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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                               --------->ICU4
                                                                            <------NtERF2
                                                                           <------NtERF2
                                                                           ------>NtERF2
                                                                           <---------RAP2.6(3)
                                                                          <---------ATERF1(2)
                                                                          --------->RAP2.6(2)
                                                                          --------->RAP2.3(2)
                                                                          --------->RAP2.3(3)
                                                                          --------->ANAC58
                                                                          --------->DREB2C(2)
                                    --------->ANAC46                      --------->RRTF1(2)
                                    --------->ANAC58                      --------->DEAR3(1)
                                    --------->ANAC58    <---------ANAC58  --------->ATERF1(2)
                                  <---------ALFIN1      <---------ANAC58  --------->ANAC58
                            =================================bZIP_DOF     --------->RRTF1(3)
------->ATHB12              ---------->DOF2        <---------TGA1a       --------->RAP2.3(1)
-------YAB1             --------->TOE2(3)          --------->TGA1a       --------->ATERF1(1)
----ZmHOX2a(2)         --------->ANAC46    <---------MYB46(3)            <---------RAP2.6(2)
----->ARR11(3)         ----------->GT1     --------->MYB52(2)            --------->ERF1
------ARR11(3)    <---------MYB59--------->ZAT18   --------->O2         <---------ATERF1(1)
-->DOF2        <------ZmHOX2a(1) <---------ZAT18   <---------O2   <---------YAB1     <-----------GT1
 
atcattggatgaacaagaggacctaaacgtaaaaagcccactccattcgttgccacttggcttctcagtattatgggccgccaagattaaactattccat  3393600
                                                     <---------ZAT14
                                              ------>MYB46(1)
                                              ------>MYB83
                                            <---------MYB59
                                           ----------------->AGL1
                                         <-----------GT1                       <---------YAB1  <----
                                      <---------ICU4 --------->ZAT14         <---------ICU4 <-------
                                <---------At5g28300  <-------TEIL --------->ANAC46  ----------->GT1
        <---------YAB1         <-----------GT1--------->MYB52(1)  --------->ANAC55(1)  <-------TEIL
      <-----------GT1     <---------AHL20(2)<---------MYB46(2)    --------->YAB1--------->ATHB12<---
 
gttttggtattacaatttgaaagttttattttttttactgcttattaccaaaccggttcacagtttcacacataatatcaacatgactggttcatacacc  3393700
                                                                                 ---------->DOF2
                                                                            ----------->GT1
                                                                           <---------HSFB2a(2)
                                                                       <-------GAMYB
                                                                       <---------ANAC58
                    ------->GAMYB                                      <---------ANAC58
                  --------->ZAT14                                     <------MYB83
                --------->ANAC46                                      <---------MYB46(3)
              --------->ZAT6                                          <------MYB46(1)
      <------ZmHOX2a(2)                                            <---------ANAC58
     <---------ARR11(3)                      ------>ZmHOX2a(2)     <---------ANAC46
    <------ZmHOX2a(1)                <---------ALFIN1              <---------AtLEC2
-----DAG2--------->ANAC55(2)       --------->ANAC58                <---------ANAC58       <------ZmHOX2a(1)
--ALFIN1 <---------ANAC55(2)       <---------ALFIN1          ------->TEIL  <---------ANAC46
-------DOF2   --------->ANAC46     --------->ANAC58     <------------CBF <---------MYB46(3)
 
ttttacaggatcacttaacacaacacacacacacacacacacacttgatcccagacttgaattgaatcttgcttggttgtggaaaaaagcccaggactag  3393800
                                         <------NtERF2
                                         ------------>CBF
                                     <---------MYB46(3)
                                     <------MYB83
                                     --------->MYB52(2)
                                     <------MYB46(1)
                                    <---------DEAR3(1)
                                    <---------MYB46(3)
                                    --------->MYB111(1)
                                    --------->MYB46(2)
                                    --------->MYB111(2)
                                    <---------AtMYB61
                                    --------->MYB55(2)
                                   <---------MYB55(1)
                                  <---------ANAC58
                                  <---------ANAC58
                                 <------MYB46(1)
                                 <------MYB83
                                 --------->MYB55(2)
                                 <---------MYB46(3)
                                 --------->ATHB12
                               <---------WOX13(1)
                              --------->ARR14(2)                                     <---------YAB1
                              <---------ARR14(2)                            <---------YAB1  <-------
                     <---------YAB1<--------P----------->TBP               <------------CBF --------
               ---------->ID1 <---------GLK1(2)---------->DOF2           <---------YAB1     <-------
      <---------GLK1(2)       <------------CBF--------->YAB1            <---------GLK1(2) <---------ARR11(3)
 
cccaaaccagattattttgttgttatgaaaccagattggttggtggcaataaaagcccaggcctagcccaaaccagattattgttgttatgaatacctta  3393900
                                                                            <------NtERF2
                                                 --------->YAB1            --------->LBD16
                                 <----------DOF2<---------YAB1            --------->LBD16
                      <---------ARR11(3)     <---------YAB1               --------->ETT(1)
     <----------DOF2  --------->ARR11(3)    <-------GAMYB            <---------ANAC58
 <----------DOF2      <-----------ARR10    <---------MYB46(3)        <---------ANAC58              <
--MYB59            --------->ANAC55(2)     ----------->GT1      <------------CBF            <------NtERF2
->TOE2(3)          <---------ANAC55(2)    <--------P         ------------>CBF        <------------CBF
--DAG2   <----------DOF2  <-----------GT1<-------GAMYB <----------DOF2   <---------LBD16   <--------
 
