Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                   ----------->RAV1(2)                                                                ------>MYB46(1)                                                                -------->P                                                              <---------MYB46(2)                                                              <---------MYB59                                                              <---------MYB111(1)                                                 --------------->AGL15                                    --------->ANAC55(2)   <---------ARR11(3)                                  --------->MYB52(1)  ---------->DOF2           --------->AHL20(2)                                  ------>MYB46(1)<---------------AGL15          <---------AHL20(2)                                  ------>MYB83--------->GLK1(2) ------>MYB83   --------->ICU4                                 --------->MYB55(1) --------->YAB1        ----------->GT1                                <---------MYB59 ----------------->AGL3 <---------MYB46(3)                              <---------ARR11(3)=====================================================                              --------->ARR11(3)<-----------------AGL3<---------AtMYB61             <                          ---------->DOF2    <---------ARR14(2) --------->MYB52(1)                --- -------->MYB46(3)   --------->ANAC58        <---------GLK1(2)<---------MYB111(2)                <--- ---------MYB52(2)   --------->ANAC46        --------->ARR14(2)--------->MYB55(1)       --------->GLK1(2) -------->RAV1(1)    --------->ANAC58  <---------ARR14(2) --------->ARR11(3) --------->YAB1    ------   caacaatcgaatgagttatagacacacaaaaagacctaacgtattcagattctataaaaagatacctacctggtggtagtaataaatgacattctatcaa  3203600                   <------MYB46(1)                   <------MYB83                  --------->MYB59                --------->ARR14(1)                --------->CCA1(2)      ------>ZmHOX2a(2)      ===========================HOX2a_HOX2a     ============================HOX2a_HOX2a     <------ZmHOX2a(2)    <---------ARR14(2)              <---------AHL20(2)    --------->ARR14(2)           --------->AHL20(1)    --------->ARR11(3)    <------ZmHOX2a(1)  --------->ICU4 ==================================================MADS_MADS -----------GT1--------->ARR11(3)<---------AHL20(1) ------>YAB1   --------->ARR11(1)<---------ARR11(3)                  <-----------HVH21     ---------- ------ATHB51  <---------ARR14(2)--------->AHL20(2)       --------->HSFB2a(2)          ---------->DOF2 --->WOX13(1)----------->ARR10   <-----------------AGL3   <---------HSFB2a(2)       --------->AtLEC2   ttatacgatctggataagatttggtataggagctatatattaatggaattactaagttttctgaaactacatgtcagaaccatttcatgcaaagaaagtt  3203700                                                                                                -----                                                                                               <-----                                                                                              ------>MYB83                                                                                              ------>MYB46(1)                                                                                            ---------                                                                                    --------->ANAC46           ---------->DOF2         --------->AHL20(2)   ----------->GT1             --------->ANAC58  <----------ID1                   <---------AHL20(2)   --------->TOE2(3)           --------->ANAC58  <---------YAB1                  --------->AHL20(2)   ----------->GT1            <---------ALFIN1  <---------ANAC55(2) <---------YAB1       ----------->GT1          <---------GLK1(1)       <-------- >DOF2--------->AHL20(2)    <---------TOE2(3)      --------->AHL20(2)            ------>ZmHOX2a(1) <-   gattacgaaaaaataaagttttatatgattaagaaaattaatactttgtaaaaaaaaatgttaaatatggatttgtggtcttcctcacaccagaccaaac  3203800                                                                             ----------->GT1                                                                            --------->ALFIN1                                                                           ------->PIF5                                                                           <-------MYC4                                                                           <-------PIF5                                                                           ------->MYC4                                                                           <-------MYC3                                                                           <-------MYC2                                                                           ------->MYC3                                                                           ------->MYC2                                   --------->ZAT2                         <---------TGA1a                                   <---------ZAT2                         --------->TGA1a                       <---------ANAC55(2)                                --------->ANAC55(2)                       --------->ANAC55(2)                                --------->O2 ---->YAB1             ----------->RAV1(2)     =====================================bZIP_DOF ----ATHB12           --------->MYB52(1)       ---------->DOF2            <---------O2 >AtMYB61            --------->RVE1(1)     --------->ANAC58              ------------>OsbHLH66 -MYB59<---------CCA1(2) ----------->HVH21 ----------->GT1            ----------------->PIF3(1) --------ICU4        <-----------GT1       --------->ANAC58   <-------TEIL<---------ANAC55(2)   atcatgtccctatctctggcaaaatacctgacgctcgagctcgacaagtaaaagaagactcatatacatggaagacacgtggtgactatattgtccgtcc  3203900                   <-------GAMYB                  <---------MYB46(3)                --------->MYB52(2) <---------ANAC58               --------->MYB52(1)     ------->GAMYB <---------MYB46(3) <---------RAP2.6(2)              ----------->HVH21      <---------MYB46(2)            <----------DOF2            <---------At4g35610      <---------MYB52(2)        ------>MYB46(1)                     <-            ----------->RAV1(2)      --------->MYB46(3)        -------->P                       <----            --------->At4g35610     <---------At4g35610        ------>MYB83                    <-----        <-----------GT1<---------ANAC46            <---------TOE1(2)   <---------ANAC46  --------->TOE1(2)       --------->YAB1<---------MYB46(3)    --------->ANAC46  --------->MYB46(3)    <---------AHL20(2)      <---------MYB52(2)<---------ZAT18 -------->P<---------MYB52(1)   <---------ANAC58  --------->TOE2(2)   atattgcaattaacatctgacggttgtggacacatttcaactaacccgactcgttcgttctcaccaactctttgcgtctgtctatttaaaacctccgatg  3204000                                     <-----------GT1                                 <---------AHL20(1)                                 --------->AHL20(2)                      <---------AHL20(2)                     <---------AHL20(2)                     <---------AHL20(1)                     --------------->AGL15      <----------DOF2--------->AHL20(1)                     <---------DAG2     <---------DAG2  --------->AHL20(2)                <----------DOF2 --------At4g35610*TSS--------->AHL20(2) <----------DOF2    <----------DOF2 -------HVH21<---------LBD16    --------->AHL20(2)<-----------GT1   <---------YAB1 ------RAV1(1)  <------ZmHOX2a(1)<---------AHL20(2)---------->ID1 --------->YAB1             --------   tcgctcacctttctctcaggaaatttatttgctattaaatttcctttttatttctccctttactttttttataatcgcaaaaacaaatttcaatagttct  3204100         ------->MYC3         <-------MYC3                                         <---------ICU4        <---------ANAC46                                 <-----------GT1        --------->O2                             <---------ANAC46   --------->ANAC46         --------->ANAC46     ----------->GT1             ---------->DOF2 ->ARR11(3)              <-------TEIL  <---------ZAT6 --------->YAB1    ----------->GT1           <--   tgtaagcgcaacgtgtaagtagagacatacacacatttgtagtgttttgttttgtataataacatcatcgcatatagagaaaagaagttaagacgaccgt  3204200                                                          --------->ANAC58                                                          --------->ANAC58                                                          <------NtERF2                                                         <---------ZAT18                         ----                                                        <---------ANAC46                         <---                                                        --------->DEAR3(1)                      -----                                                       <------NtERF2                            -----                                                      <---------DEAR3(2)                        -----                                                      <---------ORA47(2)                       ------                                                      <---------RAP2.3(1)                      ------                                                      <---------DEAR4(2)                      -------                                                      <---------ATERF1(1)                     ------>NtERF2                                                     <---------DREB2C(2)               --------->bZIP60(1)                      ----------->GT1                <---------RAP2.3(3)               <---------bZIP60(1)                     ----------->GT1                 <---------RAP2.3(2)               --------->ANAC46                    <---------ANAC46                 <---------DEAR3(1)              --------->YAB1                    --------->ETT(1)            ------->GAMYB                     --------->WOX13(1)                  <-----------HVH21       <----------DOF2------>NtERF2      --------->YAB1   --------              <---------LBD16        <---------MYB52(1)--------->ATERF1(1) <---------ATHB12  -------- -------CCA1(2) --------->LBD16  --------->MYB52(1)<-----------HVH21     --------->WOX13(1) ---------   atatatcgttttgaaaaccgggtcggataaaaaaaaaccggtttctttaaccgagtcggcgcgcatggagctatgcaatcaaaacaatcacatcaccgcc  3204300                                      <----------DOF2        <------ZmHOX2a(2)           --------->HSFC1(2)       --------->ARR14(2)           <---------HSFC1(2)       <---------ARR14(2)        <------NtERF2      <---------GLK1(1)      ------>NtERF2 <---------LBD16            --------->MYB46(3)       --------->O2 -->NtERF2                  <---------DEAR3(1)       --------->ZAT2 --------HVH21              --------->DEAR3(1)       ----------->RAV1(2) ---->DEAR3(1)             --------->ATERF1(1)       <---------ZAT2 ---->RAP2.3(3)            --------->RAP2.6(3)       <---------O2                                  <- ---->RAP2.3(2)           --------->MYB52(1)        ------>NtERF2                                  -- --->RAP2.3(1)           ----------->HVH21         <---------ALFIN1                              <--- --->DEAR4(2)          --------->ANAC58           --------->ATERF1(1)                            <--- -->ABI4(1)            --------->ANAC58   ---------->DOF2     --------->At4g35610                ---- ->ANAC46------>ZmHOX2a(2)<---------ATERF1(1)    <---------ATERF1(1)      ----------->GT1 ---------->DOF2 ->DEAR3(1)  --------->WRKY12<---------SPL7     --------->PCF2----------->GT1            <------ZmHOX2a(1) >MYB46(3)  <---------MYB52(1) <---------------------WRI1     <---------ANAC46---------->DOF2   <----   gtctcgggcgatccgttgaactggaacgcgacggccgaagctttgaaagggagccacctggatgaggtgaaacgaatggtgaaagagtataggaaagagg  3204400                                           --------->TGA1a                                           <---------O2                                           --------->DEAR3(1)                                           --------->O2                                           <---------TGA1a                                           <---------ANAC46                                          <------NtERF2           ------>ZmHOX2a(2)                                          --------->ATERF1(1)     ===========================HOX2a_HOX2a                                        --------->RAP2.6(2)      <------ZmHOX2a(2)                                        --------->RAP2.3(2)      ============================HOX2a_HOX2a                                        --------->ANAC46         <---------GLK1(1)                                       --------->ERF1           --------->GLK1(2)                  <-                                       --------->DEAR3(2)       --------->ARR11(3)                ---                                       --------->RAP2.3(1)      <---------ARR14(2)           <-------PIF5                                       --------->ATERF1(1)      <-----------ARR10            ------->MYC2                                       --------->MYB46(3)       <---------ARR11(3)           ------->PIF5                               --------->WRKY18(1)              --------->ARR14(2)           <-------MYC3                               <<<<<<<<<<WRKY43          ================HOX2a_HOX2a         <-------MYC2                               <<<<<<<<<<WRKY26        --------->ALFIN1                      ------->MYC3                               <<<<<<<<<<WRKY38       ==================HOX2a_HOX2a         <--------                              <-----------HVH21       ===================HOX2a_HOX2a        <--------         <------ZmHOX2a(1)   <------MYB46(1)--------->LBD16 =============HOX2a_HOX2a  <------ZmHOX2a(1) -----NtERF2             --------->ATHB12<---------RAP2.6(3)<------ZmHOX2a(1)  --------->MYB52(1)<--- ------->At5g28300      <---------YAB1<---------ATERF1(1)===============HOX2a_HOX2a   --------->ATERF1(1) ------DEAR3(1)        <---------TOE2(3)--------->DEAR3(1)--------->ALFIN1  <---------At4g35610 <---- ------ANAC46      ==================================bZIP_DOF  <------ZmHOX2a(1)    --------->ALFIN1 ----->ALFIN1      <----------DOF2    --------->At4g35610<------ZmHOX2a(1)  --------->ZAT2 <-------TEIL -----ABI4(1)--------->ALFIN1<------MYB83------>NtERF2<------ZmHOX2a(1) --------->ALFIN1   ----------   cggtgaagttaggaggtgagactttgacgattggtcaagtagccgccgtggctagaggaggaggaggatctacggtggagctagcggaggaggctcgtgc  3204500  Previous    Next  AGI:  At3g10340.1    Description:  phenylalanine ammonia-lyase, putative. Identical to Phenylalanine ammonia-lyase 4 (PAL4) [Arabidopsis Thaliana] (GB:Q9SS45;GB:Q53ZM8); similar to PAL2 (phenylalanine ammonia-lyase 2), phenylalanine ammonia-lyase [Arabidopsis thaliana] (TAIR:AT3G53260.1); similar to PAL3 (PHENYL ALANINE AMMONIA-LYASE 3), phenylalanine ammonia-lyase [Arabidopsis thaliana] (TAIR:AT5G04230.1); similar to PAL1 (PHE AMMONIA LYASE 1), phenylalanine ammonia-lyase [Arabidopsis thaliana] (TAIR:AT2G37040.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62101.1); similar to phenylalanine ammonia lyase [Populus balsamifera subsp. trichocarpa x Populus delto Range:  from: 3204018    to: 3208027    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version