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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                      ----------->RAV1(1)
                           --------->At4g35610
                         ------>ZmHOX2a(2)                                                 ---------
                        <---------GLK1(1)                                              <------ZmHOX2a(1)
                       --------->ARR14(2)                                             --------->At4g35610
                       <---------ARR11(3)                                             <---------At4g35610
                       <---------AGP1<---------ETT(1)                                >>>>>>>GRF7
                       --------->ARR11(3)                 --------->YAB1            <-----------RAV1(2)
            --------->CCA1(2)<----------DOF2         --------->HSFB2a(1)          <-----------HVH21
          --------->YAB1<---------At4g35610          <---------HSFC1(2)        <---------ANAC58
 --------->LBD16       <---------ARR14(2)            --------->HSFC1(2)        <---------ANAC58
--------->HSFB2a(2)    ------->TEIL  ----------->HVH21 <----------DOF2         <---------AtLEC2    -
 
cacccagaaacaatgatatggcaatggatctgcttcacttccgacagaaaactcgaagctttcatgagatagagaaacgtttgcctgtcaggagagacac  1303000
                                                           <---------YAB1
                                                         --------->GLK1(1)
                                                         <---------GLK1(1)
                                                        --------->ARR11(3)
                                                        <---------ARR11(3)
                                                    --------->At4g35610
      --------->YAB1                             ---------->DOF2
     <---------ATHB12                        --------->ANAC58                                -------
     <---------YAB1                  <-----------GT1<---------At4g35610                   <------MYB46(1)
 <---------MYB59               <-------TEIL  --------->ANAC58       ----------->GT1       <------MYB83
>CCA1(2)                ---------->DOF2   --------->ZAT2<---------ARR14(2)              --------->ALFIN1
----->NtERF2           --------->AtMYB61  <---------ZAT2--------->ARR14(2)              <--------P
 
ggtgcctaatcatagaactatacagaccaaagcattcatttttcgagctcgaaacagcagatatcattgtgttgtaaacaaaaacattcgggttgggagt  1303100
                              --------->GLK1(2)
                             <---------ARR14(2)                   <---------DEAR3(1)
                             --------->ARR14(2)                   <---------RAP2.3(2)
                             <---------GLK1(2)               --------->CCA1(2)     ------->TEIL
             --------->HSFB2a(1)                   --------->HSFB2a(2)          --------->ANAC55(2)
             <---------HSFC1(2)                    ------>NtERF2  <---------RAP2.3(3)    <---------At4g35610
             <---------HSFB2a(1)                   <---------HSFB2a(2)          <---------ANAC55(2)
   <---------TOE2(3)       ----------->ARR10   ------>ZmHOX2a(2) --------->RAP2.6(3)     --------->At4g35610
---->GT1     --------->HSFC1(2)   <---------LBD16 --------->DEAR3(1)<---------At4g35610<-----------RAV1(2)
 
gaaattaagaaatagaagcttcgccaagtcgagattctctgggtatgtgatcgccgagaagaagataagacggctcatgggaaacgtatcgcagatgaga  1303200
                                                                                 <---------ZAT2
                                                                                 --------->At4g35610
                                       --------->LBD16                           <---------At4g35610
                                       <---------HSFB2a(2)            <---------WOX13(1)
          ------>ZmHOX2a(2)            ------>ZmHOX2a(1)--------->ANAC58         --------->ZAT2
          ====================================HOX2a_HOX2a   --------->ANAC58     ----------->RAV1(2)
        <---------ARR11(3)             --------->HSFB2a(2)  --------->ANAC58   <-----------RAV1(2)
        --------->ARR11(3)            <---------LBD16   --------->ANAC58  <---------YAB1           <
  --------->ANAC58        <----------DOF2            <---------HSFB2a(2) <---------TOE2(3) <--------
  --------->ANAC58       <---------ANAC46            --------->HSFB2a(2)--------->YAB1   --------->ATHB12
 
ttgaaacgcatgatctgtgccaaaacctgcttgaattgattcctggaattgcaattctcgagcaagacaagagattgatgattcagctgaagtgattgaa  1303300
                                                                ----------->RAV1(1)
                                                            --------->MYB46(3)
                                                        <------NtERF2
                                                        --------->LBD16
                                                        ------>NtERF2
                                                       --------->RAP2.3(2)
               <---------ANAC58                        --------->RAP2.6(2)
               <---------ANAC58                        --------->RRTF1(2)
          <---------ANAC58                             --------->DEAR3(1)
          <-------GAMYB                                --------->ANAC46
          <---------ANAC58                            --------->RAP2.3(1)
         <------MYB83                               <---------DEAR3(1)
  ------>ZmHOX2a(2)           <---------ANAC58      --------->ANAC46
 <------ZmHOX2a(2)            <---------ANAC58     ------>ZmHOX2a(1)                              --
<---------ARR11(3)         --------->GLK1(2)   --------->ARR14(2)                              -----
<---------ARR14(2)     <---------ALFIN1        <---------ARR14(2)    ---------->DOF2      --------->YAB1
--------->ARR14(2)     ----------->RAV1(1)    <---------GLK1(1)--------->MYB46(3)        <---------YAB1
------ZmHOX2a(1)    --------->PCF2     <---------AHL20(2)   --------->REM1(1)      <---------------AGL15
-WOX13(1)<------MYB46(1)  <---------GLK1(2)--------->YAB1 ----------->RAV1(1)     <-----------------AGL3
 
