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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
ICU4
<------
NtERF2
<------
NtERF2
------>
NtERF2
<---------
RAP2.6(3)
<---------
ATERF1(2)
--------->
RAP2.6(2)
--------->
RAP2.3(2)
--------->
RAP2.3(3)
--------->
ANAC58
--------->
DREB2C(2)
--------->
ANAC46
--------->
RRTF1(2)
--------->
ANAC58
--------->
DEAR3(1)
--------->
ANAC58
<---------
ANAC58
--------->
ATERF1(2)
<---------
ALFIN1
<---------
ANAC58
--------->
ANAC58
=================================
bZIP_DOF
--------->
RRTF1(3)
------->
ATHB12
---------->
DOF2
<---------
TGA1a
--------->
RAP2.3(1)
-------
YAB1
--------->
TOE2(3)
--------->
TGA1a
--------->
ATERF1(1)
----
ZmHOX2a(2)
--------->
ANAC46
<---------
MYB46(3)
<---------
RAP2.6(2)
----->
ARR11(3)
----------->
GT1
--------->
MYB52(2)
--------->
ERF1
------
ARR11(3)
<---------
MYB59
--------->
ZAT18
--------->
O2
<---------
ATERF1(1)
-->
DOF2
<------
ZmHOX2a(1)
<---------
ZAT18
<---------
O2
<---------
YAB1
<-----------
GT1
atcattggatgaacaagaggacctaaacgtaaaaagcccactccattcgttgccacttggcttctcagtattatgggccgccaagattaaactattccat
3393600
<---------
ZAT14
------>
MYB46(1)
------>
MYB83
<---------
MYB59
----------------->
AGL1
<-----------
GT1
<---------
YAB1
<----
<---------
ICU4
--------->
ZAT14
<---------
ICU4
<-------
<---------
At5g28300
<-------
TEIL
--------->
ANAC46
----------->
GT1
<---------
YAB1
<-----------
GT1
--------->
MYB52(1)
--------->
ANAC55(1)
<-------
TEIL
<-----------
GT1
<---------
AHL20(2)
<---------
MYB46(2)
--------->
YAB1
--------->
ATHB12
<---
gttttggtattacaatttgaaagttttattttttttactgcttattaccaaaccggttcacagtttcacacataatatcaacatgactggttcatacacc
3393700
---------->
DOF2
----------->
GT1
<---------
HSFB2a(2)
<-------
GAMYB
<---------
ANAC58
------->
GAMYB
<---------
ANAC58
--------->
ZAT14
<------
MYB83
--------->
ANAC46
<---------
MYB46(3)
--------->
ZAT6
<------
MYB46(1)
<------
ZmHOX2a(2)
<---------
ANAC58
<---------
ARR11(3)
------>
ZmHOX2a(2)
<---------
ANAC46
<------
ZmHOX2a(1)
<---------
ALFIN1
<---------
AtLEC2
-----
DAG2
--------->
ANAC55(2)
--------->
ANAC58
<---------
ANAC58
<------
ZmHOX2a(1)
--
ALFIN1
<---------
ANAC55(2)
<---------
ALFIN1
------->
TEIL
<---------
ANAC46
-------
DOF2
--------->
ANAC46
--------->
ANAC58
<------------
CBF
<---------
MYB46(3)
ttttacaggatcacttaacacaacacacacacacacacacacacttgatcccagacttgaattgaatcttgcttggttgtggaaaaaagcccaggactag
3393800
<------
NtERF2
------------>
CBF
<---------
MYB46(3)
<------
MYB83
--------->
MYB52(2)
<------
MYB46(1)
<---------
DEAR3(1)
<---------
MYB46(3)
--------->
MYB111(1)
--------->
MYB46(2)
--------->
MYB111(2)
<---------
AtMYB61
--------->
MYB55(2)
<---------
MYB55(1)
<---------
ANAC58
<---------
ANAC58
<------
MYB46(1)
<------
MYB83
--------->
MYB55(2)
<---------
MYB46(3)
--------->
ATHB12
<---------
WOX13(1)
--------->
ARR14(2)
<---------
YAB1
<---------
ARR14(2)
<---------
YAB1
<-------
<---------
YAB1
<--------
P
----------->
TBP
<------------
CBF
--------
---------->
ID1
<---------
GLK1(2)
---------->
DOF2
<---------
YAB1
<-------
<---------
GLK1(2)
<------------
CBF
--------->
YAB1
<---------
GLK1(2)
<---------
ARR11(3)
cccaaaccagattattttgttgttatgaaaccagattggttggtggcaataaaagcccaggcctagcccaaaccagattattgttgttatgaatacctta
3393900
<------
NtERF2
--------->
YAB1
--------->
LBD16
<----------
DOF2
<---------
YAB1
--------->
LBD16
<---------
ARR11(3)
<---------
YAB1
--------->
ETT(1)
<----------
DOF2
--------->
ARR11(3)
<-------
GAMYB
<---------
ANAC58
<----------
DOF2
<-----------
ARR10
<---------
MYB46(3)
<---------
ANAC58
<
--
MYB59
--------->
ANAC55(2)
----------->
GT1
<------------
CBF
<------
NtERF2
->
TOE2(3)
<---------
ANAC55(2)
<--------
P
------------>
CBF
<------------
CBF
--
DAG2
<----------
DOF2
<-----------
GT1
<-------
GAMYB
<----------
DOF2
<---------
LBD16
<--------
ccttctttctttcttttttgtcaagtatcttaccttctttctagggttgttattataactttgagtcaattgccttgccggaaaacaaaattggcgctgt
3394000
----------->
GT1
--------->
ANAC58
<---------
