Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                        <---------AHL20(1)                                                                                      <---------AHL20(2)                                                                                      --------->AHL20(2)                                                                                   --------->AHL20(1)      <---------DAG2                                                              --------->ATHB51      <----------DOF2                                                             --------->AHL20(2)  ------>ZmHOX2a(2)                                                               <---------AHL20(2) ---------ARR14(2)                                                                <---------ICU4 -------->ARR14(2)              ---------->DOF2         ---------->DOF2          <---------YAB1 -------->ARR10     --------->MYB52(1)               --------->ANAC58       ----------->GT1 -----ANAC58      ------>ZmHOX2a(2)                  --------->ANAC46   ---------->DOF2            *TSS -----ANAC46    --------->ARR11(3)                   --------->ANAC58  --------->AHL20(2)    -------- -----ANAC58    <---------ARR11(3)            ----------->GT1    ----------->GT1 --------->ICU4   --- -NtERF2  <---------YAB1<----------ID1       <---------------------WRI1<---------AHL20(2)    <-------   ttgatccgctttatgaatgatctaatggaacaaaaaaagagagatagagagaaaaacgcaaagaagatggaaattaaagagtaattattttatttcaaca  1843100                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                    -                                                                                                    <                                                                       <---------DAG2             ---                                                                       <----------DOF2            ---                                                                    <---------ALFIN1             ----                 <---------At4g35610                          --------->At4g35610         <----------            <---------ZAT14            <---------At4g35610    --------->ZAT18           <-----------GT1 ------->AGL15  --------->ALFIN1 <---------MYB46(3)         --------->ZAT18<---------ANAC58     <---- ------->DOF2 <---------ANAC58 <---------MYB52(1)           <---------ZAT18<---------ANAC58     <---- --------AGL15<---------ANAC58<----------DOF2  ---------->DOF2<---------At4g35610 ------------>CBF---   aaaagaagaattagtagagtgctgctatattcctttggttaagcagtctgaaaggagaagagggtgctcaacacttttcttgtgttcaattttcacttcc  1843200  ------>MYB83  -------->P  ------>MYB46(1) --------->MYB55(1) ---------MYB55(2) ---------MYB111(2) ---------MYB46(2) ---------MYB59                                          --------->YAB1 -------->MYB46(3)                                       <---------ICU4 ---------MYB111(1)       ----------->GT1               <---------ATHB12 --->MYB83                <------MYB83              --------->AHL20(2) --->MYB46(1)             <------MYB46(1)           <---------AHL20(2)                         ------ -->ZmHOX2a(1)    --------->YAB1                --------->AHL20(2)                 --------->WRKY12 -GT1             --------->TOE2(3)            --------->AHL20(2)                  --------->WRKY38(1) -----MYB111(2)  ----------->GT1     --------->ANAC46 <-----------GT1          <---------TOE2(3) -----MYB59     <---------TOE2(3)    XXXXXXXXXXXXXXXXXXXX>MIR776               --------->DAG2  <----- ----->P    --------->TOE2(3)  --------->GLK1(1)<---------AHL20(2)      ----------->GT1       <------   tacctaccaatatttcttaatgttaatttggtgatttctaagtcatctatttattttaatcatcttcatttcatgtgtaaaaaggttgactctcttaaat  1843300                                                                                                    *TSS                                                                                                 <---                                                                                     <xxxxxxxxxxxxxxxsmallRNA(le3)                                                                                     <xxxxxxxxxxxxxxxsmallRNA(fl3)                                                         <xxxxxxxxxxxxxxxxsmallRNA(le3)         <----                                                         ------->TEIL               <xxxxxxxxxxxxxxxxsmallRNA(i)                                                        <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxsmallRNA(si3)                                                       <---------ZAT14              <xxxxxxxxxxxxxxxxsmallRNA(s)                                                       <xxxxxxxxxxxxxxxxsmallRNA(s) <xxxxxxxxxxxxxxxxsmallRNA(fl3)                                                      <---------DEAR3(2)            <xxxxxxxxxxxxxxxxsmallRNA(se3)                                                      <xxxxxxxxxxxxxxxxsmallRNA(s) <xxxxxxxxxxxxxxxxxsmallRNA(se3)                                                     <xxxxxxxxxxxxxxxxsmallRNA(s)  <xxxxxxxxxxxxxxxxxsmallRNA(si3)                                                    <xxxxxxxxxxxxxxxxsmallRNA(s)   <xxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    <---------                                                   <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxsmallRNA(si3)                                                   <xxxxxxxxxxxxxxxxsmallRNA(s)    <xxxxxxxxxxxxxxxxxsmallRNA(le3)                                               <xxxxxxxxxxxxxxxxsmallRNA(i)       <xxxxxxxxxxxxxxxxxxsmallRNA(si3)                                               xxxxxxxxxxxxxxxx>smallRNA(s)       <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                               <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxxsmallRNA(se3)                                               <xxxxxxxxxxxxxxxxsmallRNA(s)      <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                              <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <xxxxxxxxxxxxxxxxsmallRNA(s)                                              <xxxxxxxxxxxxxxxxsmallRNA(s)       <xxxxxxxxxxxxxxxxxsmallRNA(se3)                                              <xxxxxxxxxxxxxxxxsmallRNA(i)       <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                              xxxxxxxxxxxxxxxx>smallRNA(s)       <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                                              xxxxxxxxxxxxxxxx>smallRNA(se3)     <xxxxxxxxxxxxxxxxxsmallRNA(fl3)                                            <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                            <xxxxxxxxxxxxxxxxsmallRNA(s)        --------->ZAT6  <----                                         <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxxxsmallRNA(le3)                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                      <xxxxxxxxxxxxxxxxsmallRNA(s)              <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                      <xxxxxxxxxxxxxxxxsmallRNA(i)              <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                     <------NtERF2 <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxsmallRNA(le3)                                     <xxxxxxxxxxxxxxxxsmallRNA(s)              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                    --------->LBD16<---------ARR14(2)          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                    <xxxxxxxxxxxxxxxxsmallRNA(s)               <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                   <---------LBD16 --------->ARR14(2)          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                  <xxxxxxxxxxxxxxxxsmallRNA(i)                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                  <xxxxxxxxxxxxxxxxsmallRNA(s)               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                  <---------LBD16  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->AtMYB61                                 --------->ZAT2<xxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxsmallRNA(si3)                                 <---------ZAT2<---------LBD16               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                 ------>MYB46(1)  <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                 ------>MYB83<xxxxxxxxxxxxxxxxsmallRNA(s)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                 <xxxxxxxxxxxxxxxxsmallRNA(i)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                 <xxxxxxxxxxxxxxxxsmallRNA(s)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                 <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)       <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                --------->MYB55(1)<xxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                <xxxxxxxxxxxxxxxxsmallRNA(s)                 <xxxxxxxxxxxxxxxxsmallRNA(le3)                                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)          <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                               --------->MYB46(3)<xxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)         <xxxxxxxxxxxxxxxxxsmallRNA(le3)                               <---------ALFIN1<xxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)          <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                               <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)        <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                               <xxxxxxxxxxxxxxxxsmallRNA(i)                 <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                               <xxxxxxxxxxxxxxxxsmallRNA(s)<---------ANAC58 <xxxxxxxxxxxxxxxxxsmallRNA(fl3)                               <---------MYB55(2)<xxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxsmallRNA(s2)                               <-----------RAV1(2)<xxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxxsmallRNA(le3)                              <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       <xxxxxxxxxxxxxxxxxxsmallRNA(le3)                              <xxxxxxxxxxxxxxxxsmallRNA(s) <---------ANAC46 <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)          <xxxxxxxxxxxxxxxxxsmallRNA(se3)                              <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)        <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)           <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                              <---------At4g35610--------->LBD16  <------NtERF2<xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --->ARR11(3)          ====================RAV<xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ----ARR11(3)          <-----------RAV1(1)<xxxxxxxxxxxxxxxxsmallRNA(s)     <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ---CCA1(2)<----------ID1     <xxxxxxxxxxxxxxxxsmallRNA(i) <---------ANAC58<xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   cttttcacttaaaaaaacaaacaaattgttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggttctattctaccactagaccactggtgc  1843400                                           --------->GLK1(2)                                           <---------ARR14(2)                                           ------->TEIL                                           <-----------ARR10                                           --------->ARR14(2)                                        --------->ANAC55(2)                                        <---------ANAC55(2)                                        <---------YAB1                                      <-----------GT1                                   <---------ICU4           <----------DOF2     <-------TEIL                 <---------AHL20(2)     <-----------GT1 ------YAB1                       --------->AHL20(2)    <-----------GT1        ------------------>SPL14 -----ANAC58                    --------->TOE2(3)<---------ZAT6               *TSS --RAV1(1)                  <---------AHL20(2)   ----------->GT1<---------YAB1<---------ANAC58 -----ANAC58               --------->AHL20(2)   <---------TOE1(3)             <---------ANAC58    ---   ttattgattcatctatccgaactaaactattaaatattaattacgaatctagggttatttatctttctgattaagagttttcgtctgtacaagtggaatt  1843500                                                                                           ------>ZmHOX2a(2)                                                                                          <------ZmHOX2a(2)                                                                                          <---------GLK1(1)                                                                                ==================HOX2a_HOX2a                                                                                =================HOX2a_HOX2a                                                                                <------ZmHOX2a(1)   -                                     ------>ZmHOX2a(2)                    <---------HSFB2a(2)       <                                   --------->ARR11(3)                <---------HSFC1(2)  <---------ARR11(3)                                   <---------ARR11(3)                --------->HSFC1(2)  <-----------ARR10                                <---------WOX13(1)                  --------->ANAC58     --------->ARR11(3)                                <--------P                          --------->ANAC58     <---------AGP1                              <---------MYB46(3)                --------->HSFB2a(2)  ---------->DOF2<         --------->At4g35610 --------->ALFIN1         --------->GLK1(2)   --------->HSFB2a(2)       -   ---------->DOF2        --------->DAG2          <------NtERF2 <---------HSFB2a(2)<------NtERF2   -- -------->GT1            ---------->DOF2 <---------LBD16       <---------LBD16  =====================   ttgaaaaaagaagcagagagcgatggagaaagtggttgatctcttcggagtcggagaagctaattcccagaagctactcgaaggaggcaaagatctcagc  1843600         <---------GLK1(2)    ----------->RAV1(1) <------ZmHOX2a(2) --------->CCA1(2)                                                                                 <- -------->AGP1                                                                  <---------AHL20(2)<-- ---------ARR14(2)                                                              --------->AHL20(2)--- ---------ARR11(3)                                                            <----------DOF2     --- -------->ARR14(2)                                               <---------TOE2(2)                <-- ------->GLK1(1)                                                 <---------TOE1(2)              <---- =======HOX2a_HOX2a                             <-----------GT1 <-----------RAV1(2)    --------->LBD16   gagatccaacaggttttcttcgtttctcttctctatctatccgtctaatttcacacttggaatttctcaggttttggagtctttaattccgaaaaatcgt  1843700  <---------MYB46(3) ------GAMYB--------->KAN4(2)            --------->At4g35610         ---------->DOF2 ---------RAV1(1)                  <------ZmHOX2a(2)        --------->ARR14(2) ------>MYB55(2)               <---------TOE1(2)            <---------ARR11(3) ------>MYB52(2)             --------->TOE1(2)              --------->ARR11(3) -------MYB46(3)       <---------KAN4(2) <---------At4g35610<---------GLK1(2)                      <- -----MYB52(1)   <---------LBD16 <------ZmHOX2a(1)          <---------ARR14(2)          <---------CCA1(2)   ttgttggatgagtttattctcagggattgttcataggatcagtagctgaagcgaataacaaggattttctcaaaagctctaatatcactcatgtcttaac  1843800                                                            <------MYB83                                                            <------MYB46(1)                                --------->ARR11(3)    <---------TOE1(3)                              <---------YAB1          <---------TOE2(3)                     ------>ZmHOX2a(1)     ---------->DOF2  <---------ANAC46                  ------>ZmHOX2a(1)      <---------REM1(2) <------MYB46(1)               <---------ATERF1(1)     --------->ETT(2)    <------MYB83        ------>ZmHOX2a(1)   <-----------RAV1(1)     ------>ZmHOX2a(1)    --------->ATHB12              --------->TOE1(3) --------MYB52(1)<---------ALFIN1      <---------ETT(2)  <--------P           --------->TOE2(3)     -   cgttgctgtggccttggctcctccttatcctgatgattttgtctacaaagtcattgaaggttgggttttttttcttcaatccttagcctgtttttgaaat  1843900                                                   ------>ZmHOX2a(2)                                                 <---------ARR14(2)                                                 --------->AGP1                                                 --------->ARR14(2)                                              <---------WOX13(1)                                          <---------WOX13(1)                                          <--------P             <---------AHL20(2)         <---------MYB46(3)            --------->AHL20(2)         <---------AtMYB61        <-----------GT1          --------->ARR11(3)         <---------ANAC46          ----------->HVH21          <---------ARR11(3)       <---------ZAT14--------->CCA1(2)                <---------ZAT6 <---------ANAC46                  --------->ZAT14<------ZmHOX2a(2)   <---------ARR11(3) --------->ID1                     --------->REM1(2) --------->LBD16  <---------AHL20(1)     <-------TEIL   ttttcgtttagagattttataaacttgttcttcatcgtgtagtggttgatagatccgagaccgatttgacagtatatttcgatgagtgttatagcttcat  1844000  Previous    Next  AGI:  At3g06100.1    Description:  NIP7;1/NLM6/NLM8 (NOD26-like intrinsic protein 7;1); water channel. Identical to Probable aquaporin NIP7-1 (NIP7-1) [Arabidopsis Thaliana] (GB:Q8LAI1;GB:A0MEU4;GB:Q1PES9;GB:Q9M8K8); similar to NIP4,1/NLM4 (NOD26-LIKE INTRINSIC PROTEIN 4,1), water channel [Arabidopsis thaliana] (TAIR:AT5G37810.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71103.1); contains InterPro domain Major intrinsic protein; (InterPro:IPR000425) Range:  from: 1841177    to: 1843099    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g06105.1    Description:  pre-tRNA. tRNA-Gly (anticodon: GCC) Range:  from: 1843330    to: 1843400    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g06110.1    Description:  MKP2; protein tyrosine/serine/threonine phosphatase. similar to dual specificity protein phosphatase (DsPTP1) [Arabidopsis thaliana] (TAIR:AT3G23610.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO71100.1); contains InterPro domain Protein-tyrosine phosphatase, dual specificity; (InterPro:IPR000340); contains InterPro domain Protein-tyrosine phosphatase; (InterPro:IPR000387) Range:  from: 1843478    to: 1844781    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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