Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100              ------>MYB46(1)       <-----------GT1 <------MYB83 <------MYB46(1) -------->MYB55(2) ---------MYB46(3) --------ANAC46                                            ------>NtERF2 ------->ALFIN1                                      <-------GAMYB --------MYB55(1)                                   --------->ALFIN1                    ----------->HVH21 ------ANAC46----------->RAV1(2)               --------->LBD16                        <---------MYB46(3) -----DEAR3(1) --------->LBD16            --------->ATERF1(1)                       <-------GAMYB --->ZAT18  ------>MYB83                 <---------ATERF1(1) <-----------RAV1(2)  <---------TOE2(3) -   ggtgggttttgacctccctgagcaaagtctaagcgagcgagggagactccgagggtgttgaggccagggattttgttgacatctacggttgtgacattag  1104200                                                                                    --------->GLK1(2)                                                               <-----------------AGL3                                                               <-----------------AGL2                    <---------ANAC46                        <---------MYB52(1)      <---------ARR14(2)                    <---------ANAC58                       <-------GAMYB   ------>ZmHOX2a(2)                    <---------LBD16                        <---------RAP2.6(3)      --------->ARR14(2)            <---------AtMYB61                      --------->ATHB12      --------->ARR14(2)          <------MYB46(1)                          <------------ATHB5    <---------ARR14(2)          <------MYB83                             -------->ATHB1        <---------ARR11(3)         --------->ALFIN1                          <---------ICU4        <---------AGP1         --------->MYB111(1)                      --------->ICU4<---------------AGL15           -----         <---------AtMYB61            --------->LBD16      --------->At5g28300     <---------GLK1(2)         --------->MYB111(2)    <---------ANAC58  <---------ATHB12       --------->ARR11(3)     -----         <---------MYB46(3)     <---------ANAC58  <---------YAB1--------------->AGL15  <-----------GT1    <------ZmHOX2a(1)   <---------DEAR3(1)      --------->GLK1(1)       <---------CCA1(2)------------ -------->TOE1(2)   <---------ANAC58 --------->LBD16      <---------MYB46(3)<----------DOF2     -----   aaccgaggaagttggtggtgtttcgggcgatgttgagtcccgaataagagaaatcattggccgttactgattttggatctttacagaatttgccattcac  1104300                                    --------->YAB1       --------->ANAC58            <---------ATHB12     --------------->AtSPL8       --------->ANAC58            --------->ICU4       <---------------AtSPL8    <---------AHL20(2) ---->ANAC46                      <---------TOE2(3)   --------->YAB1              --------->AHL20(2) ---->ANAC58                    --------->ICU4       <---------YAB1           --------->AHL20(2) ----->AGL1                 --------->ZAT18----------->GT1                  --------->AHL20(2)    --- ---->ANAC58      ---------->DOF2--------->YAB1   <---------YAB1     ------>ZmHOX2a(1)        <------   gaaaactgcaagaaaaaccaaaaagaaaacagcactaatgatgttttgtaatttgattatagtactaaatcctttccaaaaaatataaatatagtagtga  1104400                                                                           ---------->DOF2                                                                   <------NtERF2                                                                  ------>NtERF2                                                                  --------->RAP2.6(2)                    --------->ANAC46                              <---------ATERF1(1)                  --------->ZAT6                                  <---------RAP2.3(1)            <------ZmHOX2a(2)                                    <---------ANAC46            --------->CCA1(2)                                    <---------DEAR3(1)           <---------ARR14(2)                                    <---------ATERF1(2)           --------->ARR14(2)                                    --------->ATERF1(2)           --------->AGP1                                       --------->RAP2.6(3)           <---------AGP1                                       --------->ATERF1(1)           <---------ARR11(3)                                  ------>NtERF2                      ---        --------->HSFB2a(2)                                    <---------ATERF1(1)                ---     --------->GLK1(2)--------->ZAT14          --------------->AGL15 ----------->RAV1(1)  --------->ARR14(2)    <---------GLK1(2) <---------ZAT14          --------->TOE2(3)<------NtERF2             <---------ARR14(2) ------->DOF2------>ZmHOX2a(2)          <---------ARR11(3)    <---------DEAR3(1)         <------ZmHOX2a(1) ---ZAT6<---------HSFB2a(2)          <---------HSFB2a(2)    <---------At4g35610          ============   taaagagattctagatccgaacactaaactagctatattcgagataatacctctattagtttcgctggcggcaacacaaaagtcttgaagaggatttgga  1104500         <-------TEIL                                        ---------->DOF2                ---------        --------->CCA1(2)                              --------->ANAC58           <---------AHL20(2)       <---------ARR11(3)         <---------TOE2(3)    --------->ANAC58         <---------AHL20(2) -------->GT1             --------->ANAC58         --------->ANAC58           <---------AHL20(2) --->ZmHOX2a(2)           --------->ANAC58         --------->ANAC58          <---------AHL20(1) ====HOX2a_HOX2a        ---------->DOF2            --------->ANAC46       --------->YAB1    ---------   tcgtaacaagatacaaatgaagttgctaaagccaataagataacttgagttacaagcaagcgaagaagcacttccatcatatatttttttctaataaaaa  1104600                                                                                  <---------AHL20(2)                                                                              <---------AHL20(2)                                                                             --------->AHL20(1)                                                                             <---------AHL20(1)                                                        --------->ZAT18      --------->AHL20(2)                                                        ----------->HVH21    <---------AHL20(2)                                                      <---------At4g35610    <---------ARR11(3)   <---------ANAC58                               --------->CCA1(2)          --------->ARR11(3)   <---------ANAC58                              <---------ARR14(2)         --------->AHL20(2)   <---------ANAC46                              --------->ARR11(3)     --------->AHL20(2)  --------->ATHB12                               --------->ARR14(2)   --------->TOE2(3) >YAB1  *TSS                      --------->At5g28300 --------->At4g35610<---------AHL20(2)    <----- >AHL20(2)    <---------ZAT6   --------->ZAT18  <------ZmHOX2a(1)   <-------TEIL<---------AHL20(2)   aacttgagtggaaagagtgttagataagaagaacgcgctaaatgtatagaggatatagctcacagggagattcattaaatatatttttatgtcatttctt  1104700                                                                               <---------YAB1                                                                         <---------YAB1          <---                                                                       --------->YAB1            ----                           <---------At4g35610                         -------->HAHB4           -----                           --------->At4g35610                         <---------ICU4          ------                        --------->At4g35610                        --------->AHL20(2) <---------ANAC58                        <---------At4g35610             <---------AHL20(1) >>>>>>>>>ARR1      <<<<<<<                       <-----------RAV1(1)              --------->AHL20(2) >>>>>>>>>ARR2      <------                 ------>MYB83                          --------->AHL20(2)--------->ICU4<---------WOX13(1)                 ------>MYB46(1)                     --------->TOE1(3)--------->ICU4  <---------ANAC58                --------->WOX13(1)    <---------AHL20(2)<---------AHL20(2)--------->ATHB12  --------- -----DOF2  --------->ANAC46     ------>ZmHOX2a(2)   --------->TOE2(3)<---------ATHB51<---------AtLEC2   tgttcaagtcaaatacaccaatctactgctgctgatctaaatatttgagctataacattaaattttgaagtaattatgattgtgatttgcttgacaatca  1104800    --------->ANAC46 --------->ZAT14 --------->ZAT18 <---------ZAT18 <---------ZAT14 <-------TEIL                                                                                   ----- ------------AtSPL8                                                                     ---------->DOF2 ----------->AtSPL8                                                                  --------->ANAC58 ----->DOF2                                                                          --------->ANAC58 --->YAB1                                         <---------HSFB2a(2)               ------->TEIL----- <<ARR2                                           --------->HSFB2a(2)            <---------YAB1 ----- ---ATHB12                        --------->AHL20(2)                           --------->YAB1 <------ >WOX13(1)          ---------->DOF2      <----------DOF2       --------->YAB1 <---------YAB1---------   aagtacacactaacatacaactaaaagcattagccataaatttcttttagttttagaagttagaagcatcatacatttttatcatgaacgtaaaccacac  1104900        --------->ICU4  --------->ZAT6 ---->ANAC58                  --------->LBD16                                                     <-- ---->ANAC58                  --------->At4g35610             <---------ANAC46<---------AHL20(2)  --- ---->ANAC46                 --------->ANAC58                 ----------->GT1--------->AHL20(2)   <-- ---ALFIN1                   --------->ANAC58        <----------DOF2   <---------YAB1            <--- >AtMYB61       ----------------->AGL2           --------->YAB1      ----------->GT1         <-------   acaaactctactgattaaaccaaaattagacccgctaactattcgattctatcatcttttagttttgtgaattgtgatattatatagttcaactaggtca  1105000                    --------->LBD16                             <---------HSFB2a(1)                <-                   --------->ANAC58                             --------->HSFB2a(1)           -------             --------->KAN4(2)                                  --------->HSFC1(2)            ------- ---------ARR10    --------->ANAC46                             <---------HSFC1(2)            <------ ------>ARR11(3)   --------->LBD16                 <---------AHL20(2)                         <------ -------ARR11(3)   --------->ANAC58               --------->AHL20(2)      <-----------GT1     ------- ------CCA1(2)   <---------LBD16      ------>ZmHOX2a(1)      <------ZmHOX2a(1)               <------- ----HVH21 ------->TEIL    --------->AtMYB61      <---------AHL20(2)     <---------AHL20(2) <--------   tatctcatcgatgaacataccccgaaacaccaccaatttcctctgttcgtaattaaatatcgaggaaaattcgattttatcatctaattcattcccacgg  1105100  Previous    Next  AGI:  At3g04200.1    Description:  germin-like protein, putative. Identical to Germin-like protein subfamily 1 member 6 precursor [Arabidopsis Thaliana] (GB:Q9M8X6); similar to germin-like protein, putative [Arabidopsis thaliana] (TAIR:AT3G05950.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17608.1); contains InterPro domain RmlC-like jelly roll fold (InterPro:IPR014710); contains InterPro domain Cupin 1; (InterPro:IPR006045); contains InterPro domain Germin; (InterPro:IPR001929); contains InterPro domain Cupin, RmlC-type (InterPro:IPR011051) Range:  from: 1103623    to: 1104608    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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