Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                  --------->ANAC58                                                --------->ANAC58                                             <---------ARR14(2)                                        <------NtERF2                                       ----------->RAV1(1)                                       ------>NtERF2                                      --------->RRTF1(2)                                      --------->ATERF1(2)                                      <---------ATERF1(2)                                      --------->DEAR3(1)                                      --------->ANAC46                                      --------->RAP2.3(2)                                      --------->RAP2.3(3)                                  ----------                                      --------->DREB2C(2)                              ----------->HVH21                                     --------->ERF1                       <---------MYB52(2)                                     --------->RAP2.3(1) =====================================HOX2a_HOX2a                                     --------->ORA47(2)  <------ZmHOX2a(2)--------->MYB46(3)                                    <---------ATERF1(1)------->GAMYB ----------->GT1   ------>ZmHOX2a(1)          <---------YAB1      --------->ANAC58  <----------ID1 <----------DOF2       ----------->RAV1(2) ----->ATHB12                 --------->ANAC58  --------->ANAC46  --------->YAB1   <---------ALFIN1 -----ATHB12      <-----------HVH21--------->DEAR3(1) --------->MYB46(3)  <------------MYB.PH3(2) -->WOX13(1) <---------YAB1 ---------->DOF2  --------->ARR14(2)--------------------->WRI1 <---------WOX13(1)   cattgaagtattctgatcaatgtcaattgcaaaagcatcgccgccagaatacgacaacgatccatctttgatagtaacaaactcccctcctgactgacat  2192200                            ------>MYB83                                                            -                            ------>MYB46(1)                                                         -                            --------->MYB52(1)                                                    ---                 <---------MYB46(3)                                         --------->ANAC46      <--              <------MYB83<---------MYB59                                  --------->ZAT18       <---              <---------MYB46(3)                                       --------------->AtSPL8   -----              <------MYB46(1)                    <---------ATHB12  --------->TOE2(3)           ------             <---------AtMYB61                 ------>MYB83       --------->ANAC46     --------->YAB1          <-----------RAV1(1)                  ------>MYB46(1)<-----------GT1      <---------AHL20(2) ->HVH21<----------DOF2   --------->MYB46(3)----------------->AG<---------ALFIN1  --------->AHL20(2)-   atagctatgactttgttggtggtcatgaccaaacgatacctataaaaccaaatcaggctctatatcacacctcaatgtacacaattttatcaaaatcagc  2192300             --------->ZAT14             <---------SPL7             <---------ZAT14 ------->GAMYB -------->ANAC58                                                                                  --- -------->ANAC58       --------->AHL20(2)                                                         --- ------>MYB52(1)       <---------AHL20(2)                                  --------->AHL20(2)     <-- -------ATERF1(1)     --------->AHL20(2)                          --------->ARR14(2)              <-- ------WRKY38(1)--------->ANAC46                --------->TOE2(3) <---------ARR14(2)         <------- ---->MYB46(3)  --------->ANAC58              ------->TEIL        --------->GLK1(2)   =============== --->At4g35610 --------->SPL7             --------------->AtSPL8 <---------GLK1(2)    <------ZmHOX2a(2) -------->ANAC46--------->ANAC58      <---------TOE2(3)      ---------->DOF2         <---------ARR11(3)   caacgccatggccactgtacgaaatttaaaaacttctattaagttatgaaccctaatttccaaaaaagaatctgaaattgaatactagatcacaattctg  2192400              ------>ZmHOX2a(2)                                                                   ---            <---------ARR14(2)                                                                    ---            --------->ARR14(2)                                                                    ---           <------ZmHOX2a(1)                                                               <---------MYB52(1) ------>bZIP60(1)                                                                        <---------ANAC46 ------>TGA2(1)                                                                          ----------->GT1 -------TGA2(1)                                                                    <---------------AtSPL8 -------bZIP60(1)          <---------MYB52(2)                    <-----------HVH21 <---------------AtSPL3 --ICU4--------->ICU4 ----------->GT1               ----------->GT1          --------->ARR11(3) <---- =================HOX2a_HOX2a                     <-----------RAV1(2) ---------->DOF2<---------SPL7   acatcagaaatgaggatcggaagggggaaacaaaccctactatcgaactgaaccaggttaaatctagggtcagaaagaagacattggagtaccgtttatt  2192500         <---------WOX13(1)       --------->ATHB12      <---------YAB1    ----------------->AGL1  ------>NtERF2 --------->DEAR3(1)                         ----------->GT1       <---------DAG2 ------>ANAC46                  --------->GLK1(2)                 <----------DOF2 ------>ANAC58                 <---------GLK1(1)      <---------AHL20(2)      --------->ZAT14 ------>ANAC58   --------->At4g35610       ----------->GT1    ------>NtERF2   --------->At4g35610 -------GT1   ---------->DOF2  <---------GLK1(2)     --------->AHL20(2)       <---------At4g35610 <--   acgccagcctgattgagaaagctcaagaattgggaatctcttcgatgggaaaatataaaattgccgagctttttttcttctgcagaccgagagagagaga  2192600                            --------->ANAC58                            *TSS <------NtERF2                            --------->ANAC58                           <-------TEIL                           --------->SPL1(2)                           ------->TEIL                           --------->SPL7                         <---------SPL7                                       --------->TOE2(3)                        --------->ANAC58                                      --------->TOE1(2)                        --------->ANAC46                        <---------ANAC58                        --------->ANAC58           <---------bZIP60(1)        --------->TOE2(2)                       <---------------AtSPL3      --------->GLK1(1)   ---------->DOF2                      <------------------SPL14----------->GT1   <---------ANAC46                 <---------HSFC1(2)         --------->DAG2      <---------ANAC58 ----ZmHOX2a(1)  --------->HSFC1(2)       ---------->DOF2      <-------TEIL ------->TEIL   *TSS    <-   ggagatggtgagagtttgaaacttccacgtacggcctcagagagaaaagggtgatatcaaaacgatgcgtttagaaagaacctaagaattagagtagcat  2192700                                                              <---------ARR14(2)                                                           ------->GAMYB                                                         -------->P ------->TEIL                -----                                                         <---------At5g28300                    -----                                                        --------->MYB52(1)                      -----                                                      --------->MYB46(3)                        <----                                                      <---------MYB111(1)                       <----                                                      <---------MYB46(2)                       <-----                                                      <---------MYB52(2)              ---------------        --------->WOX13(1)--------->SPL7     <---------At4g35610 --------->ANAC46     <--------------      <---------ATHB12<---------ATHB12       --------->At4g35610 --------->ANAC58    ----------------    ------>MYB46(1) --------->MYB52(1)    <---------At5g28300 --------->ARR14(2)     ----------------    ------>MYB83  --------->MYB46(3)     <-----------GT1<-----------GT1     ---------->DOF2 --------- ----------GT1  <-----------GT1 ----------->HVH21 <---------MYB59--------->ANAC58 <----------DOF2   taaaccaaatcaatctaataaccaatggtccggtctgaccaatttaccgctccctaactaaccgtatacgcaccgttttaaagtctttccctaatcagaa  2192800 ---->ARR11(3)                                    >>>>>>>>>TBF1 ---->ARR14(2)                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ---->GLK1(2)                            >>>>>>>>>TBF1 -----ARR11(3)                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  <---------ANAC58 -----ARR14(2)                 ---------->DOF2   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ----GLK1(2)             <------NtERF2>>>>>>>>>TBF1     >>>>>>>>>TBF1          <---------ANAC46 >AGL15                  <---------At4g35610   >>>>>>>>>TBF1  >>>>>>>>>TBF1    <---------ANAC58  ---- -AGL15                  --------->At4g35610>>>>>>>>>TBF1  >>>>>>>>>TBF1       --------->ANAC55(2) ->AGL2               XXXXXXXXXXXXXXXXXXXX>MIR851-3P >>>>>>>>>TBF1    <------ZmHOX2a(1)   <---------ALFIN1 ->AGL1             <---------------------WRI1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --------->REM1(1) >YAB1          --------->CCA1(2)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     <---------ANAC55(2)  -   tcttgagattacacagagagacagggcagcaaacaaagaagaagaagaagaagaagaagaagaagaagaagaggatgagttgcgttacaccagcacttcc  2192900                                               <---------MYB52(1)                                              --------->LBD16                                        --------->ARR11(3)                                 ------>ZmHOX2a(1) --------->ANAC46                          <---------ANAC58   --------->ANAC46                    <---------ARR11(3)  <-----------ARR10                                         ---                    --------->ARR11(3)  --------->ARR14(2)            <<<<<<<<<TBF1             -----                    <---------ARR14(2)  <---------ARR11(3)        <---------ARR11(3)            -----                    --------->ARR14(2)  <---------ARR14(2)  --------->ANAC58             <---------GLK1(1)       <----------DOF2    <---------ANAC58  <---------LBD16 --------->ANAC58       <---------ANAC58 -->ZmHOX2a(1)     <---------GLK1(1)   --------->RVE1(1)  ---------->DOF2          <---------ANAC46 ----->ZmHOX2a(1)  <---------CCA1(2) <---------GLK1(2)----------->RAV1(1)          <---------ANAC58   tccttcactctttactaatgggtatctttcgtctcctcagaatatctccgtaagcgccacaaaagcaatttcttcttctctacttccttggaaatgccaa  2193000                                                                           --------->MYB52(2)                                                                         <--------P                   <---------At4g35610              ------>MYB83      <---------TOE1(3)                   --------->At4g35610         >>>>>>>>>>WRKY26       <---------TOE2(3)             -         <------MYB46(1)                       >>>>>>>>>>WRKY38  <------MYB83               <--------         <------MYB83                          >>>>>>>>>>WRKY43  <------MYB46(1)        <---------ANAC46     <-----------RAV1(1)  <----------DOF2   <---------At4g35610 --------->MYB59         <---------ANAC58 ------->DOF2 <---------TGA2(1)             --------->At4g35610 --------->MYB46(2)      <---------ANAC58 ---->ANAC58  --------->bZIP60(1)   <---------YAB1  -------->P<---------MYB52(1)--------->GLK1(2)  <- ---->ANAC58  <---------bZIP60(1)<---------AHL20(2) ------>MYB46(1) ---------->DOF2<-----------RAV1(1)   gaaagttttgttggtgatgtaatctgaacttttgttttatttttgcagatgaccaacttgaacagttcggtaaaggttagtgattctggtgcttataaat  2193100  Previous    Next  AGI:  At3g06940.1    Description:  transposable element gene. Mutator-like transposase family, has a 1.1e-42 P-value blast match to GB:AAA21566 mudrA of transposon=""MuDR"" (MuDr-element) (Zea mays) Range:  from: 2189485    to: 2192628    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g06950.1    Description:  tRNA pseudouridine synthase family protein. similar to tRNA pseudouridine synthase family protein [Arabidopsis thaliana] (TAIR:AT1G34150.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70934.1); contains InterPro domain tRNA pseudouridine synthase; (InterPro:IPR001406) Range:  from: 2192691    to: 2194327    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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