    <------MYB83 --------->AHL20(2)                 <-----------GT1                  --------->CCA1(2)   --------->MYB59                          <---------AHL20(2)  <-----------GT1   ----------->ARR10   ctagttgggtttggcatgtttaatttcaatttccacttggttcaatttttatgttcaccgtccatgtaacttgactagtagcatgagatttggtttgtcc  3499400                                                 <---------GLK1(2)                                   <---------ANAC55(2)                   ------>MYB83                    --------->ALFIN1    <---------WOX13(1)               ------>MYB46(1)                    ----------->GT1--------->ANAC55(1)                 <---------MYB111(2)                  <---------ANAC58 --------->ANAC55(2)                 <---------MYB46(2)         ---                  <---------ANAC58 --------->ANAC58                   --------->ANAC46           <<<< --->ID1          <---------ANAC46 --------->ANAC58  <---------------AGL15     ------>ZmHOX2a(1) <<<<   ctattgaaacaataggtatagggtgtgaaacattgaaacgtaattgactcaaattctcaaataggtttcttcaccaaactcctcttgttttgtctaacaa  3499500                                                                                             <-------                                                                                             <-------                                                                                         <---------YAB1                                                                                        <---------AHL20(2)                                                                                      <---------YAB1                                                                                   --------->AHL20(2)                                               ---------->DOF2                     <---------AHL20(1)                                             --------->AHL20(2)                    <---------AHL20(2)                                             <---------AHL20(2)                    --------->AHL20(1)                                        <---------MYB52(1)                    <---------AHL20(2)                                       <-----------HVH21                      <---------AHL20(1) ------>TOE2(3)                        <---------RAP2.6(3)                    --------->AHL20(1)    < <<<<<ARR1    --------->YAB1           <-----------TGA1     <---------YAB1    --------->AHL20(2)    < <<<<<ARR2  --------->AHL20(2)        >>>>>>>>>>AtTINY2<---------ZAT6        --------->AHL20(2) <----   tcttatatagtcactaaaataatgtgtataaattttgctaccgtcatttaaaagttagtgtcatgaaacatatgcctcattatattttattattttcgtt  3499600                                                                         --------->REM1(2)                                                                        --------->ALFIN1                                     --------------->AGL15             --------->LBD16                                     <---------------AGL15      --------->YAB1                            <---------bZIP60(1)                <---------ATHB12 --ANAC58                   --------->TGA2(1)                --------->WOX13(1) --ANAC58                   <---------TGA2(1)              <------ZmHOX2a(2)     --------->TOE2(3) ----------DOF2             --------->bZIP60(1)   <---------AHL20(2)  --------->ANAC55(2) ---------DAG2    <-----------GT1   ----------------->AG  <---------ARR11(3)     --------->TOE1(3)  < -----ZAT18   <----------DOF2  --------->YAB1    --------->AHL20(2)   <---------ANAC55(2) <---------ANAC46   cactttatttcaaaggctttaaactatatgacatcataaccaaaacaagaattaaaacgagatcaatcaaacccgtgttgaaacctcaacttgtgtctaa  3499700                               --------->AtMYB61                            --------->ANAC58                            --------->ANAC58                            --------->ANAC46                       --------->TGA1a   --------->AHL20(2)                 --------->ARR11(3)      <---------AHL20(2)                 <---------ARR11(3)      --------->AHL20(1)                --------->RVE1(1)        <---------AHL20(1)                --------->CCA1(1)     --------->YAB1                <---------MYB59              --------->AHL20(2)  --------->ZAT6                   --------->At4g35610      ---------    <-----------HVH21  --------->bZIP60(1)             <----------DOF2                    --------->TOE1(2)   --------->ANAC46    <---------bZIP60(1)   <-----------GT1       <---------At4g35610   <---------ANAC58 <---------At5g28300   ===========================================bZIP_DOF               <---------ANAC58 ---------WRKY18(1)    --------->ANAC46 --------->AHL20(2)     <---------REM1(1)--------->ANAC46   attgaccgtcacaaaaaaaaatctcacatcacaccatcactaataaatttccttctcctttcaagttgtagctaacttatataagacataagcgtgcgaa  3499800                                                                                                 ----                                                                                              -------                                                                                         <---------ATHB12                                ---------->DOF2                        <----------DOF2<---------ALFIN1                             --------->ANAC58                     <---------ARR11(3)  --------->AtMYB61 >SPL7 *TSS                  --------->ANAC58               <---------ALFIN1         --------->MYB46(3)   