Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                       <---------YAB1                                   <---------AHL20(2)                                   --------->AHL20(2)                                  <---------AHL20(2)                               --------->AHL20(2)                               --------->ATHB51    <---------GLK1(2)         --------->ICU4          <<<<<<<<<TBF1  <---------AHL20(2)          <---------YAB1<----------DOF2 ------>GT1                 --------->YAB1  <---------DAG2 --MYB83  <----------DOF2   <---------ICU4 <---------ANAC58                  <---------YAB1 --MYB46(1)                <---------ATHB12<---------ANAC58 <<<<<<<<<TBF1<---------MYB52(1) ---WOX13(1)               --------->ICU4<-----------GT1 <<<<<<<<<TBF1 ----------->GT1        -------   gttttaaattctctttctctcattctcaaatcattatttatttttgcttttccttcttcttcttcttcataaaccgtttattttagttctctatgtctga  2640700                       <---------HSFB2a(2)                       --------->HSFB2a(2)                      <---------LBD16                    --------->ARR14(2)                    <---------ARR11(3)                    <---------ARR14(2)                    --------->ARR11(3)                                                  --------->ALFIN1                --------->YAB1                                                         --------->ZAT18               <---------ATHB12                                                   <---------YAB1      --------->AHL20(1)                                   <---------MYB46(3)<---------MYB46(3)      <---------AHL20(1)                               --------->ATHB12      ----------->GT1      <---------AHL20(2)             <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <------MYB46(1)      --------->AHL20(2)          <---------ZAT6      <---------YAB1         <------MYB83 ---->HVH21  --------->WOX13(1) <---------ANAC46    --------------->AGL15  <---------WOX13(1)   ctgcataatttattccaatcaatatctggaattgtagtgtaattgaaaccctcaccatgaatggttgtagttcttagattggttataagtgtgcgactag  2640800                                                                      --------->MYB52(1)                                                                  --------->GLK1(2)                                                                  <---------ARR11(3)                                     <---------AHL20(2)           --------->ARR11(3)                           ----------->GT1                <---------MYB46(3)              <---------AHL20(2)                       --------->ATHB12  --------->YAB1<---------ANAC46                   --------->AHL20(2)            <-----------RAV1(1)     --------->AHL20(2) <---------ANAC58          <---------ZAT6            <---------MYB46(3) --------->AHL20(2)  <----------DOF2<-----------ARR10       --------->YAB1       <---------YAB1 <---------YAB1<---------AHL20(2) <---------ANAC58        ----------->GT1   ttttgaattttcatttgttgttgtatgattcgtttaaattaaatcacaagagtctttgggtgtttgaaaatctaactgaaatagtgatacaattatatgt  2640900                                                    --------->ATHB12                                                    -------->ATHB1                                                    <---------ICU4                                                   <---------YAB1                                               <---------AHL20(2)                                ----                                            --------->YAB1                               ----------->GT1                                          --------->AHL20(2)                           <---------WOX13(1)                                         --------->YAB1                             ------>ZmHOX2a(1)                ----------->GT1         --------->AHL20(2)                          <---------YAB1              ---------->DOF2        --------->AHL20(2)                            <---------MYB59    <-----------GT1                 <---------AHL20(2)                            ----------------->AGL1   <-----------GT1                  --------->AHL20(2)                <-----------GT1 <------------CBF  <---------AHL20(2)          ----------->GT1  --------->AHL20(2) <---------AHL20(2)--------->ICU4   gaaatttatcgtctcaaaaagataaactacatgagtaaataaataaaaataaaatcattgctctgtattttttgactgcatgagtcctaattggtgaaat  2641000                            <---------AHL20(1)                  <---------YAB1                            --------->ARR11(3)                 <---------ANAC46                            --------->AHL20(1)                *TSS                           <-----------TBP                 <---------ANAC58                <---------ANAC46                           --------->AHL20(2)              <---------ANAC58                <---------ANAC58                        <---------ICU4                    --------->MYB52(2)       <---------HSFB2a(2)                        <---------AHL20(2)              --------->At5g28300        --------->HSFB2a(2)                       --------->AHL20(2)        --------->ALFIN1             --------->HSFB2a(1)             --------->ANAC58        --------->DAG2     <------NtERF2         <---------HSFC1(2)             --------->ANAC58      ---------->DOF2    --------------->AtSPL3  --------->HSFC1(2)     <----------DOF2--------->AHL20(2)          <-----------HVH21             <---------HSFB2a(1) ----->AHL20(2)     <---------AHL20(2)----------->GT1 <---------DEAR3(1) --------->YAB1    <---------ANAC58   aaaaaaacttttggcacgagaattaataaatatatagaaaaggtgaaataggtgaggcggtacttgctgatagaatcagaagcttcgagactgacttgtt  2641100                                                              <---------YAB1                                                             --------->AHL20(2)                                      <---------ANAC58--------->ANAC46                                      <---------ANAC46--------->ANAC58                          -----                          ----------->GT1          --------->ZAT14                             ------              ---------->DOF2<-----------GT1       <---------ZAT18                   --------->LBD16  --------->GLK1(2)     ---------->DOF2         <----------DOF2    <-----------GT1  --------------->AGL15 <---------GLK1(2)---------->DOF2     <---------ANAC58--------->ANAC58 <---------GLK1(2) ---------->DOF2   ttagattctctgactataaagaaaggcaaagtaacaagtttcgttttctcctttgcactccatttttattctcgattctcttctctcccgataaagaagc  