Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                            --------->TOE2(3)                     <---------AHL20(1)                     --------->ARR11(3)                --------->AHL20(2)                <---------AHL20(2)    <---------ICU4               --------->AHL20(2)    --------->ICU4                               --------->YAB1               --------->YAB1   ----------->GT1                             --------->HSFB2a(2)         --------->YAB1  ----------->GT1                                    <---------HSFB2a(2)     - ---MYB59--------->HSFB2a(2)    --------->YAB1                         --------->MYB52(2)       <---- --GT1<----------DOF2--------->AHL20(1)       <---------YAB1        <---------GLK1(2)--------->MYB52(1)   aattcaaactttcagaattaaaatatatcgtcaattgtaaaaattagtatgaaaaccatcttcaatctcagattagttacagaaaaataacagagtttcg  2189000                                                                              >>>>>>>>>MYB98                                                                           --------->At5g28300                                                                   <---------LBD16 --------->ANAC58         ----------->GT1                         --------->YAB1    --------->At4g35610  <-------MYC3      <---------REM1(1)                       --------->YAB1       <---------At4g35610  ------->MYC3  --------------->AGL15     <-----------GT1--------->YAB1         --------->MYB52(1)   ----------->GT1 -------->At4g35610--------->MYB52(1)----------->GT1            --------->MYB46(3) --------->ANAC58 -------TGA1     <---------MYB52(2) ----------->GT1        --------->YAB1 ----------->GT1   tcatcttcatgtagcaaaaacaaacgttttaaacgagatgggaaaaaataatcaaaaccgataagaaccagcggaacagtaacataagcatgtgaatcga  2189100                                                                     ----------->HVH21                                                                     <---------MYB52(1)                                                                    <-----------HVH21                                                                    --------->LBD16                                                                   <---------ANAC58                                                                   <---------ANAC55(2)                                                                   <---------ANAC46                                                                   --------->ANAC55(2)                                                                   <---------ANAC58                                                               --------->ZAT2                    <------ZmHOX2a(2)                          --------->GLK1(1)                   <---------ARR11(3)                          <---------ZAT2                  ------        --------->At4g35610                             <---------GLK1(1)                     -------        <---------At4g35610                --------->GLK1(2)   <---------GLK1(1)      <------ZmHOX2a(1)   <---------At4g35610                     <---------ARR14(2)  <---------At4g35610  <---------TOE2(2)   --------->At4g35610        <<<<<<<<<<<<<<<<<LFY      --------->GLK1(1)         --------->TOE2(2)--   ----------->RAV1(2) <---------YAB1      --------->ARR14(2)  --------->At4g35610--------->TOE1(2)<-   cattcacctgagcggaagcgagatcaaaattgaaacaatgggtcgaatccgattgcagaaatcggagctccgtgactccatcaacgtaggaaaacgtagc  2189200            <----------ID1           --------->SPL7          ==================================HOX2a_HOX2a          --------->At4g35610 <---------ZAT2--------->ANAC58                  <---------------AGL15 <---------At4g35610                             --------------->AGL15      <---------DAG2 --------->ZAT2--------->ANAC46                 --------->ZAT6   <---------At4g35610     --------->ARR11(3) --------->At4g35610--------->ANAC58        <---------WOX13(1)   --------->ZAT2          <---------ARR11(3) --->At4g35610 --------->ANAC58          ----------->HVH21       <---------ZAT2          <---------ARR14(2) >TEIL    <------ZmHOX2a(1)        <---------GLK1(1)           <-----------RAV1(2) --------->ANAC46 ------->REM1(1)    --------->ANAC58 <------ZmHOX2a(2)   --------->ZAT14    <----------DOF2        <- ----------RAV1(2)--------->MYB52(1) <---------ZAT14---------->DOF2 --------->At4g35610  --------->ARR14(2)   tacagctggagaggacgacgaaacggaagacgaagagagatcagtgactgactctaaagagtactccagctgctcaagctttttcacagaagatacctcc  2189300                                                                               --------->At4g35610                           <-------TEIL                                        --------->ZAT2                          --------->CCA1(2)                                    <---------ZAT2*TSS       --------->MYB52(1)<---------ARR14(2)                                    <---------At4g35610  <-----------GT1        --------->ARR14(2)           ------->TEIL   <---------TOE2(3)  --------->ARR14(2) --------ICU4    <---------KAN4(2)    ------->TEIL --------->ANAC46  <---------TOE1(3)  <---------ARR14(2)   atttttacaaaacgatgcgaatgtacagatacagtctctgtatgtgtgtgtaaacgaagcttaagaattttagggtttttctgctgagagtttccgaact  2189400                         <---------------AGL15                         --------------->AGL15                        <------NtERF2                       --------->LBD16                       ------>NtERF2                       <---------RAP2.6(3)                      --------->DEAR3(1)                      --------->RAP2.6(2)                              <---------YAB1                      --------->ANAC46                                 --------->ICU4        <-------TEIL                      --------->RAP2.3(2)                            --------->YAB1  ----------->GT1                      --------->RAP2.3(3)             --------->ANAC55(2)          >>>>>>>>>ARR1                     --------->RAP2.3(1)              --------->YAB1--------->ICU4 >>>>>>>>>ARR1                     --------->ERF1              <----------DOF2    <---------YAB1 <------------CBF                 ---------->DOF2               <------NtERF2   <-----------GT1     >>>>>>>>>ARR2             ----------->GT1            --------->MYB52(1)  <---------ICU4         >>>>>>>>>ARR2 ----             <---------ZAT6---------->DOF2    ------>NtERF2--------->ICU4         <------ZmHOX2a(1)   