AthaMap TU-Logo
Search
 
   Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
Go to graphical and table display 

1        10        20        30        40        50        60        70        80        90        100 
                        <---------At4g35610
                        --------->At4g35610
                        --------->ZAT2
                        <---------ZAT2
            --------->MYB46(3)
            ------->GAMYB
            ----------->HVH21
            --------->At1g77200
            --------->DEAR4(1)
            --------->DREB2C(2)
           --------->DEAR3(2)                 --------->LBD16
           --------->MYB46(3)                --------->ANAC58                        <---------ARR11(3)
          --------->MYB52(1)                 --------->ANAC46           ----------->HVH21
          ------>MYB46(1)                    --------->ANAC58          <-----------HVH21
          ------>MYB83 ------>MYB46(1)      <---------LBD16        --------->MYB52(1)--------->ARR11(3)
         --------->MYB55(1)       <---------ANAC46                <---------ALFIN1 --------->ANAC58
        --------->MYB46(3)        <---------ANAC58               --------->MYB46(3)--------->ANAC58
        <---------MYB55(2)     --------->GLK1(1)                --------->SPL7  --------->At4g35610
     <-----------GT1   ------>MYB83     ----------->HVH21     <---------SPL7------->GAMYB
-------->ICU4----------->RAV1(1)  <---------ANAC58           <---------ANAC58--------->At4g35610
------->DOF2--------->DEAR3(1) <---------GLK1(1)             <---------ANAC58<---------At4g35610
 
aaaagattaaacccaccgacagaaccaagctgagatttcttggatgacccggaattagtcgataccgtaccaccggtaacagcagcaagctctcgcctct  1241200
                                                          <-----------HVH21
                                                          ------>NtERF2
                                                         --------->bZIP60(1)
                                                         --------->bZIP60(2)
                                                         <---------bZIP60(1)
                                                         --------->O2
                                                        --------->RAP2.3(1)
                                                       --------->LBD16
                                                       ------>NtERF2
                               <---------ARR11(3)     <---------RAP2.6(2)
                         ------>NtERF2               <---------LBD16         <---------ATERF1(1)
                        --------->ANAC46       <---------ANAC58             <---------WRKY38(1)
                        --------->ANAC58  <---------STY1(1)                 --------->ETT(2)
                   <---------At4g35610    --------->STY1(1)           <---------ANAC58         <----
                   --------->At4g35610   <---------MYB52(1)           <---------ANAC58     <--------
 <---------At4g35610    --------->ANAC58<---------RAP2.6(3)<------NtERF2    <---------ETT(2) <------
 --------->At4g35610    --------->RAP2.6(2)    <---------ANAC58    <----------DOF2       ------>ZmHOX2a(1)
 
gtttagcagacgaactactcgcagaagacgccaatttcttagccgctagggcttgttccggcgtcacatactttcttggtcgacccctcttcctctttac  1241300
                    --------->DEAR3(1)
                  <---------ZAT2
                  <---------At4g35610
                  --------->ZAT2
                  --------->At4g35610
                 --------->DEAR3(1)
             ----------->HVH21
            ------>NtERF2
            <-----------HVH21
           <---------bZIP60(1)
           --------->bZIP60(2)
           --------->DEAR3(1)
           --------->RAP2.3(3)
           --------->O2
           --------->RRTF1(2)
           --------->bZIP60(1)
           --------->RRTF1(3)
           --------->ATERF1(2)
           <---------ATERF1(2)
           --------->RAP2.3(2)
          --------->ORA47(2)
          --------->RAP2.3(1)
          --------->ERF1
          <------NtERF2
          --------->ATERF1(1)                                                  <---------ZAT14
          --------->RRTF1(1)                                                   <---------At4g35610
         <---------ATERF1(1)                                                <------MYB46(1)
         ------>NtERF2                                                      <------MYB83        ----
         <---------RAP2.3(1)                                               <---------MYB46(3) <-----
         --------->ABI4(2)                                                 --------->ALFIN1   <-----
        --------->DEAR3(1)                                         <---------ICU4             <-----
       --------->RAP2.3(1)                  <---------ALFIN1       --------->ATHB12           ------
       --------->ATERF1(1)                 --------->SPL7          --------->YAB1           <-------
      <---------ATERF1(1)              <---------------AtSPL8      <--------HAHB4     <---------ANAC46
     <---------DEAR3(1) <------ZmHOX2a(1)  <-------TEIL           <---------ATHB12 --------->ALFIN1
------>NtERF2<------NtERF2   --------->ARR14(2)          --------->At4g35610<---------At4g35610<----
-----LBD16--------->DEAR4(2) <---------ARR14(2) --------->LBD16   <---------YAB1 <-----------RAV1(1)
--DOF2<---------RAP2.3(1) --------->ANAC58 --------->ZAT18        --------->ICU4 <---------ANAC46
-----GT1<---------DEAR3(1)--------->ANAC58 <---------ZAT14     --------->MYB46(3)<---------bZIP60(2)
 
