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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                          ----------->GT1
                                          --------->YAB1
                                    --------->TOE2(3)
                                   --------->ANAC46
                                   <---------ANAC55(2)
                                   --------->ANAC55(2)
                                 <-----------GT1                             <---------ZAT2
      --------->YAB1           --------->CCA1(2)                             <---------At4g35610
   <----------DOF2XXXXXXXXXXXXXXXXXXXX>MIR167A/B                             --------->ZAT2    <----
---------RAP2.6(2)--------->At4g35610    <---------ATHB12          <---------YAB1       --------->LBD16
----->DOF2        <---------At4g35610  --------->WOX13(1)     <------ZmHOX2a(1)   ------>ZmHOX2a(1)
->ANAC58       ---------->DOF2<---------ARR11(3)      <---------ARR11(3)     --------->At4g35610
->ANAC58 --------->YAB1       --------->ARR11(3)      --------->ARR11(3)<-----------GT1 --------->At5g28300
 
aagcggctttaatcacattgaagctcccaacaagatttacgtcaatcgtgaatttgacatcttcaggactatgtttcaccagctccttcgccgtaaacac  1829800
                        <---------DEAR3(2)                                               ------>NtERF2
              <---------ALFIN1                                                          <---------RAP2.6(2)
          <---------ATHB12                                                 <---------ZAT14
         --------->ANAC58                                                  <---------At4g35610
         --------->ANAC58                                                  --------->At4g35610    --
        --------->WOX13(1)                                --------->YAB1   --------->ZAT14       ---
 <---------MYB46(3)    ------>ZmHOX2a(2)        --------->HSFB2a(2)  --------->SPL7  --------->ALFIN1
-----ALFIN1--------->YAB1        <-------TEIL   <---------HSFB2a(2)  ------->TEIL --------->GLK1(2)
 
accttggttaacaatcaacacatcgatcggtcccgattcatctatcgccttcgagactgcatcgtaatcgcgaacgtctgcagagaatgtggcgacttcg  1829900
                                                                                             <------
                                                                                          <---------ANAC46
                                                                                         --------->ALFIN1
                                                                                         <------NtERF2
                                                  ===============HOX2a_HOX2a           <---------ANAC46
                                                 <------ZmHOX2a(2)                     --------->DEAR3(1)
                                                --------->ARR14(2)                    <------NtERF2
                                                <---------ARR14(2)                    --------->ATERF1(1)
                                              --------->LBD16                        <---------RAP2.3(1)
                                            =====================HOX2a_HOX2a         <---------DEAR4(2)
         <---------At4g35610                <---------LBD16                         <---------DEAR3(1)
         --------->At4g35610                ------>ZmHOX2a(2)                       <---------RAP2.3(2)
         --------->ZAT2                 ----------->ARR10                          --------->ATERF1(1)
         <---------ZAT2         ========================HOX2a_HOX2a                --------->At4g35610
      <---------ANAC46          ------>ZmHOX2a(1)================HOX2a_HOX2a       <---------At4g35610
      <---------ANAC58          --------->HSFB2a(2)                          <---------LBD16--------
      <---------ANAC58          =========================HOX2a_HOX2a       --------->RAP2.3(3)
   --------->ALFIN1             ===================HOX2a_HOX2a           --------->ZAT18 <---------DEAR3(1)
---->NtERF2     ------>ZmHOX2a(2)     <----------DOF2     <------ZmHOX2a(1)--------->DEAR3(1)<------
------>ANAC46   =======================HOX2a_HOX2a------>ZmHOX2a(2)      <---------ZAT18------>NtERF2
 