ctctgagagggagaagagttaaagccgccaaaaggagtaatgaaacggtggcattttcgtaatttttactatgattatgggataggattgtaagttacat  2189500                                                                  <---------ARR11(3)                                                                  <---------ARR14(2)                                                                  --------->ARR14(2)                                                             -------->P                                                             ------>MYB83                                                             ------>MYB46(1)                                                           --------->AtMYB61                                                           ------->GAMYB                                                          <---------MYB52(2)                                                          --------->MYB46(3)                   ------                                                          <---------MYB55(2)                   <-----      --------->TOE2(3)       --------->DAG2             --------->ANAC58         --------->DAG2 <---------AHL20(2)          ---------->DOF2             --------->ANAC58        ---------->DOF2 --------->AHL20(2)      <------ZmHOX2a(2)               -------->P   <---------------------WRI1----- ----->AHL20(2)  --------->AHL20(2)                     --------->WOX13(1)----------->GT1 <----------DOF2   ttattaattcttaaaccaatttcatagatcaaaaagttcgaatgtgaatgtcatacatcaaccaacaagttctgcgaagaaaaaaaagctcgctttgatc  2189600            <---------RVE1(1)            <------ZmHOX2a(2)           <---------ARR11(3)           --------->ARR14(3)           --------->ARR11(3)           --------->AGP1           --------->ARR14(2)           <---------ARR14(2)                      <---------ARR11(3)           <---------ARR14(3)                --------->CCA1(2)           --------->MYB46(3)     --------->MYB52(1)                      <------ZmHOX2a(2)          -------->P    --------->TOE1(2)       --------->ANAC58--------->ARR11(3)         --------->MYB52(1)   <---------MYB52(2)       --------->ANAC58--------->AGP1           <---------MYB52(2) --->At4g35610              --------->ANAC46<---------ARR11(3)     <-----------GT1                 <- ----At4g35610<----------DOF2              <---------GLK1(1)   --------->TOE2(3)       --------->MYB46(3) ->ZmHOX2a(2)------>ZmHOX2a(2)             --------->GLK1(1)   <----------DOF2      ------>ZmHOX2a(1)   tgaaaacgaacgagatctttattcttcatcacacaagaagagaagagatccaaaatcatctactactttaaactaaccaaaacatcctaacaactaagta  2189700                                                      =========================================bZIP_DOF                                                      <---------ANAC58                                                      <---------ANAC58                                                      <---------bZIP60(2)                                                      <---------TGA1a                                                      <---------O2                                                     <---------TOE2(3)                                                    <---------TGA2(2)                                                   ----------->HVH21                                                   ----------->TGA1                                                 --------->ZAT2           <---------ANAC58                   --------->ZAT14           <---------ANAC58               <---------ALFIN1   <---------AtLEC2                      <---------ZAT14      <---------ICU4            <---------YAB1   <---------ANAC58                 ------->PIF5 --------->At4g35610   --------->MYB46(3) -----------   <---------ANAC58                 <-------PIF5 <---------At4g35610 --------->MYB52(1)<---------ARR11(3) ---------DOF2         ------>ZmHOX2a(1) --------->ZAT14   --------->YAB1           <----------DOF2 <   gctttgcatgttttcttgttatgtcctagtcccttgcacttgctacactgtagctgacgtttcatcatgtccaacggctcaaccttctttatctttggtc  2189800                                                     =======================HOX2a_HOX2a                              --------->AtLEC2      <---------ARR14(2)                        ====================================HOX2a_HOX2a             --------->ALFIN1 --------->ANAC58  <---------LBD16            --------->LBD16   --------->ANAC46 ------>NtERF2           <---------ANAC58   <---------ANAC55(2)   --------->ARR14(2)           <---------ANAC58   --------->ANAC58 --------->LBD16           <---------ANAC46   --------->ANAC55(2)  <------NtERF2         ------>ZmHOX2a(1)<-----------HVH21   <---------DEAR3(1)                    <-----------RAV1(2)     <---------ZAT18    <------ZmHOX2a(1)    --------->SPL7                      ----------->HVH21  --------->LBD16  --------->ALFIN1          <---------LBD16                --------->ATHB12 --------->LBD16<---------MYB46(3)     -------->P <---------MYB46(3)     --------------->AGL15 ---------->WRI1--------->MYB55(2)    <-----------GT1<------ZmHOX2a(2)  <-----------------AGL1 ---------LBD16--------->ALFIN1     <---------MYB52(2)               ------>ZmHOX2a(1)----------->GT1   ttcccggtgtcctccgtgtgggtggaggagtcacgcaaactaacccctccggcggatcatccagcatcatcctgtccatgtttgggacaggttgaatcga  2189900  Previous    Next  AGI:  At3g06930.1    Description:  protein arginine N-methyltransferase family protein. Identical to Probable histone-arginine methyltransferase CARM1A (CARM1A) [Arabidopsis Thaliana] (GB:Q84W92;GB:Q0WRU3;GB:Q66GI8;GB:Q9M906); similar to protein arginine N-methyltransferase family protein [Arabidopsis thaliana] (TAIR:AT5G49020.2); similar to protein arginine N-methyltransferase family protein [Arabidopsis thaliana] (TAIR:AT5G49020.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70989.1); similar to hypothetical protein OsI_026330 [Oryza sativa (indica cultivar-group)] (GB:EAZ05098.1); similar to unknown [Populus trichocarpa] (GB:ABK94929.1); contains InterPro d Range:  from: 2185160    to: 2189393    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g06940.1    Description:  transposable element gene. Mutator-like transposase family, has a 1.1e-42 P-value blast match to GB:AAA21566 mudrA of transposon=""MuDR"" (MuDr-element) (Zea mays) Range:  from: 2189485    to: 2192628    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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