AthaMap TU-Logo
Search
 
   Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
Go to graphical and table display 

1        10        20        30        40        50        60        70        80        90        100 
                                          <-------TEIL                                            <-
          <---------------------WRI1  --------->LBD16                                 -------->ATHB1
       ------>MYB46(1)               <---------ANAC58              --------------->AtSPL8         --
       ------>MYB83                  <---------ANAC46             ---------->DOF2     --------->ATHB12
     --------->DREB2C(2)  <---------GLK1(1)                      <---------WRKY45     --------->ATHB51
     --------->DEAR3(1)   --------->GLK1(1) ------->TEIL<---------ARR11(3)            <---------ICU4
---->HSFB2a(2)       ---------->DOF2 <---------ANAC58   --------->GLK1(2)            <---------YAB1
-----HSFB2a(2)<-----------HVH21     <---------LBD16     --------->ARR11(3)           --------->ICU4
 
aaaaaacaccgactacgcttcacagaaagaaatccattttgcggatgcattttgagaaaaatctttagtcaaagtactactatttagaattattgcattt  1479100
                                                                                  ------>ZmHOX2a(2)
                                                                                 --------->GLK1(1)
                                                                                 <------ZmHOX2a(2)
                                                                                 <---------GLK1(1)
                                                                                <-----------ARR10
                                                                                --------->ARR14(2)
                                                                                ------->TEIL
                                                                                <---------AGP1
                                                                                --------->ARR11(3)
                                                                                <---------ARR14(2)
                                                                                <---------ARR11(3)
                                                                               <---------CCA1(2)
                                                    --------->RAP2.6(2)      --------->ANAC58
                                                    --------->ANAC46         --------->ANAC55(2)
                                                    --------->ANAC58         <---------ANAC55(2)
                                                    --------->ANAC58         --------->ANAC55(1)
                                                   -------->ZAP1             --------->ANAC58
            <---------AHL20(2)                     --------->MYB46(3)       <---------LBD16
            --------->AHL20(2)                    <---------At5g28300      --------->MYB52(1)
            <---------YAB1                       <---------WRKY18(1)      ----------->HVH21
           --------->AHL20(2)                --------->ATHB51            <-----------HVH21
           <---------AHL20(1)                -------->ATHB1             --------->O2
           --------->AHL20(1)                --------->ATHB12           <---------At4g35610
           <---------AHL20(2)               --------->ICU4              --------->At4g35610
        --------->AHL20(2)                  <---------AHL20(2)          --------->bZIP60(2)
---------->DOF2                             <---------YAB1             --------->MYB59
--------HSFB2a(2)            ----------->GT1--------->AHL20(1)      <-----------HVH21
------->HSFB2a(2)   --------->AtLEC2        <---------ATHB51    ----------------------->TaNAC69(2)--
 
tccaaaagaaataatataatttcatgcaaaattggttatatatgaaaattattgaccgccactaggtctccagtcaggtcacggatctcatcgtgtatga  1479200
                                                                   --------->ZAT6
                                                     <---------TOE2(3)
                                    --------->AHL20(2)           <-----------GT1
                             --------->KAN4(2)       <---------TOE1(3)                    <---------MYB52(1)
   <---------YAB1        <------ZmHOX2a(1) --------->ICU4        ------->TEIL <---------AHL20(2)
 --------->YAB1    <---------HSFB2a(2)  <---------AHL20(2)    --------->ANAC55(2)<-----------GT1
<---------YAB1     --------->HSFB2a(2)  --------->AHL20(2)--------->CCA1(2)   --------->AHL20(2)<---
------->YAB1     --------->AtLEC2--------->TOE2(3)  --------->MYB52(1)     ------->TEIL  <-------GAMYB
 
attatcatgagtcaatttccatccagaaggattatcccttaaaataaatattagttaagggatatatgtaactctatgcatttatttcgctccgttatat  1479300
                                                  <---------ARR11(3)
                                                  <---------GLK1(2)                        ---------
                                            --------->ZAT6                          <---------ZAT18
                                          ------->TEIL                              --------->ZAT18
                                       --------->ANAC55(2)                         <---------ANAC46
   <---------ANAC46                 <---------ARR14(2)                        --------->YAB1
--------GT1                         --------->ARR14(2)<----------DOF2       <-----------HVH21
 
