Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                      --------->ANAC46                                                                ------>NtERF2                                ---------->DOF2            ------->MYC2                         --------->AHL20(2)                <-------MYC3                         <---------AHL20(2)                ------->MYC3                         --------->AHL20(1)                <-------MYC2                        <---------AHL20(2)              <---------ALFIN1                        --------->AHL20(2)             --------->MYB46(3)                  <---------At4g35610                     --------->AHL20(2)               ------->TEIL  --------->ANAC58       --------->At4g35610                    --------->AHL20(2)             <---------MYB52(2)                  ==============                  ------------------------>ANAC81--------->MYB52(1) --------->ANAC58   <------ZmHOX2a(1)   tagcaaaatggctaagagaaaaataaaaaaattgaaaagaagaaatcgaagaaacgaaccacatgctgccacgatacttgagagtataaggaccgctctc  939400                               <XXXXXXXXXXXXXXXXXXXXMIR3440B-3P                              <---------ANAC58                              <---------ANAC58                --------->At4g35610                        --------->TOE1(3)                  ---------->DOF2                        --------->TOE2(3)              ---------->DOF2                              -                      ------->TEIL  <---------DAG2  --------->AtLEC2                   --------->SPL7       <------ZmHOX2a(2)<---------DAG2              --------->ANAC58         ----------->HVH21   <--- --------->ZAT18     <-----------GT1<----------DOF2 --------->ANAC58---------->DOF2 <---------DEAR3(2) =============HOX2a_HOX2a   <---------YAB1         --------->WOX13(1)    --------->ZAT18         ----   aagagcacgatcgaagtggctatgaaccttatgcttccctttaccactctgatcaagcaaagaaagctcaaaaagagccctaacatcggtaccatcgcta  939500                                                       <------ZmHOX2a(1)                 ------------           --------->MYB52(1)                       --------->YAB1                      <---------DEAR3(1)        --------->YAB1                      <---------ANAC58                          --------->MYB52(1)       <---------ATHB12                     <---------ANAC58                          ------>NtERF2  --------->ANAC58                       <---------ARR14(2)                          ----------->HVH21  --------->ANAC58                       <---------GLK1(2)                           --------->DEAR3(1) --------->DOF2                          --------->ARR14(2)                       ------->GAMYB ------STY1(2)                          <------ZmHOX2a(1)                        --------->MYB46(3) ----->At4g35610                    ------>ZmHOX2a(1) <---------YAB1        --------->YAB1--------->At5g28300   gctaaagcaatgaaaacggagacataagccgaattatcctcaggattcttgccatcaggatagaaatagatagcccattgataacccccgacggtgaaag  939600                                                                          <---------MYB52(1)                                <---------MYB52(1)           <---------ZAT2                               <----------DOF2               --------->At4g35610         <---------ANAC46 <---------GLK1(2)                  <---------At4g35610     <------NtERF2      --------->LBD16             --------->ATHB12   ------>ZmHOX2a(2)    ------>NtERF2   --------->ARR14(2)             <---------YAB1      <-----------------AGL2   <---------DEAR3(1)<------ZmHOX2a(2)           <----------DOF2 <---------ANAC46      ----------->HVH21 --------->WRI1     <---------ARR14(2)---------->DOF2>>>>>>>>>ARR2 ----------->HVH21  <-----------HVH21   tatcgctggcgatgtgttttccgatcccgattcctttagccaaagaatagcctttgattgtgaagctgtgtgatccgtttatggtctgtgtcaccgagag  939700              <------NtERF2             ------>NtERF2            <---------DEAR3(1)            --------->ALFIN1           <-------GAMYB           --------->ATERF1(1)                <---------ZAT18          <---------DEAR3(2)                 <---------ANAC58          <---------MYB46(3)                 <---------ANAC58         <---------At1g77200            <-----------RAV1(1)         <---------DREB2C(2)            <---------MYB46(3)         <---------DEAR3(1)           <-------GAMYB        <------NtERF2         <---------HSFC1(2)       <-----------HVH21      <---------HSFB2a(1)      <---------DEAR3(1)      --------->HSFC1(2)    <----------DOF2                 <-----------GT1     <------NtERF2            --------->HSFB2a(1) <----------DOF2      <----------DOF2  ------>ZmHOX2a(1)   agaagtcgtcgtcggtggcgatggcatttcgaaatttcgtcgttgttgctcgctcttttgcaatggattttgtctttgtaagtttttttcctctgtgaaa  939800                                                       --------->ZAT6                            ----                     ---------->DOF2               <---------WOX13(1)         <----------DOF2  ------               --------->ANAC46 ----------->GT1  --------->ATHB12  --------->ANAC58            <-----               *TSS --------->AtMYB61           --------->ICU4     --------->ANAC46 <---------AHL20(2)     --------->GLK1(1)    --------->MYB52(1)    <---------YAB1     --------->ANAC58 --------->AHL20(2)   atgacagatttcattacacagaccaaagcgacggtagtaaatctatagttatgattaacacaaaaaaactcgccatttttctttaaaaaattcttactga  939900                                               <---------O2                                               --------->bZIP60(1)                                   --------->AHL20(2)                                   <---------AHL20(2)       <---------YAB1    --------->AHL20(2)    --------->O2      --------->AHL20(2) ----------->TBP       <---------bZIP60(1)      <---------AHL20(2) <---------AHL20(2)  ------->GAMYB     --------->AHL20(2)--------->CCA1(2)  --------->MYB52(1) ------->GT1         <------ZmHOX2a(1) --------->ANAC46                   --------->AHL20(2) --->ZAT14         <---------TOE1(3)   --------->ANAC58            <---------ANAC46                 - ----ZAT14         <---------TOE2(3)   --------->ANAC58    *TSS  ------>NtERF2      <---------At4g35610   agtgaaattaaaatagaatttaaggatataaatagaattaaacgcaacgacgtcgtttgtatatcgctggctgagaaaaaatatgcagcgactgcgagag  940000                                                     --------->DEAR3(1)                                                   <------NtERF2                                                   ------>NtERF2                                                   <---------At4g35610                                                  <---------ATERF1(2)                                                  --------->ATERF1(2)                                                  <---------DEAR3(1)                                                  --------->DEAR3(1)                                                  --------->RAP2.6(2)                                                  --------->RAP2.3(2)                                                 --------->ATERF1(1)                                                <---------ATERF1(1)                                               --------->LBD16                                               ------>NtERF2                                               <---------SPL7                                         <---------ICU4                                        <---------YAB1       --------->DEAR3(1)          >>>>>>>>>>AtTINY2<------NtERF2    <---------ALFIN1               <---------ETT(1)<---------ATERF1(1)    --------->AtMYB61         <---------HSFC1(2)--------->ATERF1(1)    --------->DEAR3(1)        --------->HSFC1(2)------>NtERF2   <---------MYB55(2)         <---------HSFB2a(1)--------->RAP2.3(1)   --------->MYB46(3)         --------->At4g35610--------->DEAR3(2) --------->AtMYB61            --------->HSFB2a(1)--------->SPL7             --------->GLK1(2) --------->ANAC46        <---------HSFB2a(2)  <---------RAP2.6(2)           --------->ARR14(2) <---------ALFIN1        --------->HSFB2a(2) <---------LBD16<---------GLK1(1)    <---------GLK1(2) -------->MYB46(3)   <---------ANAC46   --------->ICU4  <------ZmHOX2a(2)   <---------ARR14(2)     --   tcaccaccaccgaagacgcgttgtcttggagaagcttccgacattattccggccgccgatcgatttctccgatgtgcgaatttgattctcccatggctaa  940100                                                                                              -------                                                                                           <---------ARR14(2)                                                                                           --------->ARR14(2)                                                                                         --------->ANAC58                                                                                      <---------ZAT14                <-----------RAV1(1)                                                   --------->ZAT14               <---------MYB52(1)                                                  --------->At4g35610              <-------GAMYB                --------->TOE2(3)                      --------->ANAC46          --------->ANAC46           <---------DAG2            --------->MYB46(3) <---------DEAR3(1)   <---------HSFB2a(2)               --------->TOE2(3) <---------ARR11(3)  ------>ZmHOX2a(2)<------ZmHOX2a(2)   --------->HSFB2a(2)      --------->TOE1(2)     <---------HSFB2a(2)<---------At5g28300 --------->ANAC58 ------->TOE1(2)<---------MYB46(3)   --------->TOE1(3)<---------GLK1(1)   <------ZmHOX2a(2)<---------ARR11(3)   accctcgagaactcgccgttgttgctcaaacctgcaaaaccttatccctaatctcgaaatctctaaccattcaccgatctctcgacgctgcacgatcctt  940200                                                                           =========================HOX2a_HOX2a                                                                           ------>ZmHOX2a(2)                                                                           ======================HOX2a_HOX2a                                                                          =======================HOX2a_HOX2a                                                                          <---------GLK1(1)        --                                                                          ==========================HOX2a_HOX2a                                                                          <------ZmHOX2a(2)        --                                                                          --------->GLK1(1)        <-                                                                         <---------ARR14(2)       ---                                                                         --------->ARR14(2)       ---                                                                         <---------GLK1(2)      -----                                              <---------------AtSPL3     <---------ARR11(3)     -----                                              --------------->AtSPL8     --------->AGP1   ------>ZmHOX2a(1)                                              --------------->AtSPL3     --------->ARR11(3)    ------                                             <---------ANAC55(2)        <---------At4g35610  <-------                                             <---------ANAC46           --------->At4g35610  ------>ZmHOX2a(1)                                           --------->CCA1(2)      <----------DOF2    <---------At4g35610                                          --------->ARR11(1)  --------->ANAC46     --------->REM1(1)-                                          <---------ARR14(2)  <---------ALFIN1--------->ANAC46 ------    --------->ARR11(3)                    --------->ARR14(2)<---------ALFIN1  <---------ALFIN1 <-----    <---------ARR11(3)          <---------GLK1(2) --------->SPL7 <---------DAG2  <----------DOF2<---- -->TOE1(2)        <-----------GT1      --------->ANAC46   <---------REM1(2) <---------LBD16<--------   ggaaaacatctcaatcccgtttcacaactccatcgattctcaacgatacgcgtacttcatctacacaccttttcagatccccgcttcatctcctcctccg  940300  Previous    Next  AGI:  At3g03740.1    Description:  ATBPM4 (BTB-POZ AND MATH DOMAIN 4); protein binding. similar to ATBPM5 (BTB-POZ AND MATH DOMAIN 5), protein binding [Arabidopsis thaliana] (TAIR:AT5G21010.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67508.1); contains InterPro domain MATH (InterPro:IPR002083); contains InterPro domain TRAF-like (InterPro:IPR008974); contains InterPro domain BTB/POZ fold; (InterPro:IPR011333); contains InterPro domain Kelch related (InterPro:IPR013089); contains InterPro domain BTB/POZ-like; (InterPro:IPR000210); contains InterPro domain TRAF-type (InterPro:IPR013322); contains InterPro domain BTB/POZ; (InterPro:IPR013069) Range:  from: 936885    to: 939815    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g03750.1    Description:  SET domain-containing protein. Identical to Histone-lysine N-methyltransferase SUVR3 (SUVR3) [Arabidopsis Thaliana] (GB:Q9SRV2;GB:Q1HAZ4;GB:Q7Y033); similar to nucleic acid binding / transcription factor/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G23740.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67507.1); contains InterPro domain Pre-SET zinc-binding region; (InterPro:IPR007728); contains InterPro domain Post-SET zinc-binding region; (InterPro:IPR003616); contains InterPro domain AWS (InterPro:IPR006560); contains InterPro domain SET; (InterPro:IPR001214) Range:  from: 939959    to: 941596    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version