acaccagtggcgagctggatcgatttcttagcctcctcgagctttgatccggatcgggcgaggattgagacacgagcgccctcggaagcggcgcggtggg  1830000
                                                   --------->ATHB12
                                           <---------TGA1a
                                           --------->TGA1a
                                           --------->bZIP60(1)
                                           <---------bZIP60(1)
                                           <---------bZIP60(2)
                                           <---------O2
                                           <---------ANAC55(2)
                                           <---------ANAC58                --------------->AtSPL3
                        --------->MYB52(1) <---------ANAC46                <---------------AtSPL8
                       <---------ALFIN1    --------->ANAC55(2)            <------ZmHOX2a(1)
                      --------->MYB46(3)   <---------ANAC58           <---------TOE2(1)
                     <------ZmHOX2a(2)   --------->MYB52(1)           <---------TOE1(1)
                    --------->AGP1      ----------->HVH21   ------>ZmHOX2a(2)
                    <---------ARR14(2)  --------->ALFIN1    =====================HOX2a_HOX2a
                    --------->ARR14(2)  ----------->TGA1   ======================HOX2a_HOX2a
                    <---------ARR11(3) <-----------HVH21   <------ZmHOX2a(2)
                <---------MYB52(1)    <---------ANAC46    --------->ARR11(3)
         <---------At4g35610          <---------ANAC58    <---------ARR11(3)
---MYB46(3)    ------>NtERF2          <---------ANAC58    <---------ARR14(2)   <-------TEIL <-------
->ALFIN1 --------->At4g35610    <---------REM1(1) ----------->HVH21<----------ID1   <---------ICU4
---DEAR3(1) ------>NtERF2  --------->LBD16 --------->O2   --------->ARR14(2) <---------SPL7 <-------
 
cgagagcaagaccgatgccgctagatccaccggtgatgaaggcgtgacgggacttgatagggatcttaatgggacgaggacgtacaattagggctaagat  1830100
                                                                    <---------ANAC55(2)
                                                                    --------->O2
                                                                    <---------O2
                                                                    --------->ANAC55(2)
                                                                  ------>ZmHOX2a(2)
                                                                 <---------GLK1(1)
                                                                <---------AGP1
                                                                ------->TEIL
                                                                --------->ARR14(2)
                                                                <---------ARR11(3)
                                                          <------NtERF2
                                                         <---------RAP2.6(3)
                                                         <------NtERF2----------->HVH21
                                                         ------>NtERF2----------->TGA1
                                                        <---------ATERF1(2)
                                                        --------->ATERF1(2)
                                                        --------->ANAC58
                                                        --------->ANAC58                      <-----
                                                        --------->ANAC46                      <-----
                                                        --------->RAP2.6(2)                   ------
                                                        --------->DEAR3(1)    --------->ARR11(3)   <
                                                       <---------RAP2.6(2)  ------->TEIL<---------ANAC46
                             <------ZmHOX2a(1)===========================HOX2a_HOX2a <---------DEAR3(1)
--TOE2(3)                  <---------TOE2(3)  <------ZmHOX2a(1) <---------ARR14(2)  <------NtERF2  <
--YAB1                   --------->ICU4      ----------->GT1    --------->ARR11(3)<---------DEAR3(1)
 
agcgagaagcgatagtgggataatgggaatgaggaagagaaggaagagaggagaaatggccgccatggatctcgtgacgaagctctcggcgatgtgaagc  1830200
     *TSS  <------------CBF
   <---------ZAT2                                                  --------->ATHB12
   --------->At4g35610                                             <---------ICU4
   <---------At4g35610                                            <---------YAB1
<---------MYB52(1)                                                --------->ICU4
----ZAT2  --------->ATHB12                                   <----------DOF2     --------->DEAR3(2)
----At4g35610                                        <---------ATHB12           ------->TEIL
--->At4g35610                    <---------YAB1<-----------GT1    <---------ATHB12
-----------TGA1               --------->ARR14(2)   --------->WOX13(1)        ----------->HVH21
-----------HVH21              <---------ARR14(2) ------------>CBF<---------TOE2(3)--------->DEAR3(1)
 
