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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
----------->
GT1
--------->
YAB1
--------->
TOE2(3)
--------->
ANAC46
<---------
ANAC55(2)
--------->
ANAC55(2)
<-----------
GT1
<---------
ZAT2
--------->
YAB1
--------->
CCA1(2)
<---------
At4g35610
<----------
DOF2
XXXXXXXXXXXXXXXXXXXX>
MIR167A/B
--------->
ZAT2
<----
---------
RAP2.6(2)
--------->
At4g35610
<---------
ATHB12
<---------
YAB1
--------->
LBD16
----->
DOF2
<---------
At4g35610
--------->
WOX13(1)
<------
ZmHOX2a(1)
------>
ZmHOX2a(1)
->
ANAC58
---------->
DOF2
<---------
ARR11(3)
<---------
ARR11(3)
--------->
At4g35610
->
ANAC58
--------->
YAB1
--------->
ARR11(3)
--------->
ARR11(3)
<-----------
GT1
--------->
At5g28300
aagcggctttaatcacattgaagctcccaacaagatttacgtcaatcgtgaatttgacatcttcaggactatgtttcaccagctccttcgccgtaaacac
1829800
<---------
DEAR3(2)
------>
NtERF2
<---------
ALFIN1
<---------
RAP2.6(2)
<---------
ATHB12
<---------
ZAT14
--------->
ANAC58
<---------
At4g35610
--------->
ANAC58
--------->
At4g35610
--
--------->
WOX13(1)
--------->
YAB1
--------->
ZAT14
---
<---------
MYB46(3)
------>
ZmHOX2a(2)
--------->
HSFB2a(2)
--------->
SPL7
--------->
ALFIN1
-----
ALFIN1
--------->
YAB1
<-------
TEIL
<---------
HSFB2a(2)
------->
TEIL
--------->
GLK1(2)
accttggttaacaatcaacacatcgatcggtcccgattcatctatcgccttcgagactgcatcgtaatcgcgaacgtctgcagagaatgtggcgacttcg
1829900
<------
<---------
ANAC46
--------->
ALFIN1
<------
NtERF2
===============
HOX2a_HOX2a
<---------
ANAC46
<------
ZmHOX2a(2)
--------->
DEAR3(1)
--------->
ARR14(2)
<------
NtERF2
<---------
ARR14(2)
--------->
ATERF1(1)
--------->
LBD16
<---------
RAP2.3(1)
=====================
HOX2a_HOX2a
<---------
DEAR4(2)
<---------
At4g35610
<---------
LBD16
<---------
DEAR3(1)
--------->
At4g35610
------>
ZmHOX2a(2)
<---------
RAP2.3(2)
--------->
ZAT2
----------->
ARR10
--------->
ATERF1(1)
<---------
ZAT2
========================
HOX2a_HOX2a
--------->
At4g35610
<---------
ANAC46
------>
ZmHOX2a(1)
================
HOX2a_HOX2a
<---------
At4g35610
<---------
ANAC58
--------->
HSFB2a(2)
<---------
LBD16
--------
<---------
ANAC58
=========================
HOX2a_HOX2a
--------->
RAP2.3(3)
--------->
ALFIN1
===================
HOX2a_HOX2a
--------->
ZAT18
<---------
DEAR3(1)
---->
NtERF2
------>
ZmHOX2a(2)
<----------
DOF2
<------
ZmHOX2a(1)
--------->
DEAR3(1)
<------
------>
ANAC46
=======================
HOX2a_HOX2a
------>
ZmHOX2a(2)
<---------
ZAT18
------>
NtERF2
acaccagtggcgagctggatcgatttcttagcctcctcgagctttgatccggatcgggcgaggattgagacacgagcgccctcggaagcggcgcggtggg
1830000
--------->
ATHB12
<---------
TGA1a
--------->
TGA1a
--------->
bZIP60(1)
<---------
bZIP60(1)
<---------
bZIP60(2)
<---------
O2
<---------
ANAC55(2)
<---------
ANAC58
--------------->
AtSPL3
--------->
MYB52(1)
<---------
ANAC46
<---------------
AtSPL8
<---------
