Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                           --------->ANAC58          <-----------------AGL1                                             -------->ATHB1         --------->PCF2                                                      --------->ATHB12       ----------->HVH21                                                     <---------ICU4      <-----------HVH21                                                      <------------ATHB5 <---------ZAT14                                                             --------->YAB1 --------->ZAT14                                                            <---------ATHB12 ---->KAN4(2)                                                               --------->ICU4 ----KAN4(1)                                                                <---------YAB1 --->HSFC1(2)                                       <---------AHL20(2)    --------->WOX13(1) --->HSFB2a(1)       --------------------->WRI1     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)--------->ANAC46 ----HSFC1(2)     ------->GAMYB                   <---------------AGL15   --------->YAB1 --------->ANAC58 ----HSFB2a(1)   --------->ANAC46                 --------->TOE2(3)      --------->MYB46(3) --->KAN4(1)    --------->RAP2.6(3)               <----------DOF2      ----------->RAV1(1)         <- ---KAN4(2)    --------->MYB52(1)     <---------ANAC58           <---------O2<--------ATHB1   ------- -----AtSPL8--------->ANAC46          <---------ANAC58           --------->O2--------->ATHB51 <------   ttcttcactgtgacccacaacggcattgttttaatctctggctgggcttcttctttaatcggagaccacttggcaacaatcattggtaaaccagcaatgt  1560200                                      ----------->HVH21                                     <-----------HVH21                                   <------NtERF2                                 <---------ANAC46                                 <---------ANAC58                                 <---------ANAC58                                <---------LBD16                                <------NtERF2                              <---------DEAR3(1)                              ----------->HVH21       <---------ZAT14                              --------->ALFIN1       <----------DOF2                            >>>>>>>>CAMTA3  --------->ARR14(2)                                  <----                            <---------ANAC58<---------GLK1(2)                              <---------ICU4          <---------At4g35610<-------MYC3--------->ANAC55(2)                              <---------YAB1          --------->At4g35610------->MYC3<---------ANAC55(2)                            --------->YAB1 <---------ALFIN1           <---------ANAC58<---------ARR14(2)                          --------->TOE2(3) --------->ANAC46           <---------O2 --------->ANAC58                            --------->WOX13(1) --------ALFIN1      --------->HSFB2a(2) --------->ANAC58                        --------->ANAC46<--- -->HSFB2a(1)        <---------HSFB2a(2)<---------LBD16    <---------ZAT14       <---------O2   <---- ---HSFB2a(1)        <---------HSFC1(1)--------->MYB52(1)  --------->ZAT14       --------->O2<-------   tccacatccctcttctgactattctcgaacgcgtggcggagtcacggattcgaaactttactgaagtagagtctatctcatagacgtcaatcttaattgc  1560300                                                                       <-----------HVH21                                                                      --------->DEAR3(1)                                                                     --------->HSFB2a(1)                             ----------->HVH21                       <------------AtMYB77                   <---------YAB1                                    --------->DEAR3(2)                  ------>ZmHOX2a(2)                                  --------->MYB46(3)                 <------ZmHOX2a(2)                                   --------->HSFC1(2)                <---------AGP1         ------>ZmHOX2a(2)             <---------HSFB2a(1)                --------->AGP1       ------->TEIL <---------LBD16  <---------ARR14(2)                <-----------ARR10    --------->ARR11(3)        <---------ANAC46                --------->ARR11(3)   <-----------ARR10      <---------YAB1          <-----------ARR10                --------->ARR14(2)   <---------ARR11(3) <---------ANAC58    ----------->RAV1(1) ---------->ID1 <---------ARR14(2)   --------->ARR14(2) <---------ANAC58   <---------ALFIN1 -----ANAC58    <---------ARR11(3)   <---------AGP1   --------->ARR14(2) --------->SPL7 -------DOF2    <---------ARR14(3)   <---------ARR14(2)<---------ZAT2<---------HSFC1(2)     --------- -----ANAC58    --------->ARR14(3)  <---------CCA1(2) <---------ARR14(2) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --WOX13(1)    <---------CCA1(2)<---------bZIP60(2) --------->LBD16--------->ARR14(2)     -----------   tttgtccccaagagtccagatcttattgactatgacatggatcttagcgacatgcggagcttgtgatgggaaccgtcccaccagaaaatcatcccagaga  1560400                                       <------MYB83                                       <------MYB46(1)                                   <---------MYB46(3)                                  <---------ATHB12                                  --------->ICU4                              <---------ZAT14                              --------->ZAT14                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)           --------->YAB1  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      <-------TEIL         --------->GLK1(1)     --------->GLK1(2)    <---------ARR14(2)    --------->ARR14(2) <---------HSFB2a(2)    <---------GLK1(2)  --------->HSFB2a(2) <---------ALFIN1    <---------ARR14(2)<---------LBD16<--------P                                                     - >LBD16   <---------ZAT6  --------->ARR14(2)  --------->DEAR3(1)          <----------DOF2      ------ ------>AGL1        <----------DOF2--------->ATHB12--------->AtLEC2  <-------TEIL           <--------   gggacagattcagtgataacttctttcggaactgcaatggttgggacaccgtcttgcacagagacttcatattcatcttttttcagagaaggccgtttag  1560500                                     <xxxxxxxxxxxxxxxxsmallRNA(i)                                 <-----------RAV1(2)                               ===============================HOX2a_HOX2a                              --------->ARR14(2)                              <---------ARR14(2)                      <---------ANAC58         ------>MYB83                 <----------DOF2 <---------HSFB2a(2)              ========================HOX2a_HOX2a                                                ----     --------->At4g35610      --------->ARR11(3)            <-----------RAV1(2)                <-----     <---------At4g35610      --------->AGP1   ------>MYB46(1)--------->At4g35610    ----------->HVH21    <-----------RAV1(1)      --------->At4g35610       ------>ZmHOX2a(1)            --------->ETT(1)- -------->MYB46(3)    <---------ANAC58        --------->MYB52(1)              ----------->RAV1(2)---- ----->GT1    <------ZmHOX2a(1)<------ZmHOX2a(2)<------------AtMYB77   ----------->GT1        *TSS--- -MYB52(1)   xxxxxxxxxxxxxxxx>smallRNA(i)   --------->MYB46(3)<---------At4g35610 <-----------HVH21--   taactactgctgcataggacttttgctggacagatccagatggagaaccaactgttcctgcctcagaagagactggtaaaacctggtcggacatgagaaa  1560600             ------>NtERF2             --------->At4g35610            --------->DEAR3(1)            --------->RAP2.3(2)           --------->RAP2.3(1)           --------->DEAR4(2)           <------NtERF2           --------->ATERF1(1)                                                  <---------ANAC46          <---------ATERF1(1)                                                   <---------ANAC55(2)          ------>NtERF2                                                         <---------TGA1a          <---------RAP2.3(1)                                                   --------->ANAC55(2)          <---------DEAR4(2)                                                    <---------bZIP60(2)         --------->RAP2.6(2)                                                    <---------ANAC55(1)         --------->DEAR3(1)                                                     --------->O2         --------->RAP2.3(2)                                                    <---------O2         --------->ANAC46                                                       --------->TGA1a         <---------DEAR3(1)                                                     <---------ANAC58        --------->RAP2.3(1)                                                     <---------ANAC58        --------->DEAR3(2)                                                    <---------TGA2(2)      --------->ANAC58                                                       ----------->HVH21      --------->ANAC58                                                       ----------->TGA1   <------NtERF2                                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  ------>NtERF2                                                            --------->ZAT2 --------->ATERF1(2)         --------->At4g35610                          <---------AGP1 <---------ATERF1(2)      <---------ANAC58                              ==================bZIP_DOF ----->MYB46(3)           <---------ANAC58                              ---------->DOF2 ----ARR14(2)<---------At4g35610   ---------->DOF2         --------->ANAC58--------->At4g35610 -------->RAP2.6(3)      <---------STY1(2)                 --------->ANAC58<---------At4g35610 ----->DEAR3(2)          --------->STY1(2)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ------>DEAR3(1)         --------->ZAT2         --------->TOE2(3)      --------->STY1(1) --------->AHL20(2) ------->MYB52(1)        <---------ZAT2   --------->YAB1<------NtERF2  <---------STY1(1)--------->AHL20(2)   ccgacggcaagccgccgctgaaaccctagcttgctgaaaaagaatgaaaaccctagtcgccaagaaaatcgccctagagctgacgtgtcattaaaaaaaa  1560700                                                                           ------>ZmHOX2a(2)                                                                          <------ZmHOX2a(2)                                                                         <---------ARR11(3)                                                                         <---------ARR14(3)                                                                         --------->ARR14(3)                                                                         --------->ARR14(2)                                                                         --------->ARR11(3)                                                                         --------->AGP1         <---------------AGL15    <-----------RAV1(1)                    <---------ARR14(2)         <---------YAB1     <---------WOX13(1)                           <---------AGP1            <-         --------------->AGL15    <---------ANAC46          --------->CCA1(2)--------->AtLEC2    ----         =============================================================================MADS_MADS  <---      <---------YAB1       >>>>>>>>>ARR2         --------->MYB46(3)     <---------CCA1(2)<---------YAB1   <---------YAB1        <---------YAB1        <---------DOF5.7(2)    --------------->AGL15 <--------   aaaacatcattcttatagtagaaacatttgattgttctgtggtaactggtaacgactaagtgatatggtttactagatcttgcaaacaaatctaattgat  1560800      <---------AHL20(2)            <---------ZAT18 --------YAB1                       --------->ZAT18                     <---------GLK1(2) ----->YAB1                    <---------AHL20(2)          ----------->GT1----------->GT1 ------ICU4                --------->AHL20(2)         ---------->DOF2 <---------YAB1 -WOX13(1)     --------->ZAT6<---------YAB1--------->MYB46(3)   --------->ICU4   <-----------GT1   catgagaaaaaattgtaagactagatcgattattttagtggtctaacaactagtttcaaagttgtaattttcaagattgtttattacatttagtacatgt  1560900                            <-------TEIL                                                     <-------                        --------------->AtSPL8                                              >>>>>>>>>ARR2                        <---------------AtSPL8                                    <---------GLK1(2)                --------->TOE2(3)                                      <---------ZAT14     --------->ATHB12              --------->ARR11(3)                                       --------->ZAT14     --------->YAB1              <---------ARR11(3)               --------------------->WRI1         <---------ARR14(2)             <---------CCA1(2)           <-----------GT1<-----------HVH21         --------->ARR14(2)            --------->AHL20(1)         <----------DOF2 --------->WOX13(1)   <---------ALFIN1>>>>>>>>>ARR1            <---------ARR11(3)   <---------GLK1(2)  ------->TEIL       <---------ZAT18    <---------YAB1            <---------AHL20(1) <---------YAB1  <----------DOF2         --------->ZAT18    --------->ICU4   ttgaagtgaaacaatatatctcaatgtaagtacatgattctctttactactttgaatctatcacagaagttagtgcagacacccgattcgctatgattgt  1561000             <---------ANAC46          ----------->HVH21       --------->DAG2                                                                       <--------      ---------->DOF2                                     --------->ANAC58             <---------YAB1   --------->YAB1                                         --------->ANAC58           --------->YAB1  <------ZmHOX2a(2)                                      --------->YAB1        --------->ANAC58 --------->ARR11(3)                                     <---------ATHB12       --------->ANAC58 <---------ARR11(3)                            <----------DOF2          <---------ANAC58    <-------- --WOX13(1)--------->ZAT18                  <-----------GT1             <---------ANAC58    ---------   taagatcataaagtgacctagatcgatgagcatcaatgtttttttttttcttttgccaataagcatcaatgttttcttgacgagcaattgtcattttatt  1561100  Previous    Next  AGI:  At3g05415.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 9.0e-48 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus) Range:  from: 1555543    to: 1560594    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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