Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                          <---------ALFIN1                                ------->GAMYB  <---------ANAC46     --------->GLK1(1)<---------ANAC58                               <------------MYB.PH3(2)      --------->ANAC58         <---------ANAC58                               <---------MYB46(2)           --------->ANAC58--------->MYB46(3)       <---------ANAC46        <---------MYB52(2)         ---------->DOF2 --------->ANAC46       <---   <----------DOF2  --------->MYB52(1) <-----------------AGL1  ---------->DOF2-------->P         ----   atgggcatttcgtcgaacaacttaatggcatcaactaacttcccacatttcgcatacagagaaagcaaagagttccaaacaaccagagcgtttcgatgga  1525800                                                            ----------------->AGL1         --------->At4g35610                                                            ----------------->AGL3       <-----------RAV1(2)                                                       --------->ANAC58                  <------NtERF2                                                       --------->ANAC58                 ------>NtERF2                                                  <----------ARF1                       <---------At4g35610                                             <---------ANAC46                          <---------ANAC46                                             <---------ANAC58                        ------>NtERF2                                             <---------ANAC58               ------>MYB46(1)<---------At4g35610                            <---------ARR11(3) <------NtERF2=========================================                           <------ZmHOX2a(1) --------->ALFIN1<-----------RAV1(2)     --------->At4g35610                        <---------LBD16     <------NtERF2<------ZmHOX2a(1)  ------>MYB83--------->LBD16               --------->ANAC58             --------->ATERF1(1)--------->At4g35610  <-----------RAV1(1) ------GLK1(1) ----------->GT1    --------->YAB1--------->REM1(2)    <------ZmHOX2a(1) ----------->RAV1(1) ----->GLK1(1) --------->ANAC58  <---------YAB1--------->ALFIN1<---------At4g35610  =================RAV   tatcagcatctacaggctcgaaaaattcaggatttttgataatggaggcgtggagacaaggacccagatgaggaaaccagccttctctgccgcagatgga  1525900                                                                       <---------GLK1(1)                                                                      --------->ARR11(3)                                                                      <---------ARR14(2)                                                                      --------->ARR14(2)                                                                      <---------GLK1(2)                                                                     <------ZmHOX2a(1)                                                              --------->LBD16                                                             <---------ANAC46                           <------ZmHOX2a(1)                <-----------------AG            <--------P              --------->ETT(2)                              <---------LBD16                --------->At5g28300              <---------ETT(2)                            ----------->HVH21               -----------           <---------CCA1(2)  ---------->DOF2           <---------ATERF1(1)      <----------ID1   ---        <-------TEIL     <---------ANAC46   ----------->GT1------>NtERF2         --------->ZAT18  --- =============================================================================MADS_MADS--------->MYB52(1)   taagagaaggctcatatcgacatggttgaggagaaaggtcgagacttggtaatttgggctctgccggattaggattttcgaaggggacaaaacggtagat  1526000                                                                          --------->ANAC55(2)          <------MYB46(1)               --------->HSFB2a(2)               --------->ANAC55(1) >GT1     <------MYB83  --------->GLK1(2)                                 <---------ANAC55(2) ------>ANAC58       --------->MYB52(2) <---------HSFB2a(2)       --------->At4g35610 ------>ANAC58    <-----------HVH21--------->MYB46(3)          --------->LBD16   aagcaagaaggaaggtgagaggtcagtttctgaatcacccatctcgaattcattcaccacaattccgaagctaaacacttaatttgtattttgtaataga  1526100                                         --------->ARR11(3)                                         <---------ARR11(3)        <---------ANAC58                                    <---------MYB52(1)             <---------ANAC46                <-          --------->ANAC46         <-------GAMYB                   <---------ANAC58                <-    <----------DOF2            <---------WRKY18(1)               <-----------HVH21             <-----   <---------ANAC58           --------->WRKY12           ------->TEIL   *TSS              --------->ALFIN1   <---------ANAC58           ----------->HVH21      <---------------AtSPL3           <---------At5g28300   aatttgctttccactctagtagaatcgagtacttgaccgttaagttctcttccaagttgtacctctgtgtcgtctccatttttgttgttacagtggccga  1526200                                                                   <------MYB83                                                                   ----------->GT1                                                                   <------MYB46(1)                                                                  --------->MYB59                                                                <---------MYB52(1) --------DAG2                                              ------>ZmHOX2a(2) <------MYB46(1) ---------DOF2                                           --------->ARR11(3)  <------MYB83          -- -NtERF2  <---------At5g28300      <------------CBF  <------------CBF  <---------AHL20(2)   >>>>>>>>>MYB2   gctttttgttttcacagcgatgggtttgatgggtttacattggttttgaaattcaaattgatctcggttcggtttaatttggtttagagaagaaaaccaa  1526300                                                                                                  ---                                          <------ZmHOX2a(2)                                       ===                                     --------->LBD16                                              <--                                    <---------ANAC58                                              <--          --------->ANAC55(2)       <---------AtLEC2                                         ------->MYC2          <---------ANAC55(2)       <---------ANAC55(1)         <---------ETT(2)             ------->MYC3          --------->ANAC58          <---------ANAC46         <---------ANAC46                <-------MYC3          --------->ANAC58          <---------ANAC58     <---------GLK1(1)                   <-------MYC2          --------->ANAC46      --------->At4g35610    --------->ATHB12                     ---------        --------->CCA1(2)       <-------GAMYB  ---------->DOF2  <---------ZAT18          <---------REM1(2)     --------->ANAC46           <---------At4g35610   <---------YAB1       ========================== ------->AHL20(2)              --------->MYB52(2)     --------->ICU4       <----------DOF2  ---------   aaaaaataagacacgcgatggatttttgagagtgagttgcgtggatcaaaaaaggcatgatttctgtggacaaacccctttagaaatcgtagacacgcgc  1526400      <---------TGA1a      --------->O2      ================================================bZIP_DOF      <---------O2    ----------->RAV1(1)                           <---------ANAC46   ----------->HVH21                              <---------ANAC58   --------->ANAC46                               <---------ANAC58 --------->ANAC46                              --------->ALFIN1 ------->CDC5                               --------->DAG2            --------->ATHB12 ===============MYC_MYB                    ---------->DOF2     --------->At4g35610 -------WRKY38(1)                      ----------->GT1         <---------At4g35610     --------->AHL20(2) -------WRKY12                         <------MYB46(1)         <---------GLK1(1)      --------->YAB1 >ANAC58                               <------MYB83        --------->ALFIN1          --------->AHL20(2) ===============bZIP_DOF           --------->ATHB12      <---------bZIP60(2)     --------->AHL20(2) >ANAC58              ----------->GT1<---------WOX13(1)  <---------ANAC46        <---------AHL20(2)   tcaacgcgacatgggtgagactggttgtgaaatcgctcgattggtaaaagtggggtatgaagtggagctctctcattggctaaaaaaataaaaatagtag  1526500                         <----------DOF2                    ------>ZmHOX2a(1)                 ------>ZmHOX2a(1)              ------>ZmHOX2a(1)          <---------ARR14(2)                      <---------ZAT2          --------->ARR14(2)                      <---------At4g35610                     <---------ANAC58         ------>ZmHOX2a(1)    ---------->ID1      --------->ZAT2                   ---------->DOF2  <xxxxxxxxxxxxxxxxsmallRNA(le3)   --------->AHL20(2)               <---------GLK1(2)     <---------ANAC46 ---------->DOF2<---------ALFIN1 --------->ICU4   --------->At4g35610  <---------AHL20(2) <---------ANAC58   acatatagctcctatcctcctcctcttcttttgtcatttttatattagcctctgctgagaatgaaattcagattttattcaatctgaaagttgtgtgtgt  1526600                                                                                <-----------GT1                                                                    <---------HSFB2a(2)                       ------->TEIL                                 --------->HSFB2a(2)         ----------->GT1          --------->ANAC55(2)     <---------ICU4     <---------ICU4    <-------TEIL       <---------ARR14(2)                <---------YAB1  <---------ATHB12   --------->CCA1(2)   --------->ARR14(2)             ------>ZmHOX2a(1)  --------->MYB46(3)      ----   tttagatacaattgaaaaaaacttgaatctggacttatgtgatactaaaaaacttcctcatcattttgttctgcaaccatttttacaagttggaactaat  1526700  Previous    Next  AGI:  At3g05340.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G25970.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74829.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17602.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 1523469    to: 1526172    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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