tacatgctgtgtaatcacatgtatgatgtaatctatgcatatatgtaactctagatactttagacaattggatgaagactgtcatagtgtgcaaaaatac  1479400
                                                   <---------ANAC58
                                                   <---------ANAC46
                                                   <---------ANAC58
                                             ------->MYC4
                                             <-------MYC3
                                             ------->MYC2
                                             ------->MYC3
                                             <-------MYC4
                                             <-------MYC2
                                            --------->ANAC55(2)
                                            <---------ANAC55(2)
                                            <---------TGA1a
                                            <--------ABF1
                                            --------->TGA1a
                                            ================================================bZIP_DOF
                         <---------ANAC46   --------->O2
                    --------->O2            <---------O2                 <---------AHL20(2)
               <---------ANAC58    --------->TOE1(3)                    <---------YAB1      --------
               <---------ANAC58    --------->YAB1  --------->ANAC55(2)<---------ICU4   <---------ANAC58
  <---------AHL20(2)<---------O2   --------->TOE2(3)               --------->ANAC55(2) <---------ANAC58
>YAB1         ---------->ID1    --------->YAB1   <-----------GT1 <-----------GT1 <----------DOF2  --
 
tggttttaatttgttttgtcgtctcgtctcgtctataatcttaagacacgtgttacgttgtatcaaatttacataattaatgggctttaggcttgaacaa  1479500
                                                                                                   -
                                                                 ---------->DOF2           ---------
                                                            ----------->GT1                <--------
                                                          ---------->DOF2             <---------ATHB12
                                                       --------->LBD16              --------->WOX13(1)
    ----------->RAV1(1)                               <---------HSFB2a(2)         <-------TEIL   <--
 --------->PCF2                                       --------->LBD16            --------->GLK1(2)--
<-----------TCP11(1)                                 <---------LBD16           --------->GLK1(1)<---
---->CBF---------->DOF2                    *TSS     <---------LBD16       <---------HSFB2a(2)   <---
-------->DOF2 ----------->GT1        <------ZmHOX2a(1)--------->HSFB2a(2) <---------LBD16 <---------ATHB12
 
ttaaggcccacaaaagcctgttaatcccatgggaagttgaggacgagaaacagagtccgggaaaagaaaaaagagctctcggagattcaatcactcatgg  1479600
                                                                              <---------ANAC58
                                                                              <---------ANAC58
                                                                            <------MYB83
                                       ------>MYB83                         <------MYB46(1)
                                       ------>MYB46(1)                    <---------WOX13(1)
                                      ----------->RAV1(1)               --------->ATHB12
                                      --------->MYB52(1)               <---------YAB1
                         --------->LBD16                             ------>ZmHOX2a(2)
-------->SPL7           <---------HSFB2a(2)                          ===============================
>YAB1     ------>NtERF2 --------->HSFB2a(2) <---------WOX13(1)      <------ZmHOX2a(2)         <-----
-ICU4    --------->DEAR3(1)      --------->At4g35610                ================================
-------SPL7         --------->GLK1(1)--------->MYB46(3)            <---------ARR14(2)      <--------
------->MYB52(1)    <---------GLK1(1)--------->AtMYB61             <---------ARR11(3)      <--------
------ANAC58  --------->At5g28300<---------ZAT14--------->HSFB2a(2)--------->ARR11(3)    --------->SPL7
------ANAC58<---------DEAR3(1)   --------->ZAT18<---------HSFB2a(2)--------->ARR14(2)  <---------SPL7
 
