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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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         <-----------GT1
    <---------YAB1                       --------->ANAC58
    --------->ICU4           <-------TEIL--------->ANAC46                              ------->GAMYB
  --------->TOE1(3) ----------->RAV1(1)  --------->ANAC58                             --------->MYB46(3)
  --------->TOE2(3)--------->ANAC46  --------->ANAC58                                 <---------MYB52(2)
  --------->YAB1 --------->ANAC46    --------->ANAC58   <-------TEIL             <-----------GT1
 
tcaaaccataattcacttctccacaacacatatacatatgaagcaagcaagtagaaacatacatattcacttcaaacccagttttcacaacaaacccatg  1495000
                     --------->TOE2(3)
                 --------->ARR14(2)
                 <---------ARR14(2)
                 --------->ARR11(3)                                             <----------DOF2
                 <---------ARR11(3)                                <---------LBD16 --------->HSFB2a(2)
                <---------KAN4(1)     --------->TOE2(3) ----------->GT1        <---------DAG2
                <---------GLK1(1)  --------->ANAC58   ---------->DOF2       <-----------GT1
       --------->LBD16       --------->LBD16        <------ZmHOX2a(1)     <---------KAN4(2)   <-----
     <---------LBD16 --------->TOE1(3)--------->TOE1(3)--------->DAG2--------->LBD16          <-----
    ------->GAMYB--------->KAN4(2) --------->ANAC58<----------ID1--------->GLK1(2) <---------HSFB2a(2)
 
aacacaactcccgaattgaatatcccttaacccagaacaagccttaagaacataaggaaaagtgaaataatccggagaataaccttttcgaagcatttct  1495100
                      <---------ARR14(2)
                      --------->ARR14(2)
             <----------DOF2
      <------ZmHOX2a(2)
     --------->ARR11(3)
     <---------ARR11(3)
 ---------->DOF2  <---------LBD16
----ANAC58   <---------DAG2                      --------->YAB1
----ANAC58   <---------------AGL15              <---------YAB1   <---------AHL20(2)                -
 
tggtaaaagatcaatgctttatctggatttggactgtttgagtagcctctgatcatagagttccatatataaacacttggacaatcgatactttcgaaaa  1495200
                                                                       <---------ANAC58
         --------->ZAT2                                                <---------ANAC58
         <---------At4g35610                                        ----------->HVH21
         --------->At4g35610                                        ----------->TGA1             ---
         <---------ZAT2                     --------->GLK1(1)    <------ZmHOX2a(1)       <---------ARR14(2)
       <---------CCA1(2)               --------->ZAT18     <----------DOF2               --------->ARR14(2)
     <---------ANAC58                  --------->ZAT14   <---------At4g35610            <------ZmHOX2a(1)
     <---------ANAC58                  <---------ZAT18   --------->At4g35610          <---------TOE2(3)
 ------>ZmHOX2a(2)--------->YAB1       <---------ZAT14   <------NtERF2 <---------bZIP60(2)      <---
 ===================================HOX2a_HOX2a        <---------DEAR3(1)     --------->YAB1    <---
-------->ARR11(3)<-------TEIL<------ZmHOX2a(1)         <---------RAP2.6(2)   <---------YAB1    <----
 
ctgatctcgcgtagctgagattcatagtctcaggacaagtagtgcagaaatctatgagtcggcttagaggaatgacgtttctgataactgaggatttgat  1495300
                                 ------>ZmHOX2a(2)
                                --------->At4g35610
                               <---------ARR11(3)
                               --------->ARR11(3)
                              --------->YAB1
                             <---------ATHB12                                                   ----
------>TOE2(3)            --------->AtMYB61   <---------ZAT2                                 -------
------ICU4               --------->MYB46(3)   --------->ZAT2  <---------ANAC46         <----------DOF2
-----HAHB4          <---------ARR14(2)        <---------At4g35610                  <---------GLK1(2)
-----YAB1           --------->ARR14(2)        --------->At4g35610               --------->YAB1 <----
 
cattaaaccatggagttgattcagttccaccaatgatctgcaattctctagctgagagagaattggtttgtagtgcttcttcatcatattctttgattat  1495400
                                                                            ----------->GT1
                                         --------->MYB46(3)         <--------P
                                    --------->TOE1(3)             ----------->GT1
                                    --------->TOE2(3)           <---------ANAC58
                                    --------->YAB1              <---------ANAC46
              --------->ICU4  --------->HSFB2a(2)               <---------ANAC58    --------->AHL20(2)
      ---------->DOF2   <---------AHL20(2)                      <---------bZIP60(2)<---------AHL20(2)
----->YAB1------------>CBF    <---------HSFB2a(2)             --------->MYB52(1)  --------->AHL20(2)
-->YAB1  --------->ANAC58     <---------HSFC1(1)             ----------->HVH21    <---------AHL20(2)
-----YAB1--------->ANAC58    <---------LBD16             ---------->DOF2   --------->MYB59
 