STY1(2)
<---------
HSFB2a(2)
----------------->
AGL2
<------
<---------
AtLEC2
--------->
ANAC58
--------->
AHL20(2)
--------->
DEAR3(1)
--------->
HSFB2a(2)
<---------
ANAC46
<-------
GAMYB
<---
<---------
At5g28300
>>>>>>>
ZML2
<-----------
RAV1(1)
<---------
At4g35610
-----------
GT1
--------->
AGP1
<---------
AHL20(2)
<---------
At4g35610
<---------
AHL20(2)
-
At4g35610
----------------->
AGL1
<---------
AHL20(2)
<----------
CDC5
<---------
MYB46(3)
tttcaccgtctcc
atggccagttctagcaaggaagttaatttatgtg
gtttgttttcagtggctctgagctactatctacttggctgttgattttatttc
3394100
--------->
ATHB12
--------->
ICU4
<---------
HSFB2a(2)
<---------
TOE1(1)
--------->
HSFB2a(2)
<---------
TOE2(1)
<---------
LBD16
--------->
ANAC58
=
<---------
ARR14(2)
--------->
ANAC58
=======
<---------
TOE2(3)
<---------
YAB1
<---------
MYB52(1)
<-----------
<---------
TOE1(3)
<---------
At4g35610
------>
MYB83
--------->
ANAC46
<------
ZmHOX2a(1)
--------->
MYB59
--------->
LBD16
------>
MYB46(1)
=============
<----------
DOF2
<----------
DOF2
--------->
ARR14(2)
--------->
MYB52(1)
<------
ZmHOX2a(1)
-----
GT1
------>
ZmHOX2a(2)
<---------
GLK1(1)
<---------
MYB59
<----------
ID1
-------
DOF2
<---------
At4g35610
--------->
GLK1(1)
--------->
AtMYB61
--------->
YAB1
-
ttttcttttccattgatctgctcttcttttag
gtaagagaaatccggaagatgatgatttggagaccaaaccgtttctcaagaaacataaggacgaggag
3394200
<---------
ALFIN1
--------->
ZAT14
--------->
ANAC58
<------
ZmHOX2a(2)
<---------
DEAR3(2)
<-----------
HVH21
<---------
TGA1a
--------->
O2
<---------
ZAT14
--------->
TGA1a
<---------
O2
<---------
ZAT18
===========================
bZIP_DOF
<
--------->
MYB52(1)
<---------
DAG2
<-----
<---------
MYB52(2)
<----------
DOF2
--------->
LBD16
================
bZIP_DOF
<---------
ALFIN1
<---------
LBD16
====================
HOX2a_HOX2a
--------->
AHL20(2)
--------->
MYB52(1)
----------
WRI1
--------->
ANAC58
--------->
ANAC46
------->
TEIL
<------
ZmHOX2a(1)
<-
====================
HOX2a_HOX2a
<---------
AHL20(2)
------->
TEIL
<------
ZmHOX2a(1)
<-----
--------->
DOF2
--------->
ANAC46
<-------
TEIL
------->
TEIL
<-----------
RAV1(2)
<------
ZmHOX2a(1)
aagaaa
gtaacgtcggatcactccactttttttttttaatacatacaccacttatgtatgtatgtatgtgaatgtaacag
gaggagacaccggaaggact
3394300
<-----------
GT1
<---------
AHL20(2)
<---------
AHL20(2)
---------
YAB1
--------->
AHL20(2)
--------->
ICU4
----
ANAC58
--------->
ANAC58
<---------
YAB1
<-----------
GT1
--------
ANAC46
--------->
ANAC58
----------->
GT1
<---------
YAB1
----
ANAC58
----------->
RAV1(1)
<---------
AHL20(2)
<---------
YAB1
--------->
AHL20(2)
--------->
ARR11(3)
tgctgatagcctccagcacaagtctgatcaagctaatttaatctctctcaag
gtttaatattgtaataagttttattatgttcaaattaagcatcttgtt
3394400
--------->
bZIP60(1)
<---------
bZIP60(1)
<---------
ANAC58
<---------
At4g35610
--------->
MYB46(3)
---------->
DOF2
--------->
ANAC55(2)
<--------
P
---
--------->
MYB52(1)
<------
ZmHOX2a(1)
<---------
ANAC58
<---------
TOE2(3)
--------->
GLK1(2)
<------
ZmHOX2a(1)
<---------
ANAC55(2)
<---------
TOE1(3)
<---------
ARR14(2)
--------->
ALFIN1
<-----------------------
TaNAC69(2)
---------
<---------
ARR11(3)
<------
ZmHOX2a(1)
<------
ZmHOX2a(1)
<---------
GLK1(2)
-------->
P
--------->
ARR14(2)
<----------
DOF2
<---------
ANAC46
--------->
LBD16
--------->
At4g35610
ctccaaaatctgttccaacggctactcgcttaacag
gaggaggaaagtactgtggaaggacgtgatgacactcccgattttgttgag
gtagctacctctc
3394500
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AGI:
At3g10845.1
Description:
RNA recognition motif (RRM)-containing protein. similar to polyadenylate-binding protein, putative / PABP, putative [Arabidopsis thaliana] (TAIR:AT1G45100.1); similar to zinc finger protein [Entamoeba histolytica HM-1:IMSS] (GB:XP_649839.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677)
Range:
from: 3394014
to: 3397531
Orientation: Forward
Links:
TAIR
MIPS
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publications
when using AthaMap.
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