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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<------
---------
--------->
AHL20(1)
--------->
AHL20(2)
--------->
GLK1(2)
------->
GAMYB
<---------
AHL20(2)
---------
GLK1(2)
<---------
ALFIN1
<-----------
GT1
--------->
AHL20(2)
-->
TGA1a
<---------
At4g35610
<---------
ARR11(3)
<---------
AHL20(2)
---
O2
<----------
DOF2
<---------
GLK1(2)
--------->
YAB1
<-
-->
O2
<----------
DOF2
<-----------
GT1
--------->
ARR11(3)
------->
GAMYB
<--------
---
TGA1a
------>
ZmHOX2a(1)
<----------
DOF2
<----------
DOF2
<-----------
GT1
--------->
ICU4
cggaatctaaatcaactcctacttctttctctctttctttttgcaactcccccttaacttttagatttttacaaatttcaaccctataaaaaaattatga
546500
<---------
ARR11(3)
---
YAB1
--------->
ARR11(3)
--------->
TOE2(3)
>
YAB1
<-------
MYC3
--------->
ZAT14
<--------
--------
ALFIN1
------->
MYC3
--------->
ANAC46
---------->
ID1
-
ICU4
------->
TEIL
<-------
TEIL
<----------
DOF2
--------->
ANAC46
<---------
TOE2(3)
cacacccttacccatatgaatcacacttactcataggcacatgatattctctttgtcatactctccactaaatctcaaaattttgagatttgttgttata
546600
--------->
AHL20(2)
<---------
AHL20(2)
--------->
TOE2(3)
--------->
YAB1
------->
GAMYB
--------->
ANAC46
--------->
TOE2(3)
--------->
AHL20(2)
--------->
ANAC58
<-----------
GT1
<---------
YAB1
<---------
AHL20(2)
--------->
ANAC58
-
YAB1
<-----------
GT1
--------->
MYB46(3)
----------->
GT1
<-----------
GT1
--
gacaattcatgtattctattgtttaacttatttcagttcaaccaaaattttcattaattcgaatattaaaaaaaaaaaactagtaacaggccattccaaa
546700
<---------
AHL20(2)
<---------
O2
--------->
TGA1a
<---------
TGA1a
<---------
ANAC55(1)
<---------
bZIP60(2)
--------->
O2
<---------
ANAC58
<---------
ANAC58
<-----------
GT1
=========================
--------->
KAN4(2)
----------->
STF1
<---------------
AtSPL8
=====================================
bZIP_DOF
--------->
YAB1
<---------
YAB1
<----------
DOF2
<---------
TGA2(2)
---
<---------
YAB1
--------->
YAB1
<---------
DAG2
----------->
TGA1
<---------
YAB1
<-------
GAMYB
--------------->
AtSPL3
<---------
ALFIN1
--------->
YAB1
<---------
ANAC46
---
------->
GLK1(2)
--------------->
AtSPL8
<-----------
GT1
<---------
YAB1
----------->
HVH21
---
gagtctgttatcaaaatgtgttttggtactattatgttgaatatttcccacctttcattttcattcataaacttggtgacgtggatttattttgatatac
546800
<-------
TEIL
----------->
GT1
<------------
CBF
--------->
DAG2
--------->
AHL20(1)
---------->
DOF2
<---------
ARR11(3)
============
bZIP_DOF
--------->
ARR11(3)
<----------
ID1
------->
TEIL
------>
ANAC58
<-----------
GT1
<---------------------
WRI1
<---------
At5g28300
------>
ANAC58
--------->
YAB1
<---------
At4g35610
------------>
CBF
<-----------
GT1
------>
ANAC46
----------->
GT1
<---------
AHL20(1)
--------->
AtMYB61
--------->
AHL20(2)
---------
aagtaaaaggttcaatttgtaaatataacaaaatattgggagctatttcgataaaaccaaaacaatgggccaagaattaaaaatttaccatgaacatgag
546900
--------->
YAB1
<---------
ICU4
<---------
TOE2(3)
<---------
ATHB12
---------->
DOF2
<---
--------->
WOX13(1)
<---------
YAB1
<-----------------
AGL1
-------
<---------
ATHB12
<-------
TEIL
<---------
ANAC58
<---------
ARR11(3)
--------->
WOX13(1)
<-------
MYC2
<---------
ANAC58
--------->
ARR11(3)
<------
ZmHOX2a(2)
------->
MYC2
--------->
WRKY38(1)
----------->
GT1
--------->
ARR11(3)
<-------
MYC3
<-----------
RAV1(1)
--------->
DAG2
<---------
ARR11(3)
------->
MYC3
<---------
ZAT6
<---------
ATHB12
<------
ZmHOX2a(2)
>
TOE1(2)
*
TSS
<------
ZmHOX2a(2)
----------->
RAV1(1)
<<<<<<<<<<
WRKY63
---------->
DOF2
--
agagtgaga
gaagaagatcgatcaatcaatcatcaaactctctgtgtgccacatgcattactactgttgacttgttcaataaaggtaaagtaagatcaat
547000
<---------
ANAC58
<---------
ANAC58
--------->
ICU4
<------
NtERF2
--------->
LBD16
<---------
MYB46(3)
<---------
ANAC46
<---------
At4g35610
<---------
LBD16
<------
NtERF2
--------->
ANAC46
------>
NtERF2
--------->
HSFB2a(2)
<---------
ANAC46
<---------
ETT(1)
<---------
