Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                  --------->LBD16                                               --------->ANAC58                                               --------->ANAC46                                               --------->ANAC58                                              ------>ZmHOX2a(2)                                              <---------LBD16                                             ==========================HOX2a_HOX2a                  ------>MYB46(1)            <------ZmHOX2a(2)                  ------>MYB83              --------->ARR14(2)                --------->MYB46(3)          <---------ARR14(2)                <---------MYB55(2)      <---------HSFB2a(2)           ------->TEIL            --------->MYB46(3)          <---------LBD16             <---------SPL7          <------ZmHOX2a(1)             --------->HSFB2a(2)        <---------ANAC58             -----     ----------->RAV1(1)          <---------TOE1(2)                <---------ANAC58         ------>ZmHOX2a(2) <-------MYC3   <---------MYB46(2)------->TEIL=========================HOX2a_HOX2a         <---------GLK1(1) ------->PIF5   <---------MYB111(2) <---------DAG2              ===================================HOX2a_HOX2a ------->MYC2   --------->AtMYB61<---------ALFIN1 ----------->RAV1(1) --------->SPL7   ------>ZmHOX2a(1) <-------MYC2   <---------MYB111(1)--------->HSFB2a(1)          ------>ZmHOX2a(1)<---------ARR11(3) <-------PIF5  --------->ANAC46--------->ANAC58<---------ANAC55(2) --------->YAB1--------->ARR11(3) ------->MYC3--------->AtMYB61 --------->ANAC58--------->ANAC55(2)--------------->AtSPL3  <---------ARR11(3)   gcacgagcaccaggaccaccaaacttcttcgactcgcaccttctcggatccgcaacaagaagagtcctatcgtacctcatcaagatgtccttgatctcct  1113300                                                                                                    <                                                                                                  <--                                                                                                 <---                                                                                                -----                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                               <-----                                                                                              <------                                                                                              -------                                                                                           --------->ABI4(1)                                                                                           ------>NtERF2                                                                                          --------->AtMYB61                                                                                          ------->GAMYB                                                                                          --------->DEAR3(1)                                                                                          --------->DREB2C(2)                                                                     ----------->ARR10    ===========                                                                     --------->WRKY38(1)  <---------ALFIN1                               --------->ANAC58                      --------->WRKY12    --------->MYB46(3)                               --------->ANAC46                   <---------ANAC58       --------->DEAR4(2)                       <---------HSFB2a(2)                        <---------ANAC58     <---------ALFIN1                       --------->HSFB2a(2)                        <---------ANAC46     --------->AtMYB61      <---------At4g35610<---------MYB52(1)<----------DOF2 <---------ANAC46           --------->MYB46(3) ->ZmHOX2a(1)     ------->TEIL --------->ANAC58         ----------->HVH21           <-----------GT1<-   tcttcgactgctcatcaacgtacttctggtagtaagcaacgagggccttagcgatactctgacggattgcgtagacccgagatgtgttaccaccgcccgt  1113400                                                                              ------>ZmHOX2a(2)                                                                             <---------GLK1(1)                                                                             --------->GLK1(1)                                                                             <------ZmHOX2a(2)                                                                            <---------AGP1                                                                            <-----------ARR10                                                                            --------->GLK1(2)                                                                            <---------ARR14(3)                                                                            --------->ARR11(3)      ------>ZmHOX2a(2)                                                     <---------ARR14(2)     <------ZmHOX2a(2)                                                      --------->ARR14(2)    --------->ARR14(2)                                                     <------ZmHOX2a(1)    <---------ARR14(2)                                         ------>ZmHOX2a(2)    <---------GLK1(2)                                          ===================HOX2a_HOX2a  --------------->ANT                                         ====================HOX2a_HOX2a <---------ANAC55(2)                                          <------ZmHOX2a(2) --------->ANAC55(2)                                         <---------AGP1========================== --------->ANAC58                                            --------->ARR14(3) --------->ANAC58                                            <---------ARR14(3) ---------LBD16                                 ====================================HOX2a_HOX2a -------SPL7                                    =====================================HOX2a_HOX2a --------HVH21                                  =====================HOX2a_HOX2a ------>HVH21                             <------ZmHOX2a(1)  --------->ARR11(3) ->PIF5              --------->LBD16      ============================HOX2a_HOX2a ------HVH21         ------>NtERF2        ===========================HOX2a_HOX2a                   <- --->LBD16          <---------DEAR3(1) --------->LBD16       <---------ARR14(2)                    -- --PIF5 ------>ZmHOX2a(1) --------->MYB52(1)    ======================HOX2a_HOX2a                <--- ---TGA1a          <---------LBD16    --------->LBD16        --------->ARR14(2)          ---------->DOF2 -->TGA1a       --------->At4g35610  <---------HSFB2a(2)     <---------ARR11(3)     <---------ANAC46 ===MYC_MYB <-----------HVH21  --------->ALFIN1 <------ZmHOX2a(1)        <---------TOE1(2)--------->DAG2 --------ANAC46 <---------At4g35610  --------->HSFB2a(2)   ----------->ARR10<---------ARR11(3)   ----   ggcacggatcctcatgtcaactccggcgaaacggtgtttcccgaggagaaggactggctcgaagatcttgaatcggaggatctctggctgataaagctcg  1113500             <XXXXXXXXXXXXXXXXXXXXMIR864-5P           <---------At4g35610             --------->At4g35610                      <-------GAMYB             <---------At4g35610                     <---------MYB46(3)          --------->WRKY12                         <---------At4g35610          --------->WRKY38(1)                      <---------ZAT14         <---------MYB52(1)                   ----------->HVH21                                     <   <---------SPL7                           <------MYB83                                            < =====HOX2a_HOX2a                           <------MYB46(1) ------>NtERF2 --------->LBD16          <- --------DEAR3(1)                          --------->MYB111(1)           --------->ANAC46          <- ---->ZmHOX2a(2)    <---------ICU4         --------->MYB46(2)            <---------HSFB2a(2)      <-- ------ARR14(2)     --------->YAB1        <---------MYB55(1)<---------RAP2.6(3)         <---------GLK1(2) ----->ARR14(2)    <---------ATHB12<---------MYB52(1)<-----------RAV1(1) --------->HSFB2a(2)     <---   atcggcgaaccgttgagcttaatcatgcccgagccccgtttgcagtaggtgactgctgttgccgtcttcttccttccgaaacattgaacagactctttcg  1113600         <------NtERF2       --------->ANAC58       --------->ANAC58       --------->ETT(2)    <---------ANAC58    <------MYB83    <------MYB46(1)    <---------ANAC58   --------->MYB59   <------MYB83   <---------MYB46(3)   <------MYB46(1)   --------->MYB55(2) <--------P <---------MYB52(1) -------GAMYB  <---------ANAC58               <---------AtLEC2                                    <-- ---------MYB52(1)                    <---------DAG2                                             ---- --------MYB46(3)                     <----------DOF2                                           <---- --------DEAR3(2)            <---------YAB1  --------->ZAT14         ----------->GT1          <------ -------DEAR3(1)          <---------YAB1     <---------ZAT14      *TSS                     <---------TOE1(3) ------LBD16   <---------ANAC58    ---------->ID1           <---------ANAC55(2)         <---------MYB52(1)   ccggttgggtcgccattgctagggttttatgatttttgtgctttttctgcagggatttgattacatgagaagagcaaaaaactctaatccgttaagcttt  1113700                  --------->At4g35610                                --------->ATHB12                  <---------At4g35610                               --------->ICU4    <---------WRKY45                                                <---------YAB1    <---------WRKY38(1)                                    <-----------HVH21    <---------WRKY12                                      ----------->GT1   <-----------GT1   --------->WRKY18(1)                       ----------->GT1   --------->ANAC55(2) ----------CBF  ------>ZmHOX2a(2)           <---------TOE2(3)  <---------ANAC55(2) ----->ATHB12--------->ATHB12         <---------AHL20(2)<---------ANAC58   <---------YAB1        ---- -----YAB1  <---------YAB1            --------->AHL20(2)<---------ANAC58<---------AHL20(2)      <---- ----DOF2--------->ICU4              --------->AHL20(2) <---------ANAC46--------->AHL20(2)    <------   tattggtcaacatgatgatcggctgaatttgaaggcccataaaattagggtaactatggcctgttacatgatgatttattactacatagcttagattaac  1113800                            --------->TOE2(3)                           <---------ANAC46                          <---------At4g35610                   ------>MYB46(1)                                  ------->TEIL                   ------>MYB83                                <---------ANAC46                  --------->MYB52(1)                           <---------ANAC58     <---------GLK1(1)  <xxxxxxxxxxxxxxxxsmallRNA(i)           <---------ANAC58 --->GAMYB       ------->GAMYB                             <-------GAMYB -----LBD16     <---------MYB52(2)           ----------->GT1<---------MYB52(1)--------->MYB46(3) -----GT1       --------->MYB46(3)  <---------YAB1     <----------DOF2  ----------->GT1 <------ZmHOX2a(1)   cggctagatttctggttaaccaacgggtttcgtcaatttcgattagatggaaaaacactttcgttgtttgcatctggttaacaatcgataggaattgata  1113900                                                                   <---------AHL20(2)                                                                 --------->AHL20(2)                                                                 <---------AHL20(2)                                                             <---------AHL20(2)                                                             --------->AHL20(2)                                                           --------->AHL20(2)                                                           <---------AHL20(2)                                                         <---------AHL20(2)                                  <---------MYB52(1)     --------->AHL20(2)                     --------->At4g35610               --------->AHL20(2)            --------->ARR11(3) ------>ZmHOX2a(2)      <---------ARR11(3)        ---------->DOF2       <------ZmHOX2a(2)       <---------AHL20(1)                        -----   --------------->AGL15     <---------ARR14(2)       --------->AHL20(1)       --------->ANAC55(2)   <----------DOF2   <---------At4g35610      <---------ATHB12 <---------AHL20(2)      <<<<<<<<<<<<<<   <---------------AGL15     --------->ARR14(2)  <---------YAB1--------->AHL20(2)   ----------->GT1   agaagctttataaagaaattgggagctaaacgatccgttttggttcaaatgatcaatatatatatatatatatatgttttcatgtaatgttacattggga  1114000             <---------MYB52(1)            --------->LBD16          <-----------------AGL1                                   --------->At4g35610     ------->MYC3                                                  --------->ZAT2     ------->MYC2                                                  <---------ZAT2     <-------PIF5                                                  <---------At4g35610     <-------MYC2                                     <---------AHL20(2)     <-------MYC3                                     --------->AHL20(2)     ------->PIF4                                   --------------->AGL15     <-------MYC4                                   <---------------AGL15     <-------PIF4                          <----------DOF2       --------->ANAC46     ------->PIF5                        <---------At4g35610  --------->ZAT18 <---------ZAT18                         <---------ZAT2       <---------ZAT14 --------->YAB1     ---- ---->ARR11(3)                           --------->At4g35610  --------->ZAT14<---------ATHB51<------- <<<LFY   <---------LBD16                --------->ZAT2   <---------------AtSPL8 --------->YAB1 <----   tattgcacatgctccggtaatggaaaacagagataacacagccagctttgttttatatatatagtacacagctcaaacaataataatcttctctagctct  1114100                                                       <---------ARR14(2)                                                       <---------TCP16(1)                                                       --------->ARR14(2)                                                     --------->LBD16                                                    <---------ANAC58      <---------YAB1                                <---------ANAC58                                <     <-----------GT1                                <---------ANAC46         ========================   <---------AHL20(2)                              <---------LBD16     <-------GAMYB                <   --------->AHL20(2)                       <-----------GT1            ============================== ----->YAB1                             <---------AHL20(2)             <---------At4g35610          - --AGP1                            <---------MYB52(1)------>NtERF2     --------->At4g35610          - -----YAB1       <---------At4g35610   <---------AHL20(2)  ------>ZmHOX2a(1) <----------DOF2    <----   gataatttatcaatatttctgctactaattctcttcggttttttatttacaatgccgggtcctcatgtgtttcagttgtctttccctccttgtttatctg  1114200  Previous    Next  AGI:  At3g04230.1    Description:  40S ribosomal protein S16 (RPS16B). Identical to 40S ribosomal protein S16-2 (RPS16B) [Arabidopsis Thaliana] (GB:Q9M8X9); similar to 40S ribosomal protein S16 (RPS16C) [Arabidopsis thaliana] (TAIR:AT5G18380.1); similar to unknown [Populus trichocarpa] (GB:ABK92774.1); contains InterPro domain Ribosomal protein S9; (InterPro:IPR000754); contains InterPro domain Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721) Range:  from: 1112997    to: 1113666    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g04240.1    Description:  SEC (SECRET AGENT); transferase, transferring glycosyl groups. Identical to Probable UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase SEC (SEC) [Arabidopsis Thaliana] (GB:Q9M8Y0); similar to SPY (SPINDLY), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT3G11540.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO38782.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ55500.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ60737.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Range:  from: 1113941    to: 1120879    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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