Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                      <---------ARR11(3)                      --------->ANAC58                                    --------->ARR11(3)                --------->ANAC58                                   <---------GLK1(1)        <-----------HVH21                                 --------->YAB1            --------->ANAC46 --------->ANAC46                           ----------->RAV1(1)      --------->YAB1    --------->ANAC58  <------------CBF                   ----------->RAV1(2)              <---------ICU4  --------->MYB52(1) --------->ATHB12                   --------->At4g35610            *TSS    --------->SPL7    --------->ANAC58   <-----                   ====================RAV       --------->YAB1 --------->ANAC58    <---------ZAT6 ->YAB1            <---------At4g35610        <-----------GT1   --------->ANAC58<------------CBF   <-   gttctctatctctcgttcttcacctgatgcaacattgatatctgtgttttacaataatcgtccgtcacacaaacgaaaacgacattgtgttattgggctt  3423500                                                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                            --------->YAB1                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             --------->AHL20(2)                               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)---   <---------AHL20(2)  <---------GLK1(2)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      -------  --------->AHL20(2)<---------WOX13(1)          --------->TOE1(3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) -----DOF2 <----------DOF2 <---------YAB1       --------->TOE2(3)  <---------TOE2(3)          ------- --------AHL20(2) --------->ATHB12  <------------CBF       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <--   tttatttaatgggctttaaatgatagattattatagcccattgaataaaaccctaaaaccatctctattgaggtatctcataagagtttctcacaattaa  3423600               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)           <---------YAB1          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)         --------->YAB1         <---------ICU4         <---------ZAT14                                       --------->AHL20(2)       --------->AHL20(1)       --------->ZAT14                                       <---------AHL20(2)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    <---------TGA1a                   ------------>CBF      --------->YAB1           --------->ALFIN1--------->TGA1a                <---------MYB46(3)    --------->AHL20(2)         ----------->GT1 --------->O2                <------------CBF   --------->YAB1       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       --------->At4g35610   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)<---------YAB1  --------->AHL20(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)          <xxxxxxxxxxxxxxxxxxxsmallRNA(i2) ------>AHL20(2)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) -->AHL20(2)--------->YAB1    xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) -->YAB1--------->ICU4<------ZmHOX2a(1)        <---------O2  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  <- -------AHL20(2)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  --------->YAB1<---------At4g35610    <---------   aaaaataaaaataatgaaaatgaaggagagagagtgtagaaagtttctcacttgagtcatgacaattctcatcttactattggttcaattttttaacaaa  3423700                                   --------->AHL20(1)                                   <---------AHL20(1)                                 <---------TOE2(3)                                <---------AHL20(2)                                --------->AHL20(2)                           <---------At4g35610                                --------->YAB1                               --------->At4g35610                              --------->AHL20(2)                             xxxxxxxxxxxxxxx>smallRNA(le3)                              <---------AHL20(2)                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                             --------->YAB1                                  <---------GLK1(1)                           <---------AHL20(2)                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                        <---------AHL20(1)                         --------->YAB1                        --------->AHL20(2)                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           --------->AHL20(2)--------->TOE2(3)                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <----------DOF2       --------->AHL20(1)                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <---------DAG2   --------->AHL20(2)                 <----------DOF2xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  --------------->AGL15--------->YAB1 <---------AHL20(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) ----------GT1  --------->YAB1<---------YAB1   <---------HSFB2a(2) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) --GT1 <---------AHL20(2) --------->YAB1       --------->HSFB2a(2)<---------YAB1     xxxxxxxxxxxxxxxx   attacttttttaatcaaataatcaaatataatattaatattttttttttttagaaactttgtgagtttatcatggatggagatgccctaatttcccctaa  3423800                                                  <---------LBD16                       --------->RAP2.3(1)                                            ------>ZmHOX2a(1)                           <------NtERF2                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         <---------ATERF1(1)                                        ------>ZmHOX2a(1)                              ------>NtERF2                                      --------->HSFB2a(1)                              --------->LBD16                                      <---------HSFC1(2)                              --------->ATERF1(2)                                      ------>ZmHOX2a(2)                               --------->DEAR3(1)                                      --------->HSFC1(2)                              <---------DEAR3(1)                                      =============HOX2a_HOX2a                       --------->ATERF1(1)                                     ==============HOX2a_HOX2a                       --------->DEAR3(2)                                     <------ZmHOX2a(2)                              <---------ZAT2  x                                    --------->ARR14(2)                              <---------At4g35610                                    --------->ARR11(3)         <------------CBF     --------->At4g35610                                    <---------ARR14(2)  <---------ANAC58            --------->ZAT2  <                                    <---------ARR11(3)  <---------ANAC58          ---------->CDC5  <-     ------->TEILxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<------NtERF2                <-----------RAV1(2)   <---------ZAT14                 <---------GLK1(1)--------->LBD16     <----------DOF2<xxxxxxxxxxxxx   --------->ZAT14----------->GT1  --------->GLK1(1)------>NtERF2       <---------DAG2<---------ATERF1(2) xxxxxxx>smallRNA(fl3) ---------->DOF2<---------HSFB2a(1)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<   taccctgtacttatcgaaacgagtaaaaagcctagagagatccttcctcttcgccgggacttgcacattgtctgcttttctccctcagccggcgaaaatg  3423900                <---------ANAC58                <---------ANAC58             <---------MYB52(1)     ------->TEIL     <---------ANAC58 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ---------ANAC58<---------ANAC55(1) --------MYB46(3)     <---------ANAC58                                    <---------GLK1(1) xxxxxxxxxxsmallRNA(le3)       <---------GLK1(2)                          --------->GLK1(1) ---------ANAC58<---------ANAC46------->TEIL                     <---------AHL20(2)   gtgagtgcatcttctgtttcgtgtgcctgcattgaatctcttcgatttgtattctcaacttatttgttttatttggatttcagaccaagagaacgaagaa  3424000                                          --------->LBD16                               <---------TOE1(2)                                          ------>ZmHOX2a(1)        <----------DOF2      <---------TOE2(2)                                        ----------->RAV1(2)        --------->TOE2(3) --------->ATHB12                                   <---------ATHB12          --------->ANAC58       <-------TEIL                     <---------ANAC46--------->WOX13(1)      --------->ANAC58  <---------MYB52(1)               <---------ARR14(2)--------->GLK1(1)      <---------TOE2(3)     <-------GAMYB       ---         --------->ETT(1) <---------ARR14(2)           ---------->DOF2       <-----------RAV1(1)  ---   ggctagaattgtcggaaaatatggtgagtattcagaaatcaatcctgggctatagtttaaagtatgcaactttagacttctgttgattcataggttgaaa  3424100                                                                                ------>ZmHOX2a(1)                                                                            --------->ARR14(2)                                                                            <---------ARR14(2)                                                                        <---------WOX13(1)                                                                      <---------ICU4                                                                      <--------ATHB1          <------                                              --------->ZAT14         -------->HAHB4     ------->TEIL                                              <---------ZAT14         --------->ATHB12   --------->GLK1(2)                                  --------->ARR11(3)                 <---------ATHB12    --------->ARR14(2)                                  <---------ARR11(3)                 <---------YAB1      <---------ARR14(2) ------>TOE2(3)                  <---------At4g35610                 --------->ICU4  --------->YAB1 ------>TOE1(3)      --------->ICU4<------ZmHOX2a(2)            --------->YAB1 --------->TOE2(3)   ccttaaaccttgtttctctagtaagaattagtttcagatcatgaacagagaactgaaatgtctctattgtaatgattgaatcctcaatctgaatctgttt  3424200                                <------NtERF2                         --------->CCA1(2)                        <---------ARR14(2)                        --------->ARR14(2)        <------ZmHOX2a(2)                   <-------TEIL------>NtERF2     --------->ARR11(3)    <---------ANAC58  --------->ANAC58          --------->At4g35610                                 -    <---------ANAC58  --------->ANAC46       <---------At4g35610                                  ---    <---------ANAC46  --------->ANAC58    ===============HOX2a_HOX2a     --------->ANAC46         <-- ---MYB52(1)      --------->CCA1(2)       <------ZmHOX2a(1)           <---------WRKY38(1)         <--   gtgtttgtgtgtttgcaaaggtacacgatatggtgccagtcttaggaagcagatcaagaagatggaagtgagtcaacacaacaagtacttctgtgagttc  3424300            <---------YAB1    --------------->AtSPL8                           <---------ATHB12    <---------------AtSPL8                <-------GAMYB    --------------->AtSPL3               <---------ANAC46    --------->DAG2                       <---------MYB46(3)  ---------->DOF2                       <---------------------WRI1      --------->ARR14(2) -------->LBD16           ------>ZmHOX2a(1)  xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ------>At4g35610    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              <---------ARR14(2)          x -------LBD16   <-----------GT1        <XXXXXXXXXXXXXXXXXXXXMIR397A    <---------CCA1(2)            < -------At4g35610   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)<---------TOE2(3)<-----------ARR10----------->GT1   tgcggaaaggtactctcattaccatctcctaagtaacttattgtcgttgaattcaatgaggttttcagtttgcaaatctctgttttgcattttgtgaaaa  3424400  Previous    Next  AGI:  At3g10940.1    Description:  protein phosphatase-related. similar to ATPTPKIS1/DSP4/SEX4 (STARCH-EXCESS 4), polysaccharide binding / protein tyrosine/serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT3G52180.1); similar to ATPTPKIS1/DSP4/SEX4 (STARCH-EXCESS 4), protein tyrosine/serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT3G52180.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO41479.1); contains InterPro domain Protein-tyrosine phosphatase, dual specificity; (InterPro:IPR000340); contains InterPro domain Protein-tyrosine phosphatase; (InterPro:IPR000387) Range:  from: 3422083    to: 3423450    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g10950.1    Description:  60S ribosomal protein L37a (RPL37aB). Identical to Putative 60S ribosomal protein L37a-1 (RPL37AB) [Arabidopsis Thaliana] (GB:Q9SRK6); similar to 60S ribosomal protein L37a (RPL37aC) [Arabidopsis thaliana] (TAIR:AT3G60245.1); similar to 60S ribosomal protein L37a [Capsicum chinense] (GB:CAI48073.1); similar to unknown [Populus trichocarpa] (GB:ABK93424.1); similar to Os01g0679700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043868.1); contains InterPro domain Ribosomal protein L37ae; (InterPro:IPR002674); contains InterPro domain Ribosomal protein L37ae/L37e, core; (InterPro:IPR011331); contains InterPro domain Ribosomal protein, zinc-b Range:  from: 3423898    to: 3424571    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version