cggctccatcggcgccgtcacagccgaggacggaactgaatgagggtacaccgcgagagaagatgacccatcattaggctggtgctgtggctgaggctgc  1241400
                                                 --------->ABI4(2)
                                                 <---------MYB46(3)    --------->ALFIN1
                                                 --------->MYB52(2)  <------MYB46(1)
                                             --------->ALFIN1 <-------GAMYB
                                      <---------MYB52(1)     <---------MYB46(3)              <------
                                     --------->LBD16         --------->MYB111(2)            <-------
                                    <---------HSFB2a(2)      --------->MYB55(2)             --------
    --------->DAG2                  --------->HSFB2a(2)     <---------AtMYB61             <------MYB83
   ---------->DOF2                 <---------ANAC46         --------->ALFIN1              <------MYB46(1)
----->LBD16                        <---------LBD16<-------GAMYB      <------MYB83        --------->MYB111(2)
-NtERF2>>>>>>>>>>>>>>>>>LFY      <---------ARR14(2)        <---------MYB52(1)            <---------AtMYB61
----LBD16                        --------->ARR14(2)<--------P--------->MYB52(2)          --------->MYB55(2)
----At4g35610                  <----------DOF2   --------->MYB55(2) <---------AtMYB61    --------->MYB111(1)
--->At4g35610                 <---------ANAC58  --------->ALFIN1 <------MYB46(1)         <---------MYB46(3)
--DEAR3(1)                    <---------ANAC58  <---------AtMYB61<------MYB83         <---------MYB46(3)
-----ANAC46               --------->SPL7     <---------DEAR3(1)<--------P    <---------AtMYB61
 
ggagggaaaagcccattgttggaagatggaacggcgtttccggtagaagcggtggttgctacggtggttggaaggtggtgatggtgctgtagttggtggt  1241500
                                <-------GAMYB  <------MYB83
                               <---------MYB46(3)
                               <-----------RAV1(1)
                             --------->At4g35610       --------->ALFIN1
                             <---------At4g35610       ----------->HVH21
                          --------->At4g35610  <------MYB46(1)            <------MYB83
                          <---------At4g35610  <---------MYB46(3)         <---------MYB46(3)       <
                          <---------ZAT2      <---------AtMYB61           <------MYB46(1)         <-
                         <-----------RAV1(1)  <---------MYB46(3)      <-----------RAV1(1)<----------DOF2
                       <---------At4g35610    --------->MYB55(2)   <---------MYB46(3)   <---------ANAC58
                       <---------ZAT2 <-------GAMYB  <---------At4g35610 <---------AtMYB61    <-----
                       --------->At4g35610   <---------MYB52(1) <---------MYB46(3)     <------NtERF2
                      <-----------RAV1(1)   <-------GAMYB       <-----------RAV1(1)  <---------RAP2.6(2)
     <------ZmHOX2a(1)<XXXXXXXXXXXXXXXXXXXXMIR834   <---------AtMYB61 <---------MYB46(3)<---------ANAC58
---MYB46(3)          <---------RAP2.6(2)   <-----------RAV1(1)--------->At4g35610  <---------MYB46(3)
--AtMYB61           <---------At4g35610    <---------MYB46(3) <---------At4g35610 <---------AtMYB61-
->ALFIN1        <---------MYB46(3)   <-----------RAV1(1)  <---------REM1(1)  <---------MYB46(3)  <xx
 
ggaagtaaggagaagtgagtcgttgctgctgctgctgttgctgttgctgttggtggaggtgatggagctgttgttgttggtggtgatggtggctttcgtt  1241600
                      --------->ANAC58
                      --------->ANAC58
                     <-------TEIL
                    --------->CCA1(2)
        --------------->AGL15
        <---------------AGL15
        <----------DOF2          --------->YAB1
 ------>ZmHOX2a(2)  --------->ARR14(1)
 <-------TEIL      <---------ARR14(2)     --------->HSFB2a(2)
<------ZmHOX2a(2)  --------->ARR11(1)     <---------HSFC1(1)                   <----------DOF2
---------ARR14(2)  --------->ARR14(2)     --------->HSFC1(1)                 ---------->ID1
-----ZmHOX2a(1)   --------->CCA1(2) <---------ICU4                          <-----------GT1
----MYB52(1)    <---------------------WRI1<---------HSFB2a(2)         <------------------------ANAC81
-------->ARR14(2)----------->ARR10  <---------GLK1(2)           <---------AHL20(2)
xxxxxxxxxxxxxxxxxsmallRNA(l2) --------->YAB1 *TSS    <---------ZAT6 <-----------GT1      <---------AHL20(2)
 
