Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100       <---------AHL20(2)    <---------AHL20(2)    --------->AHL20(2)    --------->AHL20(1)    <---------AHL20(1)                 --------->GLK1(1)                     <---------YAB1   --------->AHL20(2)                  <---------GLK1(1)                   --------->YAB1 >MYB46(1)                       ------>MYB83                         <---------ATHB12             -- >MYB83   <---------YAB1         --------->MYB52(1)           <---------ARR14(2)              ------- --MYB59<---------ICU4           ------>MYB46(1)              --------->ARR14(2)              -------   ccaaaattaatttttatttcaaaaccatctaaaccaaacagaaatcacatgtaatttcaaacccgaaccgaaatcaattgtcatttcatcaaaaccatgt  1166900                                                                                      <---------DAG2                                                                                   <-----------GT1                                                                                 <----------DOF2                                                                                 <---------DAG2                                                                         --------->ANAC58                                                                         --------->ANAC46    <-------                                                                         --------->AtLEC2  <---------AHL20(2)                             --------------->AGL15                       --------->ANAC58 <---------AHL20(2)                             <---------------AGL15                    <-------TEIL--------->ZAT14           >>>>>>>>>ARR2     ------->GAMYB  ------>ZmHOX2a(1) <---------YAB1  <---------ALFIN1 -------->DOF2     <-----------GT1        --------->YAB1    ---------->DOF2 ----------->RAV1(1) ---->GT1<---------YAB1    --------->At4g35610  --------->AHL20(2)    <-----------------------TaNAC69(2) -->AtLEC2 >>>>>>>>>ARR1   <---------At4g35610  <---------AHL20(2)   --------->CCA1(2)<----------DOF2   aaaaagcttctacgattgttttaacttgcaactgaaaatagcaatcctaatttatcaacagataaagatagatacatgcaacactttacttttttatttt  1167000                                                                                             <-------                       <---------YAB1                                                        <-------              <---------YAB1                                           <------ZmHOX2a(2)     ------>ZmHOX2a(1)            <---------ICU4                                     <---------ANAC58          <---------ARR11(3)            --------->ATHB12                                   <---------ANAC58      --------->YAB1           <---------YAB1          <----------ID1         <-----------RAV1(1)  <-----------GT1   <--- --YAB1    --------->ICU4    <---------AtMYB61           ------->TEIL  =============================HOX2a_HOX2a   tggttttgagaagatgattacagttgtgattttggtggagacaaaaatgtccatctctgtatgttgctagccgatcaaattttacattcaaaatcctttt  1167100                                   --------->ARR11(3)                                   --------->AHL20(1)                           <----------DOF2                                                  <--------                          --------->TOE2(3)                                                --------->ATHB12             --------->AHL20(2)    <---------AHL20(1)<---------GLK1(1)                    <---------YAB1     --------->AHL20(2)<---------ARR11(3)            --------->GLK1(1)      ---------->DOF2--------->ATHB51 ---DOF2  --------->AHL20(2)    --------->YAB1     --------->ATHB12        XXXXXXXXXXXXXXXXXXX>MIR156H --DAG2  --------->AHL20(2)------>ZmHOX2a(1)      <---------YAB1       <---------YAB1     --------->ICU4 ------YAB1  <---------AHL20(2)<---------YAB1   --------->YAB1 ---------->DOF2  ---------->DOF2    <-   tgataaaaaaaataaaaaaattcaaaatcctttatgatatattgggcctaagatgatttccaaaaaaaagatgatgagaaaagaaagagaacattattgg  1167200               --------->RAP2.6(3)           --------->AHL20(2)           <---------ICU4                                                                       <----           --------->ATHB51                                                                     -----           <---------AHL20(2)                 ------------>CBF                                 <-----          --------->AHL20(2)              --------->ZAT2                                       <-----          <---------AHL20(2)              <---------ZAT2                                       <-----       <---------AHL20(2)                 <---------At4g35610                                  ------       --------->AHL20(2)               <---------WRKY12                                       ------   <---------ZAT6                     <-----------HVH21                                        ------   ----------->GT1      --------->AHL20(2)--------->At4g35610                                <------NtERF2  <---------YAB1<---------RAP2.6(2)  --------->bZIP60(2)                           <-----------GT1--- <------------CBF ------>NtERF2      --------->ANAC46                          ----------->TBP<------ ----CBF  <---------AHL20(1)       <-----------RAV1(2)                        <---------ARR14(2)----- ---------DOF2<-----------GT1---------->DOF2<---------ZAT18     --------->TOE2(3) *TSS     <---------DEAR3(1)   gcttattgttaaattatttcggcccataaaataaagtccaggtcagctcacaatacatgaagaaaaccctagttcaagcgtatataaaccctctcggcgc  1167300 --NtERF2 ---->ATERF1(1) ----ATERF1(1)                                                                                     <- ----DEAR4(2)                                                                                      <- ----At4g35610                                                                                     -- --->At4g35610                                                                               -------- --->ABI4(2)                                                                                ------>MYB83 >NtERF2                <---------At4g35610                                                 ------>MYB46(1) --->NtERF2<----------DOF2                                                                --------->TOE2(3) ---DEAR3(1)            --------->At4g35610          ----------->GT1                      <---------MYB59 ---->RAP2.3(1)         <---------ZAT2     <-----------HVH21                         <----------DOF2   tgccattgaaactctttcaaggagagagctgctactctgcaaccatgtcgaagcgaggtaaaaaaacgtttcttcatctctaattcgcttaacctaatct  1167400                       ------>ZmHOX2a(1)                   <---------ARR14(2)                   --------->ARR14(2)                                                               -                   --------->ARR11(3)                                                              <- --------ZAT14    <---------CCA1(2)                                                            ------ --------ZAT18  --------->YAB1                    <----------DOF2                              <----- ------->ZAT14------->TEIL                     <-----------GT1      <-----------GT1    ---------->DOF2 ->GLK1(2)<---------TOE1(2)          <-----------GT1     --------->YAB1--------->TOE2(3)    ---------   gtgtacatctcgtatgaatcatatcctgttttcgcttattttcttcatttcactttcaatgacaatggttttaccctaatttctattagtaaagcttctg  1167500                                                  ----------->GT1                                                <------ZmHOX2a(2)                                               --------->ARR14(2)                                               <---------ARR11(3)                                               --------->ARR11(3)     ------->TEIL                              --------->AGP1  <---------YAB1                        <---------ZAT6 -------->YAB1                   <--------P    <---------AGP1                              <---------ARR14(2) -----ZmHOX2a(2)                 <---------WOX13(1)     <----------DOF2                    --------->ARR14(2) --->HSFB2a(2)                  <-------GAMYB  <---------ARR14(2)                         <------ZmHOX2a(1) ----HSFB2a(2)                 <---------MYB46(3)------>ZmHOX2a(2)                     <------ZmHOX2a(1) >GLK1(2)   <---------ZAT6  <----------DOF2  ----------->ARR10                   <------ZmHOX2a(1)---   gatcatgaatattagtcttatatgtctctactttggttgatagtgtttagatctgtaacttttgtgtttgttttttgtgaataggaagaggaggaacctc  1167600                                                                   --------->At4g35610                                                                   --------->ZAT2                                                                --------->LBD16                                                              <---------LBD16                                                      ----------->HVH21                                                    --------->At4g35610                                                    <---------At4g35610   ------->TEIL               <-----------HVH21                    --------->ZAT2 <---------ZAT2              --------->bZIP60(1)            --------->ZAT14 --------->MYB52(1)     <---------ICU4            <------ZmHOX2a(1)                <---------ZAT14<---------ALFIN1 <----------DOF2         <-----------RAV1(2)         <------NtERF2<---------ZAT14  <---------At4g35610     <-------GAMYB      xxxxxxxxxxxxxxxxxx>smallRNA(fl3)--------->MYB46(3) --------->bZIP60(1)--------->TOE2(3) -------->GT1 <---------bZIP60(1)    <---------At4g35610 <---------bZIP60(1)--------->TOE1(3) -------   tggtaacaagttcaggatgtcactgggtcttccagtggcagccactgtgaactgtgctgacaacaccggagctaagaacctttacatcatttcggttaaa  1167700                                                                                                <----                                                                                     --------->LBD16                                                                                    --------->ANAC46                                       <------MYB46(1)                          <---------GLK1(1)                                       <------MYB83                             --------->GLK1(1)                                    <-------GAMYB                              <---------ARR11(3)                                   <-----------RAV1(1)                         xxxxxxxxxxxxxxxxxxxxxx                                   --------->ALFIN1                      --------->ANAC58       <----                               <---------ANAC46                     --------->DAG2 <---------LBD16                               <---------ANAC58                   ---------->DOF2------>ZmHOX2a(2)                    <---------MYB52(1)<---------AtMYB61    <---------ZAT6--------->ANAC58      <-----               <-----------GT1 <---------ANAC58          xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  ------- --->DOF2 xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)--------->CCA1(2)   <---------TOE2(3)====================   ggaatcaagggtcgtcttaaccgtttgccatcagcgtgtgttggtgatatggttatggctactgttaagaaaggtaagcctgatctccgtaagaaggtgc  1167800  Previous    Next  AGI:  At3g04400.1    Description:  EMB2171 (EMBRYO DEFECTIVE 2171); structural constituent of ribosome. Identical to 60S ribosomal protein L23 (RPL23C) [Arabidopsis Thaliana] (GB:P49690;GB:Q8L8P0;GB:Q9SDB5); similar to 60S ribosomal protein L23 (RPL23A) [Arabidopsis thaliana] (TAIR:AT1G04480.1); similar to 60S ribosomal protein L23 (RPL23B) [Arabidopsis thaliana] (TAIR:AT2G33370.1); similar to ribosomal protein L17 [Castanea sativa] (GB:AAK25758.1); contains InterPro domain Ribosomal protein L14b/L23e; (InterPro:IPR000218) Range:  from: 1167282    to: 1168665    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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