catgaaattcaaaggcaatgtttttttttaattctggaaccataacaaacaaaaactcatcaaagtgacgggtaaattttggtaatttaaaatagtttgg  1495500
                                                                                       ---------->DOF2
                                                                                      ----------->HVH21
                                                                                      <---------MYB52(1)
                                                                                     <---------SPL7
                                                                                    --------->RAP2.6(2)
                                                                                   --------->RAP2.3(1)
                                                                                   <------NtERF2
                                                                                  ------>NtERF2
                                 <---------YAB1              ----------->RAV1(2) --------->ANAC46
                         <------ZmHOX2a(1)                 <-----------GT1       <---------DEAR3(1)
                       <---------TOE1(3)            >>>>>>>>>>GT-3b              --------->DEAR3(1)
    <---------YAB1     <---------TOE2(3)       ---------->DOF2--------->TOE2(2)------->GAMYB       -
 
gtttattttgaatgttgaaagagtttaaggattattttgaaagtttcaacaaaagaaaaatataacctgtgtttagtcacaacgacgccgtaacgctgaa  1495600
                                                         ------>NtERF2
                                                         <---------ATERF1(1)
                                                         <---------ERF1
                                                         <---------DEAR4(2)
                                                         <---------RAP2.3(1)
                                                        <---------DEAR3(1)
                                                        <---------RAP2.3(2)
                                                        --------->ATERF1(2)
                                                     ------>ZmHOX2a(2)
                                                    <------ZmHOX2a(2)
                                                   --------->ARR14(2)
                                                   <---------ARR14(2)
                                                   <---------ARR11(3)
                                                   --------->ARR11(3)
                                          <------NtERF2 --------->DEAR3(1)
                                          --------->RAP2.3(1)
                                          --------->ATERF1(1)
                                         <---------RAP2.3(1)
                                         ------>NtERF2 <---------LBD16
                                         <---------ERF1--------->ATERF1(1)
                                         <---------ORA47(2)
                                         <---------ATERF1(1)    <---------At4g35610
                                        <---------RRTF1(3)--------->ATERF1(1)
                                        <---------RRTF1(2)<------NtERF2
                                        <---------ANAC46<---------ATERF1(2)
                                        <---------DREB2C(2)   <---------PCF2         ------>ZmHOX2a(2)
                                        <---------DEAR3(1)<---------LBD16            ===============
                                        --------->ATERF1(2)  <------NtERF2          <------ZmHOX2a(2)
                                        <---------ATERF1(2)  --------->ATERF1(1)   <---------ARR14(2)
                                        <---------RAP2.6(2) <---------MYB46(3)     ------->TEIL
                                 <------MYB46(1)  --------->GLK1(1) --------->ARR14(2)          ====
     --------->MYB52(1)          <------MYB83     <---------GLK1(1) <---------ARR14(2)          ====
  *TSS                        <-------GAMYB     <------ZmHOX2a(1) <---------MYB46(3)================
 ------>NtERF2   ----------->RAV1(2)    <---------RAP2.3(2) ------>NtERF2          --------->ARR14(2)
-------->At4g35610    <-----------HVH21 <---------RAP2.3(3)<---------ANAC46 <---------TOE2(3)   ----
 
tcagcgccaagcggagagagacctgagtcagtgagttggtatggcggcgaaggagatcgccggcgggagcggttctattgacgatggatccgattttgat  1495700
                                    -------->P
                                    ------>MYB46(1)      --------->ANAC58
           <---------ANAC46         ------>MYB83         --------->ANAC58
           <---------ANAC58        ------>ZmHOX2a(1)  <---------SPL7
           <---------ANAC58    <---------ARR14(2)    <---------ANAC58
           --------------------->WRI1 --------->TOE2(3) --------->SPL7
    ------>ZmHOX2a(1)          --------->ARR14(2)    <---------ANAC58
===========HOX2a_HOX2a      <---------MYB52(1)      --------------->AtSPL3                         <
===============================HOX2a_HOX2a          <---------------AtSPL3                        --
===========HOX2a_HOX2a     --------->LBD16          --------------->AtSPL8                        --
===========HOX2a_HOX2a    <---------ANAC46        ------------------>SPL14                     <----
-->ZmHOX2a(2)           ------>ZmHOX2a(1)  <-----------GT1          <----------DOF2           <-----
 
ccatgtcctatttgccttggacaattcctccgtgaatcctaccttgatacctgtttccgtacgcttcttctctttttcagttttctgttaaaacttgtgg  1495800
                                                                                            --------
  --------->HSFC1(2)               <---------ANAC58                                     --------->ATHB12
  <---------HSFC1(2)               <---------ANAC46                                   <---------WOX13(1)
---------At4g35610                 <---------ANAC58                               --------->YAB1
--------->ARR10      <---------GLK1(2)                                        <---------AHL20(2)
------->MYB52(2)  --------->HSFB2a(2)                                         --------->AHL20(2)
---GAMYB --------->ATHB12        <---------YAB1           <----------DOF2    --------->AHL20(2)
----MYB46(3)      <---------HSFB2a(2)               <-------TEIL             <---------AHL20(2)<----
 
ttagatgcttcttgatttcatctagaatttgaagttttgagtgtgtattcaaagattcaatcttttttttctgtgaacaatttaatcagattgattagtt  1495900
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AGI:  At3g05240.1   
Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G08070.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17639.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885)
Range:  from: 1493690    to: 1495387    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At3g05250.1   
Description:  zinc finger (C3HC4-type RING finger) family protein. similar to zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G67180.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17638.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)
Range:  from: 1495603    to: 1497475    Orientation: Forward
Links:  TAIR  MIPS 
 
 
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