aggatccattcctttttagagagatacgcacaaaaataagaatttctagagagagagagttagggattttttttcattttttctttttgcattttttttt  1241700
                                                                                <------ZmHOX2a(2)
                                                                               --------->AGP1
                                                                               <---------AGP1
                                                                               <---------ARR14(2)
                                                                               --------->ARR14(2)
                                                                               <---------ARR11(3)
                                                                               --------->ARR11(3)
                                                                              <---------CCA1(2)
                                 <---------AHL20(2)                          ----------->ARR10
                    <---------AHL20(2)                                     <---------MYB52(1)
               <---------YAB1 <---------AHL20(1)                 <-----------ARR10   <---------HSFB2a(2)
       <---------TOE1(3)      --------->AHL20(1)                 --------->GLK1(2)   --------->HSFB2a(2)
       <---------TOE2(3)     <---------CCA1(2)                  <---------GLK1(2)------>ZmHOX2a(2)
  <----------DOF2<---------AHL20(2)                <---------At4g35610    <-----------HVH21
 
gttttcttttagggttttattattttatacttatatattaatcgataagaaggaagatgatgagatagaatctcaaccgttagatcttctagatttgact  1241800
                                                                                      --------->AHL20(2)
                                                                                  --------->AHL20(2)
                                                                                  <---------AHL20(2)
                                                                                 <---------AHL20(2)
                                            <----------DOF2                      <---------AHL20(1)
                                            <---------DAG2                       --------->AHL20(1)
                                        <-----------GT1                          --------->AHL20(2)
              <---------ANAC46     <----------DOF2                    <------ZmHOX2a(1)
--------->ARR11(3)          <---------CCA1(2)     <-----------GT1--------->HSFB2a(2)  <---------AHL20(2)
<---------ARR11(3)    ---------->DOF2  <-----------GT1           <---------HSFB2a(2)  <---------ICU4
 
taagatgtttttgacttatgtgtgttaaagcatctcttctttttacccttttttatctgtttttatttctcgaggaaacagaaatttaattttttcagag  1241900
                                                                         <---------ARR14(2)
                                                                         --------->ARR14(2)
                                                                        <---------CCA1(2)
        <------ZmHOX2a(2)                                               --------->GLK1(1)
       --------->ARR11(3)                                            >>>>>>>>>MYB98
       <---------ARR11(3)           <----------DOF2                 <-----------GT1              ---
   ---------->DOF2               <-----------GT1             <---------WOX13(1)       ---------->DOF2
 --------->ANAC58              <-----------GT1   XXXXXXXXXXXXXXXXXXXX>MIR397B------>ZmHOX2a(1)  <---
 --------->ANAC58   <---------DAG2  <---------DAG2           <--------P <---------GLK1(1)       ----
 
ggaaacgaaagatcactcactcaccttctcagtttttcacttttctctagtcatttagtacatggttgatttaacatatcctccaatttcaaagaaacca  1242000
      --------->ATHB12
      ----------->GT1
      --------->YAB1                 --------->ALFIN1
     --------->ICU4     --------->DAG2
    <---------WOX13(1) ---------->DOF2                     <----------DOF2
------>ATHB12       --------->YAB1   ----------->GT1       <---------DAG2         --------->ATHB12
------YAB1         <---------YAB1  <---------ANAC46   <---------GLK1(1)          <---------YAB1
----->ICU4 ---------->DOF2  <---------WRKY12 ---------->DOF2        <----------DOF2             ----
 
tgatttgaatgattaaaagaaaatgataaagtcaatgggggtgtaacaaaaagattgaactcctttttcaactttgcattcgtcaacattggtattcaac  1242100
<- Previous    Next ->

AGI:  At3g04590.1   
Description:  DNA-binding family protein. similar to DNA-binding protein-related [Arabidopsis thaliana] (TAIR:AT5G28590.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN72947.1); contains InterPro domain Protein of unknown function DUF296 (InterPro:IPR005175); contains InterPro domain HMG-I and HMG-Y, DNA-binding (InterPro:IPR000637)
Range:  from: 1238859    to: 1241646    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

    printer-friendly version