ALFIN1
--------->
ANAC55(2)
<------
ZmHOX2a(1)
--------->
MYB46(3)
<---------
ANAC58
<---------
TOE2(1)
<------
ZmHOX2a(2)
--------->
MYB52(1)
<---------
TOE1(1)
--------->
AGP1
----------->
HVH21
------>
ZmHOX2a(2)
<---------
ARR14(2)
--------->
ALFIN1
=====================
HOX2a_HOX2a
--------->
ARR14(2)
----------->
TGA1
======================
HOX2a_HOX2a
<---------
ARR11(3)
<-----------
HVH21
<------
ZmHOX2a(2)
<---------
MYB52(1)
<---------
ANAC46
--------->
ARR11(3)
<---------
At4g35610
<---------
ANAC58
<---------
ARR11(3)
---
MYB46(3)
------>
NtERF2
<---------
ANAC58
<---------
ARR14(2)
<-------
TEIL
<-------
->
ALFIN1
--------->
At4g35610
<---------
REM1(1)
----------->
HVH21
<----------
ID1
<---------
ICU4
---
DEAR3(1)
------>
NtERF2
--------->
LBD16
--------->
O2
--------->
ARR14(2)
<---------
SPL7
<-------
cgagagcaagaccgatgccgctagatccaccggtgatgaaggcgtgacgggacttgatagggatcttaatgggacgaggacgtacaattagggctaagat
1830100
<---------
ANAC55(2)
--------->
O2
<---------
O2
--------->
ANAC55(2)
------>
ZmHOX2a(2)
<---------
GLK1(1)
<---------
AGP1
------->
TEIL
--------->
ARR14(2)
<---------
ARR11(3)
<------
NtERF2
<---------
RAP2.6(3)
<------
NtERF2
----------->
HVH21
------>
NtERF2
----------->
TGA1
<---------
ATERF1(2)
--------->
ATERF1(2)
--------->
ANAC58
--------->
ANAC58
<-----
--------->
ANAC46
<-----
--------->
RAP2.6(2)
------
--------->
DEAR3(1)
--------->
ARR11(3)
<
<---------
RAP2.6(2)
------->
TEIL
<---------
ANAC46
<------
ZmHOX2a(1)
===========================
HOX2a_HOX2a
<---------
DEAR3(1)
--
TOE2(3)
<---------
TOE2(3)
<------
ZmHOX2a(1)
<---------
ARR14(2)
<------
NtERF2
<
--
YAB1
--------->
ICU4
----------->
GT1
--------->
ARR11(3)
<---------
DEAR3(1)
agcgagaagcgatagtgggataatgggaatgaggaagagaaggaagagaggagaaatggccgccat
ggatctcgtgacgaagctctcggcgatgtgaagc
1830200
*
TSS
<------------
CBF
<---------
ZAT2
--------->
ATHB12
--------->
At4g35610
<---------
ICU4
<---------
At4g35610
<---------
YAB1
<---------
MYB52(1)
--------->
ICU4
----
ZAT2
--------->
ATHB12
<----------
DOF2
--------->
DEAR3(2)
----
At4g35610
<---------
ATHB12
------->
TEIL
--->
At4g35610
<---------
YAB1
<-----------
GT1
<---------
ATHB12
-----------
TGA1
--------->
ARR14(2)
--------->
WOX13(1)
----------->
HVH21
-----------
HVH21
<---------
ARR14(2)
------------>
CBF
<---------
TOE2(3)
--------->
DEAR3(1)
tccgtc
agctcattcattggagaaataaaaacaaatacgattagaccagttaaccaattactcggtttaatgatttctatctgaaccggccgttttagtt
1830300
--------->
AHL20(2)
<---------
ICU4
<---------
AHL20(2)
<--------
ATHB1
--------->
YAB1
<---------
AHL20(1)
<---------
YAB1
--------->
YAB1
<---------
AHL20(2)
--------->
AHL20(2)
----------->
GT1
--------->
AHL20(2)
<---------
ANAC46
<---------
AHL20(2)
<---------
bZIP60(1)
<---------
AHL20(1)
--------->
bZIP60(1)
--
--------->
AHL20(2)
<---------
ANAC58
--------->
YAB1
-----
--------->
AHL20(1)
<---------
ANAC58