tccgtcagctcattcattggagaaataaaaacaaatacgattagaccagttaaccaattactcggtttaatgatttctatctgaaccggccgttttagtt  1830300
                        --------->AHL20(2)
                        <---------ICU4
                        <---------AHL20(2)
                        <--------ATHB1
                        --------->YAB1
                        <---------AHL20(1)
                       <---------YAB1
                     --------->YAB1
                    <---------AHL20(2)
                --------->AHL20(2)                                               ----------->GT1
         --------->AHL20(2)                                                      <---------ANAC46
         <---------AHL20(2)                                                   <---------bZIP60(1)
        <---------AHL20(1)                                                    --------->bZIP60(1) --
        --------->AHL20(2)        <---------ANAC58                          --------->YAB1     -----
        --------->AHL20(1)        <---------ANAC58                          <---------ICU4     -----
        <---------AHL20(2)        <---------ANAC46                         --------->ICU4     <-----
   --------->At5g28300 --------->ICU4       <---------MYB52(1)             <---------ATHB12  -------
  <----------DOF2  --------->AHL20(2)      <-------GAMYB                  <---------TOE2(3) --------
 
tctcgctgtaatttattttttatataataattttgtgacttgttgtcgttgtgtttcaaaattggtttctattttctaatgatgtcgttaaaaaacaact  1830400
        <---------DAG2
     <-----------GT1                                                                          <-----
  --------->YAB1                                                                             -------
------->ZAT6                                                                                --------
-->GAMYB--------->TOE2(3)                              --------->CCA1(2)            ----------->GT1
------>HVH21                                      ---------->DOF2               <---------AHL20(2)
----MYB52(2)                                    <---------YAB1              <---------ZAT6 <--------
-->At4g35610     <---------REM1(1)          <---------AHL20(2)            ----------->GT1  ---------
->MYB52(1)    <-----------RAV1(1)           --------->AHL20(2)----------->GT1 <---------YAB1<-------
 
gacactaatcaccttatttgttgtagttgatttagactaatacacatttttatgaaagagatgaatagaaaattgtatagtattattttgtgaaattatt  1830500
                                            <---------ANAC55(2)
                                            <---------ANAC46
                                            <---------ANAC58
                                            <---------ANAC58
                                      ----------->HVH21
                                    --------->TGA1a
                                    <---------ANAC58
                                    --------->ANAC55(2)
                                    <---------ANAC55(2)
                                    <---------ANAC58
                                    <---------ANAC46
                                    <---------ANAC55(1)
                                    --------->O2                                             -------
       ----------->HVH21            <---------O2----------->HVH21                 --------->LBD16
     <---------At4g35610            <---------TGA1a                              <---------ANAC55(2)
----YAB1                            <---------bZIP60(1)                          --------->ANAC55(2)
-->AHL20(1)                         <---------bZIP60(2)           <---------GLK1(2)     ----------->GT1
->AHL20(2)                          --------->bZIP60(1)       ---------->DOF2    --------->ANAC46
-AHL20(2)                           =====================================bZIP_DOF<---------ANAC58
>ICU4--------->At4g35610          <-----------GT1     ----------->GT1            <---------ANAC58
--AHL20(2)                      <-----------HVH21     <---------ZAT6            <---------LBD16  <--
 
ttagtttcttctgacatttgtttcacaagagaacatgttacgtgactacgtgtgatagagttaaaaaaagattgtgttcgtattgcgcaacttgtaataa  1830600
                                   <---------ZAT6
                               <--------P                                    ----------->HVH21
                               <---------MYB52(1)                   <-------TEIL
                             --------->MYB55(2)                    --------->CCA1(2)
      ----------->GT1        <------MYB46(1)                      --------->ARR11(3)
--------->ARR11(3)           <------MYB83                       <---------TOE2(3)
<---------ARR11(3)           <---------MYB46(3)              --------->AHL20(2)
-->ICU4      <---------ICU4  ----------->GT1       --------->AHL20(2)  <---------At4g35610     <----
----ZmHOX2a(1) <----------DOF2<-------GAMYB ----------->HVH21<---------AHL20(2)           <-------TEIL
 
ggagatgttgagttaatactttcacatatgggtggttagtcttatatgtgacatttaaaactaatttaagatacagctagttgacagaaaacatacagct  1830700
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AGI:  At3g06060.1   
Description:  short-chain dehydrogenase/reductase (SDR) family protein. similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT5G19200.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71113.1); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040)
Range:  from: 1827986    to: 1830206    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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