2641200                                                                                          <----------             --------------->AtSPL8                                              --------->HSFB2a(1)             --------------->AtSPL3                                             <---------ARR14(2)       <-----------RAV1(1)--------->LBD16                  --------->TOE2(3)    --------->ARR14(2)   --------------------->WRI1                              --------->TOE1(3)   <---------GLK1(2)   <----------DOF2       <---------HSFB2a(2)       <---------MYB46(3)        --------->LBD16 ---->ARR11(3)           --------->HSFB2a(2)       ----------->GT1          --------->HSFB2a(2) --->At4g35610     ------>ZmHOX2a(1)            <----------DOF2     <----------DOF2    ------>ZmHOX2a(1)   tctcgctttgtgttgtccgtccttcttccaggtctaattccaccatttctctttggttaaaccctaatttctttctctcccgaatcgtcctctgtttttg  2641300                                               <---------ANAC58               <---------ALFIN1                <---------ANAC58   --------->LBD16                <---------ARR14(2)  <---------ANAC58               <---------GLK1(1)    <-----------RAV1(1)  <---------ANAC58               --------->GLK1(1)  <---------ANAC46        --------->ARR14(2)<------  <---------ANAC46        --------->YAB1       --------->ANAC55(2) <------MYB46(1)         ------>ZmHOX2a(2) <---------LBD16          -------->HAHB4      <---------TOE2(3)    <------MYB83 >>>>>>>>>>>>>>>>>LFY --------------ANAC81    <---------YAB1 <------ZmHOX2a(2)         --------->MYB59         <---------At4g35610   ttttgcgcgattagtttccaccgcttaataatagggtttccgatcacttacgttttgtgttgttttgttcggtctctggttcttccactgtgatctgttt  2641400                                       --------->YAB1                                        <-------                         <---------ARR14(2)                                                  <-------           <---------WOX13(1)          --------->AHL20(2)                             --------->ANAC58          <---------ANAC58            <---------ATHB12                <---------GLK1(2)      <-------          <---------ANAC58   ------>ZmHOX2a(1)           <---------ANAC46             --------->ANAC58         --------->ATHB12--------->ARR14(2)         <-----------RAV1(1)            ----------->HVH21 ---MYB52(1)            <---------CCA1(2)  --------->GLK1(2) --------->GLK1(1) <---------CCA1(2)   tgttcttaagttgattgtcttaagttatatcctctgttcaataatattctggtcttgttgggggtttccacaggttttctcgtctctgacgcatggcttc  2641500                                       ------>ZmHOX2a(1)                                    <------ZmHOX2a(2)                                    =============HOX2a_HOX2a                                   <---------ARR11(3)                                   <---------ARR14(2)                                   --------->ARR11(3)                                 --------->HSFB2a(1)                           --------->At4g35610                         ================HOX2a_HOX2a                         ========================HOX2a_HOX2a                         ------>ZmHOX2a(2)                         =====================HOX2a_HOX2a                        --------->At4g35610               <---------At4g35610 --------->ARR14(2)               --------->At4g35610<------ZmHOX2a(1)             ==============================HOX2a_HOX2a             <------ZmHOX2a(1)   <---------HSFC1(2)      ===================================HOX2a_HOX2a      ==============HOX2a_HOX2a  --------->HSFC1(2)      ------>ZmHOX2a(2) --------->GLK1(1)     ====================================HOX2a_HOX2a     <------ZmHOX2a(2)  <------ZmHOX2a(2)     ===============HOX2a_HOX2a  <---------HSFB2a(1)    --------->ARR11(3)  =========================HOX2a_HOX2a    --------->GLK1(2)   =================HOX2a_HOX2a    --------->ARR14(2)  ======================HOX2a_HOX2a    <---------ARR11(3) <---------ARR11(3)    <---------ARR14(2) --------->ARR11(3)                                                          --    <---------ARR14(3) <---------AGP1------>ZmHOX2a(2)                                            ---    <---------AGP1     --------->GLK1(2)                                                       <-----    --------->ARR14(3) --------->ARR14(2)                                                      <-----   <------ZmHOX2a(1)   <---------ARR14(2)                                                      ------   =============================HOX2a_HOX2a          <---------At4g35610                       <-----   ============================HOX2a_HOX2a        <---------ZAT14                            -------- --ANAC46    ==================HOX2a_HOX2a------>ZmHOX2a(1)          <---------DAG2         <-------- --ANAC58    ===============================HOX2a_HOX2a              <----------DOF2      --------->WOX13(1) --ANAC58    ===================HOX2a_HOX2a       --------->ZAT14   <---------DAG2    <-----------GT1   taagaggatcttgaaggagctcaaggatctgcagaaggatcctccttcaaactgcagcgctggtaatctcccttttctaatctgattttaaccaattact  2641600  Previous    Next  AGI:  At3g08680.1    Description:  leucine-rich repeat transmembrane protein kinase, putative. Identical to Probable inactive receptor kinase At3g08680 precursor [Arabidopsis Thaliana] (GB:Q9C9Y8;GB:Q93ZK0); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G58300.2); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G58300.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN80590.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21298.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO18314.1); contains InterPro domain Protein kinase, core; Range:  from: 2637598    to: 2640844    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g08690.1    Description:  UBC11 (ubiquitin-conjugating enzyme 11); ubiquitin-protein ligase. Identical to Ubiquitin-conjugating enzyme E2-17 kDa 11 (UBC11) [Arabidopsis Thaliana] (GB:P35134;GB:Q9M9J1); similar to UBC10 (UBIQUITIN-CONJUGATING ENZYME 10), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT5G53300.2); similar to UBC10 (UBIQUITIN-CONJUGATING ENZYME 10), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT5G53300.1); similar to unknown [Populus trichocarpa] (GB:ABK94824.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608); contains InterPro domain Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135) Range:  from: 2641062    to: 2642694    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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