cgaacgaagacgacgacggtgagaaatccagaagtctgcaccaacagattgctagaaaacccaaaacccagatcgtgattggtgtgccatcgtaccagga  1479700
                                 <---------CCA1(2)                                          --------
                               <---------ALFIN1                                             ========
                             ------>NtERF2                                                  <-------
         --------->ZAT18 <---------ALFIN1                                                   --------
       <---------At4g35610------>NtERF2                                                     <-------
    ---------->DOF2      --------->ANAC58                                                -----------
 <---------HSFB2a(2)     --------->ANAC46                                               --------->SPL7
 --------->HSFB2a(2)     --------->ANAC58                                             <-----------HVH21
=HOX2a_HOX2a           <---------ALFIN1                                       <-----------HVH21
-ZmHOX2a(1)           --------->ZAT18                                     <----------DOF2<---------TOE1(1)
=HOX2a_HOX2a          <---------ZAT18      --------->ANAC58               ==========================
-LBD16 --------->At4g35610<---------ATERF1(1)       --------->LBD16 ================================
---RAV1(2)            <---------WRKY38(1)  --------->ANAC58         <----------DOF2   <---------SPL7
 
agttttggaaagctcacagacgaagtccacgcctccatctctcttcaagccttcccagagtttctctcaggctttcgctttcgtcaagtcgtccgacgtc  1479800
                          <---------ATERF1(1)
                          ------>NtERF2
                         --------->RAP2.3(2)
                         --------->RAP2.3(3)
                         --------->DEAR3(1)
                         --------->RAP2.6(2)
                        --------->RAP2.3(1)
                        --------->MYB46(3)
                        --------->ERF1
                       ------>NtERF2                      --------->ZAT2
                       <---------ATERF1(1)                <---------ZAT2
                       --------->ZAT2                     --------->At4g35610
                       <---------ZAT2                   =====================RAV
                       --------->At4g35610          <----------DOF2
                       <---------At4g35610       <---------DEAR3(1)
                    <---------At4g35610         <---------ZAT18
                    --------->LBD16          --------->SPL7
                    --------->At4g35610     <------NtERF2 <---------At4g35610
                   --------->ANAC46         <---------MYB52(1)
                  <---------LBD16           --------->ATERF1(1)
->O2             ------>ZmHOX2a(1)          --------->ALFIN1
=================================MYC_MYB   <---------RAP2.6(3)
--O2------>ZmHOX2a(1)--------->ERF1        <-----------HVH21     <---------ALFIN1
->TGA1a  <---------ALFIN1------->GAMYB    --------->DEAR3(1)     ----------->RAV1(1)
--TGA1a------>ZmHOX2a(1)--------->ATERF1(1)<---------SPL7<---------TOE1(2)          <---------AHL20(2)
>HVH21<---------ALFIN1--------->DEAR3(1)--------->ZAT2  <-----------RAV1(2)        <---------AHL20(1)
==bZIP_DOF   ------>ZmHOX2a(1)          <---------At4g35610   --------->PCF2       --------->AHL20(1)
==bZIP_DOF------>ZmHOX2a(1)<------NtERF2--------->At4g35610  --------->ZAT18 ----------->GT1      --
 
tactctcctcctcctccttcctccgcagccgcctcttcttctcagccgtcgggcgcttctcaggtgccccacagttcaaggtgttatatatttgtttgac  1479900
                                                                                                 ---
                                                                                               -----
                                                                                               -----
                                                                                              ------
                                                       --------->HSFB2a(1)                  <-------
                                                    --------->LBD16                       <---------
                                                --------->ARR14(2)                 --------->ZAT14
                                                <---------ARR14(2)     <-----------GT1    <---------
------>P           <---------TOE2(3)           <---------GLK1(1)    <---------ICU4 <---------ZAT14
 
ttacctttggaattacaaagtttagattagtttgatgaaattagtgctgcaattccgaacatttctactgatttttaccattcttctgcagtgatggtac  1480000
<- Previous    Next ->

AGI:  At3g05210.1   
Description:  ERCC1 (UV REPAIR DEFICIENT 7). Identical to DNA excision repair protein ERCC-1 (ERCC1) [Arabidopsis Thaliana] (GB:Q9MA98); similar to unnamed protein product [Vitis vinifera] (GB:CAO17655.1); contains InterPro domain RuvA domain 2-like (InterPro:IPR010994); contains InterPro domain Helix-hairpin-helix DNA-binding, class 1; (InterPro:IPR003583); contains InterPro domain Helix-hairpin-helix motif; (InterPro:IPR000445); contains InterPro domain DNA repair protein rad10; (InterPro:IPR004579)
Range:  from: 1479544    to: 1482048    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

    printer-friendly version