Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                    <---------YAB1               <<<<<<<<<MYB2        <---------MYB52(1)       <---------RAP2.6(3)      --------------->AGL15      <---------------AGL15                             ---------->DOF2     --------->MYB52(1)     ----------------->AG                      <-----------GT1             ----------->HVH21     <-----------------AG                    --------->AHL20(2)        <---------ANAC58     ----------------->AGL1                  <---------AHL20(2)        <---------ANAC46     <-----------------AGL3              <---------AHL20(2)    ---------->DOF2  --------->At5g28300 <     <-----------------AGL1     <---------ANAC58      <----------DOF2  <---------ANAC58             <     ---------->ID1--------->YAB1        --------->AHL20(2)<----------ID1<------NtERF2   --------->GLK1(2)     <-----------------AGL2     <---------ANAC58    <---------------------WRI1 ----------->GT1 ------   acaccttgccgtttttggttttcataagaagaatgcttcccgtttaattaaaccggcttaaagaacaaagaaggcgtctaacggttaaaagaatcgattt  2196700       <---------TOE2(3)    <---------ARR14(2)    --------->ARR14(2)  --------->LBD16                                                                              ------ <---------ANAC46                                       <------ZmHOX2a(1)                     ------- -----------------AGL2                       ---------->DOF2                               ---------- ---------LBD16                          <------ZmHOX2a(1)  <----------DOF2     --------->ATHB12 --->AHL20(2)    -------->ATHB1 ---------->DOF2     --------->TOE1(2)<-------TEIL      --------->TOE2(3)   attccggttatggattgaattattcggtttgaataaaagagtaggaacaaagaaactaggaactttagaaattcatatcaattcatttgcctcaaaagct  2196800                                                    --------->ANAC46                                                    ------->GAMYB                                                   --------->MYB46(3)                                                  <---------At5g28300                                                 <-----------GT1                                                 --------->MYB52(1)                                              --------->YAB1            <---------ARR11(3)                                            <---------AHL20(2)    --------->ANAC55(2)                                            --------->AHL20(2)    <---------ANAC55(2)                                        -------->HAHB4          <---------ALFIN1                                        --------->ATHB12      ----------->RAV1(1)                                        --------->YAB1  <---------At4g35610            <---------AHL20(2)                                        <---------ICU4  --------->ZAT2  --------->ARR11(3) --->TOE1(3)                           --------->ICU4   <---------ZAT2 --------->RVE1(1)    <-------- ---->GT1               <---------YAB1 <---------ATHB12 --------->At4g35610       <----------DOF2  <- >DOF2                <-----------GT1  <---------YAB1--------->LBD16   --------->CCA1(1)   <---------ICU4   taaaattcaatgtttgctatggaattaccagtgtctatgtaatgattaaaataaccgcagctagcgacacataatatctcgatgcttttttaatctttat  2196900                                                          <---------ANAC58                                                          <---------ANAC58                                                        <---------ANAC46                                                       <------MYB83                                                   <------MYB83                                                   <------MYB46(1)                                                   <---------MYB46(3)                                                  --------->MYB111(2)                                                  --------->MYB46(2)                                                  --------->MYB55(2)                                                  <---------AtMYB61                                                  <---------MYB46(3)                                                  --------->MYB111(1)                                                 <--------P                                                 <---------MYB55(1)                                           <---------AHL20(2)        <---------AtLEC2                                          <---------AHL20(2)--------->ALFIN1  ------>ZmHOX2a(1)                                      <----------DOF2  <------MYB46(1)    <---------ARR14(2)                                   --------->ARR11(3) --------->MYB111(1) --------->ARR14(2)        --------->AHL20(2)         <---------ARR11(3)<--------P  <---------ANAC46               ----- --DOF2 --------->YAB1          --------->DAG2 <---------MYB46(3)<---------ANAC58              <----- ---------DOF2                 ---------->DOF2 --------->ATHB12  <---------ANAC58  <------ZmHOX2a(1)   tctttgtgaataatatacaaatgtttagaagagaaaagttcttttttaatggttggtagggggtgtttcgtgcatggttcctctaggattccaacttggt  2197000                                                                                  ----------->TBP                                                                                --------->CCA1(2)                                                                       <---------ARR11(1)                                                             <-------MYC3      --------->ARR11(3)                                                        <-----------HVH21     <<<<<<<<<RAP2.2       <           ---------->DOF2      --------->TOE1(3)    ------>MYB46(1)   <---------ARR11(3)   ---------         <---------AHL20(2)   ------->TEIL      <---------ALFIN1       ------->TEIL         --------- ---->WRKY18(1) --------->ARR11(3)      <-----------HVH21    ------->MYC3 <----------DOF2   --------- ------HVH21   <------ZmHOX2a(1)--------->TOE2(3)    ------>MYB83     <---------CCA1(2)     ---------   caggcttatatataaaaggaccttgagttttgaaccctaaaccatcagacacaccttccttcacatgcttctgtatctttagatatatatacacacgcaa  2197100                                                                                    <------NtERF2                                           --------->ARR14(2)                       --------->ATERF1(1)                                        <---------ANAC58                           ------>NtERF2                                   <---------ANAC58                               <---------DEAR3(1)                                   --------->MYB52(2)                             ----------->HVH21                               <------MYB83<---------ARR14(2)                     --------->ETT(2)                               --------->HSFC1(2)                                <------NtERF2                               --------->HSFB2a(1)                               --------->ATERF1(1)                               <------MYB46(1)                                  <---------ATERF1(1)                               <---------HSFB2a(1)                             --------->ALFIN1                               <---------HSFC1(2)                              <---------ANAC46                               <---------MYB46(3)                              <---------DEAR3(1)                             *TSS  <---------ANAC46                          <---------MYB46(3) -------TEIL            <---------ICU4  <---------ANAC58                    --------->ALFIN1 >ANAC58               <---------YAB1   <---------ANAC46                  <---------ANAC46       <--- >ANAC46               --------->ICU4  <------NtERF2                      <---------ANAC58       ==== >ANAC58             --------->YAB1<---------ANAC58  <---------At4g35610  <---------ANAC58     ------ >ANAC55(1)         <---------YAB1<-------TEIL   <----------DOF2      ---------->DOF2<---------ANAC46   aatacatccctctctctaaaacatcataatgggaggttcgtggcgtttcttctttagcttcttcggcagtttcaaagcgtggtggcgacggagacagaga  2197200                                                           <---------WOX13(1)                     <--                                                         --------->ATHB12                    --------                                                         --------->ATHB51                    <------ZmHOX2a(2)                                                      --------------->AGL15                 ---------                                                      --------->HSFB2a(2)                   ---------                --------->SPL7                        <---------------AGL15                 <--------              <---------SPL7                         ----------------->AGL2                 <--------             --------->MYB46(3)                      ----------------->AGL3                 ---------           --------->MYB52(1)               --------->ANAC58    --------->SPL7             <---------GLK1(1)          <------ZmHOX2a(1)                 --------->ANAC58<---------------AtSPL8         --------->GLK1(1)   <-----------RAV1(2)               --------->ARR11(3) <---------YAB1 --------->WRKY12   ----------- ---ZmHOX2a(2)--------->TOE1(2)      <---------ARR11(3) <---------AHL20(2)              --------->LBD16 ================HOX2a_HOX2a  ----------->GT1        <-----------------AGL3           <---------LBD16 --->GLK1(1) --------->DEAR3(2)    <---------YAB1    <-----------------AGL2         <-----------GT1   tcgaaccaggcaggaacggacgatgagatgtatggtgaagatagtgaagccaacttctataattggtacctcgttgaaccagctattaaccggagatcca  2197300                            ----------->HVH21                          --------->O2                          <---------O2                          --------->TGA1a -------ATHB12     <---------O2 ->CCA1(2)         --------->O2 >ARR14(2)         --------->ANAC46 >ARR11(3)    --------->ARR14(2)                                           --------->ANAC55(2) -ARR14(2)    <---------ARR14(2)                                           <---------ANAC55(2) -ARR11(3)  --------->HSFB2a(1)                 <---------YAB1 <---------At4g35610 >AGP1      <---------HSFB2a(1)<---------WOX13(1)  <---------YAB1     <---------------AtSPL8 >ARR10    --------->DAG2 <---------TGA1a<---------ALFIN1      --------->At4g35610   ctgatttcatcaaaaggttccacgagactcgtgactgattccatcaccttcttattcttctcttcagctcttggagtacgtagtagtttggaagaaaatt  2197400                                                                       <---------WRKY38(1)                             <---------ANAC58                         <<<<<<<<<<WRKY43                             <---------ANAC55(2)                --------->ATHB12                             --------->ANAC55(2)               ------>ZmHOX2a(1)                             <---------ANAC55(1)               <---------YAB1                <---------ANAC58                              --------->TOE2(3)                <---------ANAC58                        --------->AHL20(1)             <---------ARR14(2)                         --------->AHL20(2)             --------->ARR14(2)                         <---------AHL20(1)           --------->LBD16   <---------ANAC46          --------->YAB1 --------->WRKY18(1)         <---------LBD16     <---------ANAC58       --------->YAB1    <<<<<<<<<<WRKY26        <------        <-----------GT1<---------ZAT14             <---------ATHB12   <<<<<<<<<<WRKY38        <------       <-----------GT1 --------->ZAT14             --------->AHL20(2)<-----------HVH21        <------   tgtttgttttttccggtttcgtctctgtagtacgtgttttctatgtgatttcaataaatataatcctcattggtcaagtctatcgagttgaatattatgt  2197500                                                         <---------ZAT6                                                   <------MYB83                                                   <------MYB46(1)                                                   --------->MYB55(2)                                                   <---------MYB46(3)                                            --------->WOX13(1)               --------->TOE2(3)    --------->YAB1<---------TOE1(2)                              ----               <---------DAG2--------->ANAC46  --------->ATHB12                                <-----               <---------MYB59     <---------YAB1 <---------TOE2(2)                            <-----          --------->ANAC55(2)--------->ANAC58  <---------MYB46(3)                              <-----   <-----------GT1 <---------YAB1  <---------ATHB12--------->MYB52(2)                     <---------CCA1(1) ---ANAC46--------->ANAC46   --------->ANAC58 <---------ATHB12                           <---------ARR14(2) ---ANAC55(1)------->TEIL   --------->SPL7<---------ATHB12                               <---------ARR11(3) ---YAB1 --------------->AtSPL8    --------->ICU4<---------MYB52(1) ---------->DOF2      --------->ARR14(2)   gtgtttttctctacgtaccttattaatgcatacgacaatgataaatcaatcgttggtttgtgttatatatcaaagaaacacaaaaacagtggatatttct  2197600  Previous    Next  AGI:  At3g06962.1    Description:  other RNA Range:  from: 2197129    to: 2197338    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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