<---------
ICU4
-----
<---------
AHL20(2)
<---------
ANAC46
--------->
ICU4
<-----
--------->
At5g28300
--------->
ICU4
<---------
MYB52(1)
<---------
ATHB12
-------
<----------
DOF2
--------->
AHL20(2)
<-------
GAMYB
<---------
TOE2(3)
--------
tctcgctgtaatttattttttatataataattttgtgacttgttgtcgttgtgtttcaaaattggtttctattttctaatgatgtcgttaaaaaacaact
1830400
<---------
DAG2
<-----------
GT1
<-----
--------->
YAB1
-------
------->
ZAT6
--------
-->
GAMYB
--------->
TOE2(3)
--------->
CCA1(2)
----------->
GT1
------>
HVH21
---------->
DOF2
<---------
AHL20(2)
----
MYB52(2)
<---------
YAB1
<---------
ZAT6
<--------
-->
At4g35610
<---------
REM1(1)
<---------
AHL20(2)
----------->
GT1
---------
->
MYB52(1)
<-----------
RAV1(1)
--------->
AHL20(2)
----------->
GT1
<---------
YAB1
<-------
gacactaatcaccttatttgttgtagttgatttagactaatacacatttttatgaaagagatgaatagaaaattgtatagtattattttgtgaaattatt
1830500
<---------
ANAC55(2)
<---------
ANAC46
<---------
ANAC58
<---------
ANAC58
----------->
HVH21
--------->
TGA1a
<---------
ANAC58
--------->
ANAC55(2)
<---------
ANAC55(2)
<---------
ANAC58
<---------
ANAC46
<---------
ANAC55(1)
--------->
O2
-------
----------->
HVH21
<---------
O2
----------->
HVH21
--------->
LBD16
<---------
At4g35610
<---------
TGA1a
<---------
ANAC55(2)
----
YAB1
<---------
bZIP60(1)
--------->
ANAC55(2)
-->
AHL20(1)
<---------
bZIP60(2)
<---------
GLK1(2)
----------->
GT1
->
AHL20(2)
--------->
bZIP60(1)
---------->
DOF2
--------->
ANAC46
-
AHL20(2)
=====================================
bZIP_DOF
<---------
ANAC58
>
ICU4
--------->
At4g35610
<-----------
GT1
----------->
GT1
<---------
ANAC58
--
AHL20(2)
<-----------
HVH21
<---------
ZAT6
<---------
LBD16
<--
ttagtttcttctgacatttgtttcacaagagaacatgttacgtgactacgtgtgatagagttaaaaaaagattgtgttcgtattgcgcaacttgtaataa
1830600
<---------
ZAT6
<--------
P
----------->
HVH21
<---------
MYB52(1)
<-------
TEIL
--------->
MYB55(2)
--------->
CCA1(2)
----------->
GT1
<------
MYB46(1)
--------->
ARR11(3)
--------->
ARR11(3)
<------
MYB83
<---------
TOE2(3)
<---------
ARR11(3)
<---------
MYB46(3)
--------->
AHL20(2)
-->
ICU4
<---------
ICU4
----------->
GT1
--------->
AHL20(2)
<---------
At4g35610
<----
----
ZmHOX2a(1)
<----------
DOF2
<-------
GAMYB
----------->
HVH21
<---------
AHL20(2)
<-------
TEIL
ggagatgttgagttaatactttcacatatgggtggttagtcttatatgtgacatttaaaactaatttaagatacagctagttgacagaaaacatacagct
1830700
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AGI:
At3g06060.1
Description:
short-chain dehydrogenase/reductase (SDR) family protein. similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT5G19200.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71113.1); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040)
Range:
from: 1827986
to: 1830206
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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