Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           <---------At4g35610                                           <XXXXXXXXXXXXXXXXXXXXMIR844      --------->At4g35610                                          ----------->GT1      <---------ZAT2                                       --------->AHL20(2)    --------->TOE2(3)      <---------At4g35610                             --------->AHL20(2)  --------->YAB1 <---------ZAT14                                      <---------AHL20(2) <---------YAB1 ------->ZAT14                            --------->ARR11(3)   --------->DAG2  <---------ARR11(3) ------------AtSPL8  --------->AHL20(2)   <---------ARR11(3)  ---------->DOF2  --------->ARR11(3) --->DOF2--------->At4g35610             <---------GLK1(1)--------->AHL20(2) <---------AHL20(2) <----   gagtactcggctgctacaaaaaaaaaaatgaagtagttgtttgatatctcttgaatttaaataaaaaaggagtttataataaatcttagcaaagttttct  2519000                                                                                            <--------              <---------YAB1                                                               <---------AHL20(2)             --------->AHL20(2)            <-----------GT1                                 --------->AHL20(2)             <---------AHL20(2)       --------->TOE1(3)                                    --------->AHL20(1)             <---------AHL20(1)       --------->TOE2(3)                      --------->ANAC58       <            --------->YAB1     <---------HSFB2a(2)                           --------->ANAC46      <-           <---------YAB1 --------->ANAC55(2)                                --------->ANAC58   <----   <----------DOF2    <-----------HVH21--------->DOF5.7(2)                  <---------REM1(2)  <----- -----YAB1--------->AHL20(2)--------->ARR14(2)       <---------ALFIN1    ------>ZmHOX2a(1)--------->AHL20(2)   gatacctttcaatattataattgtggtcacgttctgcaaacgttatcacctttgaacacctctaatcttcttctcctctacgcagtcaaaaaaaaaatta  2519100                          --------->LBD16                         <---------HSFC1(1)                         --------->HSFB2a(2)                         <---------HSFB2a(2)    ----------->GT1      --------->HSFC1(1) -ICU4             <---------RVE1(1)                                    <-----------GT1 ---------GLK1(2)  <---------CCA1(1)                               --------->ATHB12 --------At4g35610--------->ARR11(3)                              <---------YAB1                  <-- -----At5g28300   <---------ARR11(3)                       <----------DOF2      <---------ANAC46 ---- ------GT1  ---------->DOF2       ---------->DOF2    --------->ATHB12<---------GLK1(1)      ---------   cagcttctgttaaaaaaagagatatttccagaaactaaaagaagctaagaacagatgatttcttttttatgatttctctatctcgtgaacaaatggcact  2519200                                                                      <---------ICU4                                                                      --------->YAB1                                                                     --------->ICU4                                                                     <---------YAB1                                                                   <---------ICU4                                                                   --------->YAB1                                <---------AHL20(2)                <---------AHL20(2)                               <---------AHL20(2)          ----------->GT1                               --------->AHL20(2)         --------->DAG2                          ---         ----------->GT1   --------->AHL20(2)            ---------->DOF2<---------YAB1           <---      ---------->DOF2    --------->TOE2(3)    ---------->DOF2     <---------ATHB51         --------->AHL20(2) -------TOE2(3)          <----------DOF2     <------ZmHOX2a(1)    --------->AHL20(2) ----------->GT1 ------>DOF2    --------->AHL20(2)  ----------->GT1---------->DOF2--------->ICU4     --------->AtLEC2 >ZAT18--------->DAG2    --------->TOE1(3) <---------TOE2(3)----------->GT1   ---------->DOF2    ----   aaagttggaaaaggagaattaaaacaactttaaataaatagaaataaggaaagaaaagaaaaaggaaaataattataactgaaagaaatgcaaaaaattc  2519300                                                                                                 <---                                                                                                 ----                                                                                                <----                                                                                              <------                                                                                        <---------WOX13(1)                                                                                       >>>>>>>>>ARR2                         <---------CCA1(2)         --------->YAB1                      <------------CBF                       --------->ANAC46            <---------ICU4                     --------->ATHB12                      ------>NtERF2               <---------ATHB51                --------->GLK1(2)      <-------GAMYB   --------->LBD16             --------->ICU4                 <---------ARR11(3)  <------ZmHOX2a(1) <---------LBD16   <XXXXXXXXXXXXXXXXXXXXMIR413                <---------GLK1(2) ------>LBD16  <---------GLK1(2)    <---------HSFB2a(2)                          *TSS<---------YAB1 ------HSFB2a(2) <---------GLK1(1)<---------MYB46(3) <---------YAB1              --------->ARR11(3) ----->HSFB2a(2)------->TEIL    <-------GAMYB----------->GT1            <------ZmHOX2a(1)<---------MYB46(3)   cagaggagcgttgaattgaatctccgcgtctctcggttgtcgaagaagagaaattatgagagttggaatttggaggagatagagattttgattgttgagg  2519400                                         <------------CBF                                       <------MYB83                                       <------MYB46(1)                             <---------TOE2(3)                              --------->ZAT2                                    <---------YAB1                              --------->At4g35610                 <-------GAMYB--------->YAB1                              <---------ZAT2               <---------YAB1      --------->TOE2(3)      ----------->GT1         <---------At4g35610         <---------AHL20(2) <---------AHL20(2) ------ARR14(2)              <---------AGP1              <---------ICU4     --------->YAB1    <------ ----->ARR14(2)     --------->TOE2(3)<--------P      --------->AHL20(2)    <---------YAB1   --------- --ZmHOX2a(1)       <----------DOF2 <-------GAMYB    <---------AHL20(2) <---------AHL20(2)<---------GLK1(2) ---TOE2(3)   --------->TOE1(3) --------->ALFIN1  <----------DOF2----------->GT1<---------AHL20(2)   aaatgggagagtttatccctaactttagatagagctggggttggattgagagcttttaatttttatggggttattttataatattaatgaaagattgtga  2519500                                                             <---------TOE2(2)                                                             <---------TOE1(2)            <------NtERF2                                                            <-----------RAV1(2)   <---------YAB1                                                   --------->ICU4            <---------ICU4                                                   <---------YAB1            --------->ATHB12                                      --------->ANAC58 ----------->TGA1      --------->YAB1     ----------->GT1   <---------ANAC46          --------->ATHB12     <----------DOF2     --------->At4g35610 ---YAB1       <-----------GT1        --------->ANAC58 ----------->HVH21     -------->ATHB1        <- -->GT1   <---------YAB1              <---------ANAC55(2) <---------ANAC46  <---------ATHB12   <-----   ttttgaaacgttactatttacaactacgtagagattggataagtaagagagtcattagtgacgcaggtttaactttgaatcattgttatggcagcaagat  2519600                   --------->TOE2(3)                   --------->TOE1(3)          ------>ZmHOX2a(1)                                <---------WOX13(1)      <-----------GT1           --------->YAB1           --------->ATHB12  ------->TEIL    ----------->GT1                       <---------YAB1         <------ZmHOX2a(1) --------YAB1 <---------DAG2<---------YAB1              --------->ICU4        <----------ID1 ----GLK1(2)  <----------DOF2  <---------YAB1<----------DOF2       <-----------HVH21   ----------->GT1   tatgaatttctccttacttttcgttaaatgactattatagccctgaactttgtttgtattgattggctctgtcatttctaaggacaaatgtgtaatttca  2519700                                                                                            ---------                                                                                          <----------                                                                                      --------->YAB1                                                                                      <--------HAHB4                                                                                      <---------ICU4                                                                                      <---------AHL20(2)                                                                                      -------->ATHB1                                                                                      -------->HAHB4                                                                                      --------->ATHB51                                                                                     --------->ICU4                                                                                     <---------ATHB51                                                                                     <---------YAB1                                                                                   <---------ICU4                                                                                   --------->YAB1                                                                                  --------->AHL20(2)                                                                                  <---------ATHB51                --------->ANAC58                                                  --------->ICU4                --------->ANAC58                                                  <---------AHL20(2)               --------->DAG2                           --------->CCA1(2)        <---------AHL20(1) -              ---------->DOF2   <-------TEIL <---------AHL20(2)            ----------->GT1<<<<<<<<<<<       ----------->GT1  <---------ANAC58    --------->AHL20(2)        --------->CCA1(2) <---------YAB1      ----------->GT1   <---------ANAC58    <---------AHL20(2)   ---------->DOF2--------->YAB1      -   taaacgatgtgttaaataaagcaatttcttgatgttcatatcagatttaaattgcaagatagagagagaaagagacgatgtaaaataattattaacactg  2519800     <---------AHL20(1)                          --------->At4g35610     --------->AHL20(2)                         --------->ALFIN1    --------->AHL20(2)                         <-------MYC3    <---------AHL20(2)                         ------->MYC3 >ZAT6      <---------AHL20(2)                 <-------MYC2 -GT1<---------AHL20(2)                        ------->MYC2                                     ----- -------->ICU4                            <---------AHL20(2)                                 -------- <<<<<<LFY --------->AHL20(2)       ----------->GT1     ----------->HVH21------->TEIL  <-------TEIL -------->AHL20(2)                  <---------DEAR3(2)<---------TGA1a   <---------CCA1(2)   <--------   gatttattaaattttaaatttcaaattccacaattcgtcggtaataaaacgtgctgaagtgacatatagcatatgtatctaatgtgatgttcatatgata  2519900  Previous    Next  AGI:  At3g07890.1    Description:  RabGAP/TBC domain-containing protein. similar to RAB GTPase activator [Arabidopsis thaliana] (TAIR:AT2G39280.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23986.1); contains InterPro domain RabGAP/TBC; (InterPro:IPR000195) Range:  from: 2516310    to: 2519381    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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