caggatcccatttggttgtcttgctcccacattctgtgccaaataatcgaaatcctcgccgcaacaacaacacaaagcacatacttctatttttgataac  1303400
                                                 --------->RAP2.6(2)
                                        --------->AHL20(2)
                                        <---------AHL20(2)
                    --------->YAB1     --------->AHL20(2)
                    <---------ICU4     --------->AHL20(1)
                   --------->ICU4      <---------AHL20(2)
                <---------AHL20(2)     <---------AHL20(1)
              <---------ANAC55(2)     --------->AHL20(2)                    ---------->DOF2
              ----------->GT1   --------->AHL20(2)              ----------->RAV1(2)
-------->DOF2 --------->ANAC55(2)<---------AHL20(2)             <---------At4g35610
---->ZAT6    --------->MYB59    <---------AHL20(2)<------NtERF2 --------->At4g35610
 
acaaagcacatcaagttatgtaattatgttcttaatttaaaattaatttaggccgcatcgatatatcatctggcccattaaaagcccgattaatatggac  1303500
                <------------CBF
              <---------ARR11(3)
              <---------ARR14(2)
              <---------ARR14(3)                                                     <------MYB46(1)
              --------->ARR11(3)                                              ----------------->AGL1
              --------->ARR14(2)                                              ------------>CBF
              --------->ARR14(3)                              <-------TEIL--------->At4g35610
      ------->TEIL                                            ------->TEIL<---------At4g35610   ----
    <---------ZAT14                                       --------------->AtSPL8     <------MYB83
    --------->ZAT14                      <----------DOF2  <---------------AtSPL8    --------->MYB59<
 
tattctctgtacttgaagatattgtttttagtataagaagaacccttttctatggattttgtatgtacatctaatacatctgccaatttggttcgatttg  1303600
                                                                                  <-----------TBP
      --------->TOE2(3)               ----------->GT1         <---------ANAC58<---------ANAC46
     <---------YAB1                 ------->TEIL              <---------ANAC46----------->GT1
    --------->ARR11(3)           --------->ANAC58             <---------ANAC58<------MYB83
    <---------ARR11(3)           --------->ANAC46         --------->At4g35610 <------MYB46(1)
   --------->YAB1                --------->ANAC58         <---------At4g35610--------->MYB59
------>ID1                 <----------DOF2           ---------->DOF2         --------->MYB46(2)
---------YAB1           <-----------GT1        ------------>CBF          <---------YAB1        -----
 
ttctaattatcttagataataggtgtttaactttacacgaatcgtagaaacacaatgaaagagctgcttgcacattatgtttggtatataaaactagagg  1303700
                                                                           --------->ZAT2
                                                                           <---------ZAT2
                                                                           <---------TGA1a
                                                                           --------->TGA1a
                                                                           =========================
                                                                  <-----------RAV1(1)
                                                           --------->ARR14(3)
                                     --------->At4g35610   --------->AHL20(1)
            <---------PCF5        <---------At4g35610      --------->ARR11(3)
           ----------->HVH21     ------------>AtMYB77      <---------ARR11(3)
         <---------HSFB2a(2)    <--------P                 <---------AHL20(1)
         <---------ANAC58  <---------At4g35610             <---------ARR14(2)
         --------->HSFB2a(2)<-----------RAV1(2)            --------->ARR14(2)     --------->GLK1(1)
         <---------LBD16   --------->At4g35610             <---------ARR14(3)  <---------AtMYB61
         <---------ANAC58  <---------ZAT2                  <-----------ARR10 --------->ALFIN1  >>>>>
        <---------LBD16    --------->ZAT2  <---------At4g35610    <---------REM1(1)    ------>ZmHOX2a(1)
      <---------SPL7    --------->At4g35610--------->At4g35610    ===================RAV       <<<<<
------>GT1--------->LBD16 ----------->RAV1(1)       ----------->GT1      <-----------RAV1(2) <------
 
gcaaaacgtcttccgggaccaagtatgagcagcaggtagcagttgcagctatggactgtcaatatcttggtgttgcacaggtgaggtttccttacacttt  1303800
                                                     <---------LBD16
                             <---------AHL20(2)     ----------->RAV1(2)   <---------HSFB2a(2)
====bZIP_DOF           ------>ZmHOX2a(2)           --------->GLK1(2)      --------->HSFB2a(2)  -----
>>>>>>>>>>>>LFY  --------->ANAC55(2)        <---------ANAC58          <---------GLK1(2)   <---------
<<<<<<<<<<<<LFY  <---------ANAC46           <---------ANAC58  <---------MYB52(1)    --------->ANAC55(2)
----DOF2         <---------ANAC55(2)     <----------DOF2  <------ZmHOX2a(2)    <----------DOF2 -----
 
ccattggtaccttgagaactacgtgatcgtattttaagaacaccctttcttgaaaacctggatcagttatctaggttctcgactttcacttaataaccaa  1303900
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AGI:  At3g04750.1   
Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G29760.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43072.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885)
Range:  from: 1301397    to: 1303382    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At3g04760.1   
Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G09900.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65084.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN67401.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885)
Range:  from: 1303581    to: 1305884    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
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