Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                 <-----                                                                                            <--------                                 --------->MYB52(1)                                   <---------AHL20(2)            --------->ZAT6   <---------TOE2(3)   --------->DAG2      ----------->RAV1(2) --------->ICU4         <----------DOF2     <---------YAB1    ---------->DOF2     <-----------GT1  <---------ANAC55(2) -------->AHL20(2)     <-------TEIL       ----------->GT1 --------->LBD16           --------->ANAC55(2)   cataaaataaactttcactagaaaatgcattaagataactgaaaatgtgaaaaggtaacccagaaaattttacctggttttgtagtatgtaattcttttg  1652900                                                                                   <-----------GT1                            <---------ICU4                                      ----------->GT1                        <---------AHL20(2)                               --------------->AGL15                        --------->AHL20(2)                               <---------------AGL15                     <---------ICU4            <---------At4g35610      <-----------------AGL3                     <---------AHL20(2)        --------->At4g35610      ----------------->AGL3                    --------->AHL20(2)         ----------->RAV1(2)      ----------------->AGL2                 <---------AHL20(2) <---------MYB52(1)                 ----------->GT1   <----------DOF2--------->YAB1   <---------RAP2.6(3)                 --------->At4g35610 ----AtMYB61    --------->AHL20(2) <-------GAMYB                   <---------ARR11(3)      <---------ICU4 --DOF2         <---------AHL20(2)<---------MYB46(3)          <---------ATHB12  --------->YAB1   gtcttctttattagtttttttaataaatatttatggccgttacattttcatctgaaacattcaaatcaacatctgctaaaaatagtaacttcataatcgt  1653000                        --------->AHL20(2)                     <---------AHL20(2)                    --------->AHL20(2)                   <---------At4g35610     <---------WRKY18(1)                  --------->TOE2(3)                    --------->SPL7       --------->ANAC58                 <--------HAHB4    --------->LBD16   <-----------HVH21     --------->SPL7                 <---------ICU4    <---------LBD16   <---------SPL7        <---------ZAT18                --------->ICU4 --------->ARR11(3)   ------->GAMYB        <---------SPL7                <---------YAB1--------->CCA1(1)    --------->MYB46(3)  --------->ANAC55(2)              --------->YAB1  --------->RVE1(1)   <---------At5g28300  <---------ANAC55(2)         --             <-------TEIL --------->AHL20(2)<---------GLK1(2)        --------->MYB52(1)        <-----         <---------ATHB12--------->YAB1 <------ZmHOX2a(2)--------->At4g35610--------->ANAC58   ------  <-----------GT1--------->ATHB12 <---------LBD16<-----------GT1  <---------ICU4----------->HVH21 <--   tttatttcccactgattcatcattaaataaaaatatccagggatcagattataaccgtccgatgcaaaacattacggtacgcttgaccacagagcatagc  1653100            --------->ANAC58            --------->ANAC46            <---------ANAC55(2)            --------->ANAC55(2)            --------->ANAC55(1)            --------->ANAC58     <-------PIF5     ------->PIF4     ------->PIF5     <-------PIF4     ------->MYC2     <-------MYC2     <-------MYC4     ------->MYC4     <-------MYC3     ------->MYC3    --------->ANAC55(2)                                            ----------->RAV1(1)    <---------ANAC55(2)                                           --------->AtMYB61    =======================================bZIP_DOF              --------->MYB46(3)    =======================================bZIP_DOF            ------->GAMYB    <---------ANAC58                                          <---------MYB111(1)    <---------O2                                              <---------MYB55(2)    --------->TGA1a                                           <---------MYB111(2)    <---------ANAC58           <---------AHL20(2)             <---------MYB52(2)    --------->O2         ------>MYB83                         <---------MYB46(2)    <---------TGA1a    <---------MYB59                 --------->At4g35610   ------------>OsbHLH66 ------>MYB46(1)               --------->ZAT2 --------------------->TaNAC69(2)                      <---------At4g35610         ----------->GT1 ----At4g35610    --------->YAB1---------->DOF2        <---------ZAT2  ---------->DOF2 --->At4g35610   <---------ATHB12                ---------->DOF2-------->P   <-----------HVH21<------ ---------HVH21--------->WOX13(1)        ---------->DOF2      --------->MYB46(3) <---------ANAC46   tgtctcacgtgctcacgcaatcataccaaatattaaaagtcaaaaaagcccaatagcagctgcaactaccaccagaagcggtcgagggtaatatagtcat  1653200                         --------->ANAC46                     <---------ALFIN1                  --------->ANAC46                              <-----------------AGL3                 ------>MYB83                                   ------------>CBF               --------->DEAR3(1)                               ==================================MADS_MADS               <---------ALFIN1                           <---------DAG2               --------->AtMYB61                        --------->ARR11(3)              <---------At4g35610                       <---------ARR11(3)              --------->At4g35610                      --------->RVE1(1)            <-----------GT1                            --------->CCA1(1)        <---------ARR11(3)  --------->ARR14(2)         <-----------GT1   ---------->ID1     --------->DAG2 <---------ALFIN1              --------->YAB1----------------->AGL3    ---------->DOF2--------->MYB46(3)            <---------ATHB12     *TSS                   -------- --------->ANAC46------>MYB46(1)               ------>MYB83<----------DOF2        <---------------AGL15 ---ICU4--------->ARR11(3)  <---------ARR14(2) ------>MYB46(1)  --------->LBD16   --------------->AGL15   tacacaaaaagttctcacctccccaacgcgtagcctcttaactaaaaccaaatcaaaatacctttccccaattttggctcattaccaaaaaaaaaaaaaa  1653300                                                                                                 <---                                  <------ZmHOX2a(1)                                            ------                          <------NtERF2                                                       <------                         --------->LBD16                                                   <---------HSFC1(2)                        <---------ANAC46                                                  <---------TOE1(2)                        <---------DEAR3(1)                                   ---------->ID1--------->HSFC1(2)                        --------->ALFIN1                                   <---------ANAC58--------->HSFB2a(1)                       <---------LBD16 <---------YAB1             <---------YAB1          <---------TOE2(2)                     --------->DAG2 <------ZmHOX2a(2)           --------->YAB1        <---------At4g35610 ----------->GT1    ---------->DOF2--------->ARR11(3)   ----------->GT1    <---------ANAC46<---------HSFB2a(1) ->AHL20(2) ----------->GT1   ---------->DOF2          <---------ZAT6      <---------ANAC58<---------MYB46(3)   tagttgtaaatagagagaaaaataaggcggggaaaaggatcacgattcacaaaattagtggaaaaatcataagtgtttcgtcttcttcatcggaggttcg  1653400                                                                            <---------YAB1                                                                           <---------AHL20(2)                                                            <---------AHL20(2)    <---------ANAC58                                                            --------->AHL20(2)    <---------ANAC46                                                           <---------AHL20(2)     <---------ANAC58                                                           --------->AHL20(2)   <-----------GT1                                                      --------->At5g28300  <---------AHL20(1)                                                     ----------->GT1     <---------YAB1     <-----------GT1                               <---------At4g35610 --------->YAB1        <------- ------MYB52(1)                            <---------YAB1  <---------AHL20(1) <---------AHL20(2) <--- --->MYB52(2)                         ------->TEIL --------->At4g35610 <--------HAHB4        <------- -TEIL  <---------YAB1           <---------ANAC46<------ZmHOX2a(1)    <---------YAB1      <----------   ttttttttttctaattgttcttctctctcgttcttctgtgtatgtattataggagctgtaatttaattttgtattattattttttcgtgttttgactttt  1653500                                             <---------------AGL15                                             --------------->AGL15      --------->YAB1                                            =========================================MADS_MADS                                 <---------LBD16                       <---------YAB1  <---------AHL20(2)                                 --------->LBD16                     --------------->AGL15                                --------->HSFB2a(2)                  <---------------AGL15                 <---------AHL20(2)         <-----------------AGL3  ----------------->AGL3                 --------->AHL20(2)         <-----------------AG    <-----------------AGL2    <-----------GT1  <---------AHL20(2)     <-----------------AGL2  <-----------------AGL3 --------->ZAT6  <-----------GT1<---------AHL20(1)      --------->GLK1(1)    <---------YAB1           --------->AHL20(2) --DAG2       --------->TOE2(3) <-----------RAV1(2)       <---------ARR11(3)    ------>ZmHOX2a(2) ------AHL20(2) --------->AHL20(2)       <---------GLK1(1)--------->ARR11(3)  <---------ARR14(2) ---DOF2    <---------YAB1      <---------LBD16           <---------GLK1(2)   --------->ARR14(2) -GT1    <----------DOF2        <---------HSFB2a(2)     ----------->ARR10    <------ZmHOX2a(1)   tatttttctctcttttcattaaatttatgtgtttccaggggtgatttctgcatttggatagattttgatttctattataggatcggaatttaaacactag  1653600                                                                                        <---------ANAC58                                                                                        <---------ANAC58                                                                                   --------->ATHB12                                                                                <---------ANAC58                                                                           <---------ANAC58                                                                           --------->ANAC55(2)                                                                           <---------ANAC55(1)                                                              <---------YAB1    <---------ANAC58           --------->ICU4  <---------GLK1(2)             <----------DOF2   <---------ANAC58      ----------->GT1--------->ZAT6    --------->ETT(1) <---------DAG2     <---------ANAC55(2)   catttaagtagtaattttgggtaactgtagaatttctatggtcggaatcaaatcgataccttttctgattttcaattacgtttcttgatttcttgtttgt  1653700                      --------->ZAT14                   <---------ANAC58                   <---------ANAC58                 ------>ZmHOX2a(2)                --------->GLK1(1)               <---------AGP1               <---------ARR14(2)               <-----------ARR10               --------->ARR14(3)               <---------ARR11(3)               --------->ARR11(3)                                <------MYB46(1)               <---------ARR14(3)                  --------->GLK1(1)                                <               --------->ARR14(2)                  <---------GLK1(1)                                <              <---------CCA1(2)                 <---------TOE2(3)<------MYB83                       -      --------->ATHB12--------->ZAT18    <---------TOE1(3)      --------->MYB59                     -     ----------->ARR10<---------ZAT14    <---------TOE2(3)  --------->ATHB12                  -------    <--------P<---------At4g35610<---------HSFB2a(2)   <---------HSFB2a(2)            <---------HSFB2a(2)   <-------GAMYB<------ZmHOX2a(2)--------->HSFB2a(2)  <---------LBD16                 --------->HSFB2a(2)   ttttgggttgatttgcagatctcgtgctctgaattcgagaattgaggtttgagatttctgggtgatttggtctaggctatataagtttttagaacaagac  1653800  Previous    Next  AGI:  At3g05670.1    Description:  PHD finger family protein. similar to PHD finger family protein [Arabidopsis thaliana] (TAIR:AT4G10940.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17474.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 1653270    to: 1657165    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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