DEAR3(1)
<----------
DOF2
<---------
ARR14(2)
<---------
ATERF1(1)
----------------------->
TaNAC69(2)
<---------
RAP2.3(3)
--------->
HSFC1(2)
<---------
ARR11(3)
<---------
RAP2.6(1)
--------->
HSFB2a(1)
<---------
ARR14(2)
<---------
RAP2.3(2)
<---------
HSFB2a(1)
--------->
ARR14(2)
<---------
ATERF1(2)
<---------
HSFC1(2)
--------->
DEAR3(1)
--------->
ATERF1(2)
--------->
ARR14(2)
<------
NtERF2
--------->
ARR14(2)
<---------
ERF1
<---------
ARR11(1)
------>
NtERF2
--------->
ARR11(3)
<---------
RRTF1(1)
------->
TEIL
<---------
ATERF1(2)
------>
ZmHOX2a(2)
--------->
ATERF1(1)
<-----------
ARR10
<---------
ALFIN1
--------->
GLK1(1)
<---------
ORA47(2)
<---------
ARR14(2)
--------->
DEAR3(1)
<---------
RAP2.6(2)
---------
--------->
GLK1(2)
------>
NtERF2
<---------
AGP1
<---------
DREB2C(2)
--------->
ANAC46
<---------
ARR14(1)
--------->
LBD16
<---------
CCA1(2)
<---------
RRTF1(2)
<-------
GAMYB
<---------
CCA1(2)
<---------
HSFB2a(2)
<---------
GLK1(1)
<---------
RAP2.3(1)
--------->
MYB52(2)
------
LBD16
<---------
ANAC58
------>
ZmHOX2a(2)
<---------
RRTF1(3)
<---------
MYB46(3)
-->
WOX13(1)
<---------
ANAC58
<------
ZmHOX2a(2)
<---------
O2
<---------
YAB1
<---------
MYB52(1)
------->
LBD16
<---------
LBD16
<---------
MYB46(3)
--------->
RAP2.6(3)
--------->
At4g35610
<--
ccggcgaatcttctttcgttttccggcaccgatctcggtggatctccgattcac
atggcggcggataatgcttatctgatgcagtttgttgacgaaacct
547100
<---------
ARR14(2)
--------->
ARR14(2)
--------->
GLK1(2)
<---------
ARR11(1)
<-----------
ARR10
------->
TEIL
<---------
ARR14(1)
<------
NtERF2
--------->
LBD16
----
------>
NtERF2
<---
--------->
ARR14(2)
--------->
ATERF1(2)
------
------->
GAMYB
<---------
DEAR3(1)
-------
<-----------
GT1
<---------
ATERF1(2)
<-----------
GT1
--------->
LBD16
<----
>
ARR14(2)
<---------
ARR11(1)
<---------
LBD16
--------->
TOE2(3)
<------
NtERF2
<-------
--------
DOF2
<----------
DOF2
<---------
MYB52(1)
<---------
O2
<-----------
GT1
ctttttacaaccgaatcgttctgagtcatcttttgccggcgaatctatgggaacccttacctcattttctccagacatggctccgaaattacctcgccgg
547200
--------->
ARR11(3)
---------->
DOF2
--------->
HSFB2a(2)
<---------
ZAT14
<---------
HSFB2a(2)
----->
ARR14(2)
<-----------
RAV1(1)
--------->
WRKY12
------
ARR14(2)
----------->
RAV1(2)
--------->
DOF5.7(2)
--->
LBD16
------>
ZmHOX2a(1)
--------->
TOE2(3)
<---------
DAG2
-->
ANAC46
--------->
LBD16
--------->
TOE1(3)
------>
MYB46(1)
<---------
--
NtERF2
<---------
LBD16
--------->
TOE2(3)
------>
MYB83
<----------
DOF2
--
LBD16
<---------
At4g35610
--------->
REM1(1)
<---------
TOE2(3)
<---------
ARR11(3)
<
aaccctactatacttcatctccggtttcctctggtgcttctacatctattaccttaaaatcaacgtttaccttcccaaag
gtctcgactttcacttttgt
547300
--------->
At5g28300
----------->
GT1
<---------
ZAT14
<---------
TOE2(3)
--------->
ZAT14
---------->
DOF2
--------->
ZAT14
<----------
DOF2
<---------
AHL20(2)
<---------
ZAT14
<---------
ANAC58
--------->
AHL20(2)
--------->
ZAT14
<---------
YAB1
<---------------
AGL15
<---------
ZAT14
-
DOF2
<---------
ANAC58
--------------->
AGL15
--------->
ZAT18
-----------
GT1
<----------
DOF2
<-----------
GT1
<---------
ANAC46
<---------
ANAC46
attcactattgcttaatcgctttctatgttatcgatttttcaatttaaaggaagagggtttcttcgtgtactgtacagtaatttggatttgatgtggata
547400
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AGI:
At3g02580.1
Description:
STE1 (STEROL 1); C-5 sterol desaturase. Identical to Delta (STE1) [Arabidopsis Thaliana] (GB:Q39208;GB:Q8L9C0;GB:Q9SWU4;GB:Q9SYS2); similar to delta 7-sterol-C5-desaturase, putative [Arabidopsis thaliana] (TAIR:AT3G02590.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96921.1); contains InterPro domain Sterol desaturase; (InterPro:IPR006088)
Range:
from: 546910
to: 548802
Orientation: Forward
Links:
TAIR
MIPS
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publications
when using AthaMap.
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