Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                   <---------ARR11(3)                                                                 --------->ARR11(3)                                                                <---------CCA1(2)                                                          ------>NtERF2                     ---------                                      ----------->GT1     ----------->RAV1(1)     <---------GLK1(2)        --------->AHL20(2)           --------->YAB1      --------->ANAC46      --------->YAB1 ------ICU4                  ---------->DOF2            --------->At4g35610 --------->WOX13(1)     --   cattgcacgattaaatacaaaaattagccactagagcaatgagaaaaaaactcgaatcagcgccatatatcttcccatctatcacattctcagccaatta  1388400                                                                                --------->ZAT6                                                                             --------------->AGL15                                                                             <---------------AGL15                                             --------->CCA1(2)      --------->ARR14(2)                                         <---------TOE2(3)          <---------ARR11(3)                                         <---------TOE1(3)          <---------ARR14(2)                                 --------->YAB1                     --------->ARR11(3)                                 -------->ATHB1                     --------->AGP1  --------->ANAC58        ----------->GT1          --------->ATHB12    --------->ANAC58 ------>ZmHOX2a(2) --------->ANAC58                <---------ICU4      --------->ANAC58--------->CCA1(2)           ---- --------->ANAC58               <---------YAB1       --------->ANAC46<------ZmHOX2a(2)  -------->P<-- --------->ANAC46              --------->GLK1(2)<-------TEIL        <---------AGP1  --------->ANAC46 >WOX13(1)              ---------->DOF2 <---------DOF5.7(2)        <---------CCA1(2)--------->ANAC58 ------->ANAC46       <---------YAB1    --------->MYB52(1) --------->YAB1--------->REM1(1)    <------   cacacgagaaacgataaatccaatatcaaagagaatcattgctaacgatatacattcgccatcatcttcagatctacaactaatactagcaacctagaga  1388500                                                                    ------>NtERF2                                                                    <---------RAP2.6(3)                                                                   >>>>>>>>>>DREB1A                                                                   >>>>>>>>>>DREB1C                                                                   >>>>>>>>>>DREB1B                                                                   ----------->HVH21                                                                   --------->DEAR3(1)                                                                  --------->DEAR3(2)                                                                  --------->ATERF1(1)                                                                 <------NtERF2             --------->AGP1                                      <---------ATERF1(1)          ------>ZmHOX2a(1)             <---------ARR14(2)                             <---------MYB46(3)               --------       --------->WOX13(1)                                   --------->ALFIN1               <------ZmHOX2a(2)   --------->YAB1                                         <---------ZAT2                  <---------ARR14(2)  --------->ICU4 ---------->DOF2                          --------->At4g35610             --------->ARR14(2)  <---------ATHB12           --------->YAB1               --------->ZAT2                ----------->ARR10 ----->CCA1(2)<------ZmHOX2a(2)     <---------ZAT6        <---------At4g35610          <------NtERF2 -----TEIL   --------->ARR14(2)     ----------->GT1<---------HSFB2a(2)          --------->MYB52(1)  < ---ZAT6-------->P          <---------YAB1         --------->HSFB2a(2)        --------->MYB46(3)   --   tacaatgatcaaccagatcgaaagaagacgatgatcaagtgtaaaacaaacctctcggagagctggtggccgacctgataaccaatggcctcgatcctcc  1388600                                                                                     <---------ALFIN1                                                                                   ------>NtERF2             <---------ANAC58                                                      --------->LBD16             <---------ANAC58                                                     --------->ANAC58           ------>NtERF2                                                          --------->ANAC58           --------->LBD16                                                        --------->ANAC46         <---------LBD16                                                    --------->At4g35610       --------->ARR14(2)                                                   <---------At4g35610       <---------ARR14(2)                                                   <---------ZAT2      <---------GLK1(1)                                                     --------->ZAT2      --------->GLK1(1)              <---------ZAT14                    <---------ALFIN1     ----------->ARR10     <---------ARR14(2)                           --------->ANAC46   <---------ANAC46        --------->GLK1(2)     <---------ALFIN1      <---------REM1(2)  <------NtERF2            --------->ARR14(2)  ------>NtERF2<---------YAB1--------->ANAC46 ->TOE1(2)<---------RAP2.6(2)        --------->ZAT14        <---------TOE2(3)    <---------LBD16 ---------DEAR3(1)        <---------GLK1(2)   --------->DEAR3(1)       <---------ZAT14   --------->ZAT14 ------->SPL7<---------ANAC46    <---------ALFIN1--------->AtMYB61     --------->ZAT14 --------->O2<-   gagcggcgagttccggcttgttagcatagaatcggccactgtacatcgccaccatctccattaacatagtgtctacacagctctccgccacttctctccc  1388700                                                               --------->ZAT2                                                               <---------At4g35610                                                               <---------ZAT2                                                               --------->HSFB2a(1)                                                               --------->At4g35610                                                               <---------HSFB2a(1)                                                               --------->HSFC1(2)                                                               <---------HSFC1(2)                                                              ------->TEIL                                                  <---------ANAC58          <-----------GT1                          <---------ANAC58        <---------ANAC58          <---------AHL20(2)                          <---------ANAC58   --------->ALFIN1 *TSS    <------ZmHOX2a(2)    <---------AHL20(2) --------CCA1(2)      <----------DOF2<---------ALFIN1      <---------MYB52(2)              <---------   catttcttctctctctctcagactctttccgtcttctctccaccggtttggggcttatgcaacgaagctccgatctattaacttgtagagtatttacatt  1388800                                                                                       <------ZmHOX2a(2)                                                              --------->TOE1(3)       <---------ARR14(2)                                                        --------->YAB1                --------->ARR14(2)                                   --------->bZIP60(1)  <---------ICU4            <---------LBD16    ------>ZmHOX2a(1)          <-----------HVH21       <---------YAB1         <---------AHL20(2)    ================================HOX2a_HOX2a      --------->YAB1           --------->AHL20(2)   --------->TOE2(3)         ------>ZmHOX2a(2)---------->DOF2 --------->TOE2(3) <-----------GT1 --GT1            <---------YAB1   <---------bZIP60(1) --------->ICU4  ----------->HVH21------>ZmHOX2a(2)   taagtccttaatagttttctattatttctgatctgtgacttcattttttaaagagtcatgataaccttaatctctgacatttaaaccggatcgtcttggt  1388900                                                              <---------At4g35610                                                              --------->At4g35610                                                             --------->ALFIN1                              -------->ATHB1                --------->ZAT18                              <---------ICU4               <---------ANAC46                              <---------AHL20(2)           <---------ANAC58                              --------->ATHB51          <---------AtMYB61                              --------->AHL20(2)     <---------DAG2               ----------->GT1                              <--------HAHB4         <----------DOF2             <---------TOE2(3)  <                             --------->ICU4         <---------YAB1               <---------YAB1     <              --------->MYB52(1)            ----------->GT1<---------ANAC58      <---------TOE1(3)  <   <-----------GT1           <---------ATHB51     <-----------GT1         <---------YAB1          <--   tcaattttccttcaaatacccgatttatacaattatttcaagtgaatggaaattacttttggtgtgctgaatgctgatcatttatggttaaaaatcaatt  1389000                                           --------->ATHB12                                        <---------ICU4                                       <---------YAB1                                       --------->ICU4                                --------->AHL20(2)                          <---------MYB46(3)                                <---------AHL20(2)                  <----------DOF2                             --------->AHL20(2)                  --------->ARR11(3)                            <---------AHL20(2)                   <---------AHL20(1)                            --------->AHL20(2)                   <---------ARR11(3)                        <---------AHL20(2)--------->ICU4        --------->CCA1(1)                        --------->AHL20(2)<---------YAB1        --------->RVE1(1)               --------->ARR11(3)    --------->YAB1         <---------AHL20(2) ---------ANAC58  <---------AHL20(2) <---------ICU4         --------->AHL20(2)   ---------->DOF2 ---------ANAC46  --------->AHL20(2)<---------ATHB12    <----------DOF2    <---------ANAC46 ---------ANAC58--------->CCA1(2)<---------AHL20(2)     <---------DAG2  <-----------RAV1(1) ---------GT1  <---------ARR11(3)--------->AHL20(2)  <------ZmHOX2a(1)  <---------AtMYB61       -----   ttacttgtataatatgagatataaatataaataaataaatcatgattattgaataggacttttttaatatctttttggtgggcaaaagagagacaattgt  1389100               --------->AHL20(2)               <---------AHL20(2)              <---------AHL20(2)              <---------AHL20(1)              <---------AHL20(2)              --------->AHL20(2)              --------->AHL20(2)          --------------->AGL15     --------->ATHB51    <-------MYC3                    --------->ATHB12    ------->MYC3          --------->YAB1     <---------YAB1  <---------TOE2(2)   ---------->DOF2      <---------ICU4  <---------TOE1(2)--------->AHL20(2)     --------->ICU4 <---------ALFIN1  <---------AHL20(2)     <---------YAB1                        <---------WOX13(1) ----->ARF1   <---------AHL20(2)   <---------YAB1                 <-----------GT1                <---   ctcccacgttttctaatttaattaaaaagaataacacattattgattattaaatagcacttcaaaaatttacatttcataagattgattttgaaattaga  1389200                                                                                    <-----------GT1                                                                                <--------ATHB1                                                                                --------->ATHB51                                                                                <--------HAHB4                                                                                --------->YAB1                                                    <---------AHL20(2)          <---------ICU4 ------                                       ---------->DOF2           <---------ICU4--------->AHL20(2)                             <-------TEIL           --------->AHL20(2)<---------ANAC55(2)<----------DOF2                            --------->CCA1(2)   --------->ICU4   --------->ANAC46  --------->AHL20(2)        --------->ICU4     --------->ARR11(3) --------->AHL20(2) --------->YAB1<---------ATHB51<-----   ----------->GT1       <---------TOE2(3)    --------->YAB1   <-----------GT1 --------->ICU4<------- ---ZmHOX2a(2)        --------->AHL20(2)   --------->YAB1  <----------DOF2     <---------ATHB12------   tcagcttgtaataagtctttcaaatttaagatacagaattgaaaagaataatatttaaattctttaaacatcacatgtccaataattaactctttaaaca  1389300  Previous    Next  AGI:  At3g05000.1    Description:  transport protein particle (TRAPP) component Bet3 family protein. similar to unknown [Populus trichocarpa] (GB:ABK93720.1); contains InterPro domain Transport protein particle (TRAPP) component, Bet3 (InterPro:IPR007194) Range:  from: 1387181    to: 1388762    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version