Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                       <---------GLK1(2)                   <---------YAB1     --------->AHL20(2)     <---------AHL20(2)    <---------AHL20(2)    --------->AHL20(2)                                      --------->LBD16    --------->AHL20(1)                                      ------>ZmHOX2a(1)    <---------AHL20(1)                                 <----------DOF2 ------->GT1    <---------ARR11(3)--------->YAB1    --------->ARR11(3) ---->DAG2      --------->GLK1(2)<---------ATHB12   <---------ARR11(3) ---->DOF2----------->GT1        <---------YAB1------>ZmHOX2a(1)   ----------------->AGL1           <   agtgaatttatttggaaaaatctgattctcaaacaatgatacaaaactccttaagacctttcctggtttcccaatgctggaatacatcgatagcattgag  2763900                                                                                                  ---                                                                                                  ---                                                              --------->TGA1a                ------>MYB46(1)                                                              --------->O2                   ------>MYB83                                                              <---------O2                 <---------MYB59              <----------DOF2                                 =======================================          --------->REM1(1)                                <---------ZAT18                 <---------MYB46(2)       <---------MYB52(1)                                  --------->ZAT18             --------->DOF5.7(2)      <-------GAMYB                                      <---------ZAT18               <---------MYB52(1)      <-----------HVH21                                  --------->ZAT14             <---------ANAC58   ------>NtERF2                   <---------ANAC58      <---------ZAT14             <---------ANAC46  --------->ANAC58                 <---------ANAC58      --------->ZAT18             <---------ANAC58  --------->ANAC46   --------->ANAC58          --------->ANAC58        <---------AHL20(2) <---------ANAC55(2)  --------->ANAC58   --------->ANAC46          --------->ANAC58        --------->AHL20(2) --------->ANAC55(2) ---------ALFIN1     --------->ANAC58     --------->At4g35610 <---------TGA1a<<<<<<<<<<<<<<<<<LFY<---   ttccacgccgttacatctttttcaaggaagtcgaattgcttctcagcataagaaacttgtgcacacttggcatataaatccacaatggcgttacctaatc  2764000       ------->TEIL                      <---------At4g35610 ----->P                                 <---------ZAT2 ---->TEIL                               --------->At4g35610 ======MYC_MYB                --------->HSFB2a(2)                       <----------DOF2       <------ --------GT1               <----------DOF2 <----------DOF2      <---------ZAT6      <---------ANAC46   taccttctgaatctattccaagtatcaagcttttggaatggacagctttgccaattctcaaggctagtgcaagtctttgaggcatttcgtcgaacacttt  2764100                                                     <---------At4g35610                                                    --------->ARR14(2)                                                    ------->TEIL                                       <------ZmHOX2a(1)                                           --                                    --------->HSFC1(1)          <---------ANAC58            ------>NtERF2                                    <---------HSFC1(1)          <---------ANAC58           --------->DEAR3(1)                                    <---------HSFB2a(2)    <---------ICU4                  --------->MYB46(3)                                    --------->HSFB2a(2)   <---------YAB1               <-------TEIL<-                <---------AtLEC2--------->GLK1(1)   <---------ARR14(2)                --------->ARR14(1)          --------->ATHB51--------->MYB52(1)       <---------CCA1(2)                 --------->ARR11(1) ----DOF2 <---------AHL20(2)   <---------GLK1(2)<XXXXXXXXXXXXXXXXXXXXMIR842          <---------GLK1(2)   gcgactcttgaataatttgcattgccccaaacagatttctaggagacgttgatgtatctgatcatggctgggcaaaacatgtccatagattcgacgaccc  2764200                                                             <------NtERF2                                                            <-----------HVH21                                                            ------>NtERF2                                                           <---------ANAC46                                                          --------->RAP2.3(1)                                                         <---------RAP2.3(1)                                                         <---------ATERF1(1)                 --------                                                        <---------DEAR3(1)           <---------WOX13(1)    --------->LBD16                                    --------->SPL7              --------->ATHB12   --------->LBD16                                     <---------ORA47(1)         <---------YAB1  ---   <---------LBD16        ---------->DOF2              --------->RAP2.6(3)      --------->ANAC55(2) -  <---------LBD16       <-------TEIL                 ----------->HVH21          <---------ANAC55(2)<- <---------LBD16      <---------SPL7               <------NtERF2               <-------TEIL  -------- ------->ARR14(2)    <---------ANAC46       <---------ICU4<------NtERF2     --------->GLK1(1)<------- --------ARR14(2)   <-----------------------TaNAC69(2)<------ZmHOX2a(1)<---------LBD16       <-------   aaatccggggaataactcaaacgacgtacaaaggagaaagaatcaaacatggccgaggacggcgtcaagagaactcggaaatacatgattgagactgcag  2764300                            <<<<<<<ZML2                       <---------ZAT2                       --------->ZAT2      ---------->DOF2<------NtERF2 ->ZAT14            --------->LBD16 ------>SPL7 --------->HSFC1(2) ---------->RAV1(1)--------->ETT(1)                                              --------->MYB52(1) --------ETT(1)   <---------LBD16                                              <---------MYB52(2) ->ZAT18     <---------HSFC1(2)                                              --------->MYB52(1)    -- --ZAT18     --------->HSFB2a(1)              ------>ZmHOX2a(1)     --------->DAG2         <------NtERF2 --ZAT14     <---------HSFB2a(1)      ------------>CBF             ---------->DOF2       <---------DEAR3(1)   tccgacaaaaaaggaaccttgccggagctagaacagaggtctcaattcctctataaaccatgagaaacaaaaagcatccaaacgaacagggtcgtcgtga  2764400                                                                                                -----                                                                                                <----                                                                                                -----                                                                                               <-----                                                                                              <------                                                                                              <------                                                                                           <------NtERF2                                                                                          ------>NtERF2                                                                                          --------->LBD16                                                                                          --------->MYB52(1)                                           ----------->GT1                          ---------->DOF2                                         --------->At4g35610                     --------->ANAC58                                         <---------LBD16                     <---------WRKY18(1)-----                                         <---------At4g35610                ----------->HVH21<-------                                   <---------DAG2                           --------->WRKY38(1)<-----                                   <----------DOF2                          --------->WRKY12 <-------                                <-----------GT1                        <---------ANAC46  --------->ANAC46                          --------->AHL20(1)                       <----------DOF2--------->LBD16  --             --------->GLK1(2)--------->YAB1                    ------->TEIL--------->WRKY45<--------            --------->DAG2--------->AHL20(2)                    -------->P <--------P   --------->MYB46(3)           ---------->DOF2<---------AHL20(2)    --------->AHL20(2)<---------DAG2 <---------ANAC55(2) -------->DOF2           --------->AHL20(2)--------->LBD16     <-----------GT1   --------->ANAC58<---   gtaaagaaattcgaaaagctgtttcaaaaaaattatactttttagcggaaaaaaatgagaagaatcaaccttttcgggttgacccgtaaacccgccggtt  2764500   <---------LBD16 ---->MYB52(2) -----MYB46(3) ---->MYB111(2) ----MYB55(1) -GAMYB ---MYB52(1) ---->MYB55(2)           <---------ANAC46                    <---------ICU4 --DEAR3(2)              <---------ZAT6                     --------->ICU4 ---P                    ----------->GT1                  <---------ANAC55(2) --MYB46(3)            <---------ANAC46                   --------->ANAC55(2) ------->WRKY38(1) <---------TOE1(2)                      --------->ANAC46               <---------ANAC46 -DEAR3(1)         <---------TOE2(2)                      --------->ANAC55(1)      --------->ICU4 ----GAMYB  <------ZmHOX2a(1)                      <-----------GT1     <-------TEIL<---------ATHB51   gttgactcggattaggactcgtatgtagtgtgaattagaggttctctggtcatttacaacacataattagaggttcgatgaagaaattattctgtgtaag  2764600                                                        *TSS       --------->ALFIN1                                                      ---------->DOF2                         <------                      ---------->DOF2             --------->AHL20(2)                       --------->ICU4     --------->AHL20(2)                           <---------AHL20(2)                 <---------TOE2(3)     <---------AHL20(2)  --------->At4g35610 ------------>CBF <---------AHL20(2) <----------DOF2   tgtgaatttaaatatagcaaacctataagctcaaaactttgaatatggccaatttataaagaaatttatgtgtggaagtatgactttaatgtaattaaga  2764700                   <---------ICU4                   --------->YAB1                  --------->ICU4                 <---------AHL20(2)                  <----------DOF2                           ------                --------->YAB1                       --------->TOE2(3)                         <-----               <---------YAB1                    --------->ARR14(2)                <---------ANAC58          --------->GLK1(2)                      <---------ARR14(2)                <---------ANAC55(2)         --------->WOX13(1)                 --------->AtLEC2                       <---------ANAC46 ---TOE2(3)<---------ATHB12            <----------DOF2                             <---------ANAC58   aatattagagccaatctataataatgtctcaaatatagggtcttttatgcaaatactttaaaactcaaaactggttttggataatgcgtaaactaaatta  2764800  Previous    Next  AGI:  At3g09040.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G13650.1); similar to hypothetical protein OsJ_014817 [Oryza sativa (japonica cultivar-group)] (GB:EAZ31334.1); similar to hypothetical protein OsI_016072 [Oryza sativa (indica cultivar-group)] (GB:EAY94839.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO60884.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 2761200    to: 2764286    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g09050.1    Description:  similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96465.1) Range:  from: 2764656    to: 2766149    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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