ccttctttctttcttttttgtcaagtatcttaccttctttctagggttgttattataactttgagtcaattgccttgccggaaaacaaaattggcgctgt  3394000
                             ----------->GT1
                         --------->ANAC58
                      <---------STY1(2)
                    <---------HSFB2a(2)
             ----------------->AGL2                                                          <------
        <---------AtLEC2 --------->ANAC58                                                --------->AHL20(2)
  --------->DEAR3(1)--------->HSFB2a(2)     <---------ANAC46                      <-------GAMYB <---
<---------At5g28300 >>>>>>>ZML2        <-----------RAV1(1)                        <---------At4g35610
-----------GT1   --------->AGP1 <---------AHL20(2)              <---------At4g35610      <---------AHL20(2)
-At4g35610   ----------------->AGL1 <---------AHL20(2)      <----------CDC5      <---------MYB46(3)
 
tttcaccgtctccatggccagttctagcaaggaagttaatttatgtggtttgttttcagtggctctgagctactatctacttggctgttgattttatttc  3394100
                                                   --------->ATHB12
                                                  --------->ICU4
                                        <---------HSFB2a(2)                              <---------TOE1(1)
                                        --------->HSFB2a(2)                              <---------TOE2(1)
                                       <---------LBD16                      --------->ANAC58       =
                                     <---------ARR14(2)                     --------->ANAC58 =======
                          <---------TOE2(3)       <---------YAB1     <---------MYB52(1) <-----------
                          <---------TOE1(3)  <---------At4g35610------>MYB83--------->ANAC46 <------ZmHOX2a(1)
                          --------->MYB59--------->LBD16        ------>MYB46(1)        =============
 <----------DOF2      <----------DOF2--------->ARR14(2)         --------->MYB52(1)     <------ZmHOX2a(1)
-----GT1     ------>ZmHOX2a(2)      <---------GLK1(1)         <---------MYB59         <----------ID1
-------DOF2 <---------At4g35610     --------->GLK1(1)         --------->AtMYB61  --------->YAB1    -
 
ttttcttttccattgatctgctcttcttttaggtaagagaaatccggaagatgatgatttggagaccaaaccgtttctcaagaaacataaggacgaggag  3394200
                   <---------ALFIN1
                  --------->ZAT14
                --------->ANAC58
             <------ZmHOX2a(2)
          <---------DEAR3(2)
       <-----------HVH21
      <---------TGA1a
      --------->O2<---------ZAT14
      --------->TGA1a
      <---------O2<---------ZAT18
      ===========================bZIP_DOF                                                          <
    --------->MYB52(1)<---------DAG2                                                          <-----
  <---------MYB52(2)  <----------DOF2                                                  --------->LBD16
================bZIP_DOF                    <---------ALFIN1                         <---------LBD16
====================HOX2a_HOX2a--------->AHL20(2)                                   --------->MYB52(1)
----------WRI1  --------->ANAC58         --------->ANAC46    ------->TEIL      <------ZmHOX2a(1)  <-
====================HOX2a_HOX2a<---------AHL20(2)        ------->TEIL       <------ZmHOX2a(1) <-----
--------->DOF2  --------->ANAC46        <-------TEIL ------->TEIL        <-----------RAV1(2)<------ZmHOX2a(1)
 
aagaaagtaacgtcggatcactccactttttttttttaatacatacaccacttatgtatgtatgtatgtgaatgtaacaggaggagacaccggaaggact  3394300
                                   <-----------GT1
                                  <---------AHL20(2)                <---------AHL20(2)
---------YAB1                    --------->AHL20(2)           --------->ICU4
----ANAC58                --------->ANAC58                 <---------YAB1           <-----------GT1
--------ANAC46            --------->ANAC58               ----------->GT1  <---------YAB1
----ANAC58----------->RAV1(1)    <---------AHL20(2)  <---------YAB1 --------->AHL20(2)  --------->ARR11(3)
 
tgctgatagcctccagcacaagtctgatcaagctaatttaatctctctcaaggtttaatattgtaataagttttattatgttcaaattaagcatcttgtt  3394400
                                                             --------->bZIP60(1)
                                                             <---------bZIP60(1)
                                                        <---------ANAC58              <---------At4g35610
              --------->MYB46(3)       ---------->DOF2  --------->ANAC55(2)         <--------P   ---
            --------->MYB52(1)        <------ZmHOX2a(1) <---------ANAC58         <---------TOE2(3)
   --------->GLK1(2)               <------ZmHOX2a(1)    <---------ANAC55(2)      <---------TOE1(3)
   <---------ARR14(2)            --------->ALFIN1      <-----------------------TaNAC69(2)  ---------
   <---------ARR11(3)           <------ZmHOX2a(1)     <------ZmHOX2a(1) <---------GLK1(2)-------->P
   --------->ARR14(2)    <----------DOF2      <---------ANAC46        --------->LBD16 --------->At4g35610
 
ctccaaaatctgttccaacggctactcgcttaacaggaggaggaaagtactgtggaaggacgtgatgacactcccgattttgttgaggtagctacctctc  3394500
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AGI:  At3g10845.1   
Description:  RNA recognition motif (RRM)-containing protein. similar to polyadenylate-binding protein, putative / PABP, putative [Arabidopsis thaliana] (TAIR:AT1G45100.1); similar to zinc finger protein [Entamoeba histolytica HM-1:IMSS] (GB:XP_649839.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677)
Range:  from: 3394014    to: 3397531    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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