ccagagacagagatagaaattgagagacgataagcaaagtagaaaacacaagtttctctcacacacattatctctttctctattaccaccactcattcat  3499900             --------->AHL20(2)          --------->AtMYB61        ------>MYB46(1)       --------->ANAC46                                          <---------ANAC58                 ---      --------->MYB46(3)                                         <---------ANAC58       <---------ANAC46   --------->GLK1(1)          <----------DOF2    --------->At4g35610                --------->GLK1(2) ----->MYB52(1)  --------->AHL20(2)              <---------At4g35610               <---------GLK1(2) -->YAB1------>MYB83---------->DOF2     <---------LBD16 <---------ARR11(3)      --------->YAB1-------   aacagaaacccaccaaaaaataaaaagagagacttttcactctggggagagagctcaagttctaatggcgaacttggtcttatcagaatgtggtatacga  3500000                          --------->ARR14(2)                    ------->GAMYB         --------->GLK1(2)<---------ARR14(2)         <---------ARR14(2)<------ZmHOX2a(2)         <-----------ARR10--------->AGP1         --------->ARR14(2)=================HOX2a_HOX2a                    <<<<<<<<<TBF1        <---------GLK1(2) <---------ARR11(3)    ----------->RAV1(1)     <<<<<<<<<TBF1    --------->LBD16<---------ALFIN1         --------->MYB46(3)        XXXXXXXXXXXXXXXXXXXX>MIR838 ------>AtMYB61 --------->ANAC46          ----------->RAV1(1)      <----------DOF2            <------ -->ANAC46    --------->ANAC46       ------>ZmHOX2a(1)       --------->AtMYB61             --------->YAB1   cctctccccagaatctacacaacacccagatccaatttcctctccaacaacaacaaattcagaccatcactttcttcttcttcttacaaaacatcatcat  3500100                                                                            ------>NtERF2                                                                         <-----------TGA1                                                                        --------->ANAC46                                                                      --------->MYB52(1)                                                                      <---------DOF5.7(2)                                                               --------->ANAC58                                                               --------->ANAC58                                                               --------->ANAC46                                                 <-------GAMYB--------->ZAT18       <----------DOF2 --------->ANAC46  <---------ARR14(2) <---------At4g35610                 ----- ------>ZmHOX2a(1)   <-----------GT1    <------ZmHOX2a(1)   --------->At4g35610               <<<<<<< ---ICU4  <---------AtMYB61      <-------TEIL   <---------DEAR3(1)  --------->DOF5.7(2)  <------ZmHOX2a(1)   ctcctctgtcttttggtctgaattcacgagatgggttcacgaggaattgggcgttgaatgtgagcacaccattaacgacaccaatatttgaggagtctcc  3500200                                      --------->DEAR3(1)                                      <---------ALFIN1                                     --------->ORA47(2)                                     --------->ATERF1(1)                                     --------->DEAR4(2)                                    <---------RAP2.3(1)                                  <-------TEIL                                  --------->ZAT18                                  <---------ZAT18                                 --------->ALFIN1                                <-------PIF5                                ------->PIF5                               --------->ZAT2                               <---------ZAT2                               <---------At4g35610                             <-----------RAV1(2)                       <-------TEIL <---------ATERF1(1)        --------->ARR11(3) <------ZmHOX2a(2)                                              <------MYB46(1)        <---------ARR11(3) ======================HOX2a_HOX2a                              <------MYB83      ----------->GT1 --------->GLK1(2)                                              <-----------RAV1(1)    <------ZmHOX2a(1) --------->CCA1(2)------>NtERF2   <---------At4g35610   <---------MYB59      ---    ==============================HOX2a_HOX2a          --------->At4g35610   --------->TOE2(3) <----- ---->ATHB12          --------->ARR14(1)  ------>ZmHOX2a(1)           --------->At4g35610 ----------- <<<<<<<<<<LFY       --------->ARR11(1)<---------ATERF1(1)         <---------At4g35610    <---------ANAC46   attggaggaagataataaacagagattcgatccaggtgcgcctcctccgttcaatttagctgatattagagcagctatacctaagcattgttgggttaag  3500300  Previous    Next  AGI:  At3g11170.1    Description:  FAD7 (FATTY ACID DESATURASE 7); omega-3 fatty acid desaturase. Identical to Omega-3 fatty acid desaturase, chloroplast precursor (FAD7) [Arabidopsis Thaliana] (GB:P46310); similar to FAD8 (FATTY ACID DESATURASE 8), omega-3 fatty acid desaturase [Arabidopsis thaliana] (TAIR:AT5G05580.1); similar to chloroplast omega-3 fatty acid desaturase [Brassica napus] (GB:AAT02410.1); similar to omega-3 fatty acid desaturase [Descurainia sophia] (GB:ABK91880.1); similar to chloroplast omega-3 fatty acid desaturase [Brassica juncea] (GB:CAB85467.1); contains InterPro domain Fatty acid desaturase, type 1; (InterPro:IPR005804); contains InterPro domain Fatt Range:  from: 3499807    to: 3502458    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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