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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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--------->ANAC46
<----------ID1
--------->ANAC58
--------->ANAC58                                                                                 ---
----->YAB1                                                                                       <--
----YAB1                                               ------>MYB83                          <------
----WOX13(1)                                           ------>MYB46(1)                      --------
->ATHB12                                 <---------ARR11(3)                          --------->ARR11(3)
-YAB1                                    --------->ARR11(3)                          <---------ARR11(3)
>ICU4          <----------DOF2     <-----------GT1   <---------MYB59           <-----------GT1 -----
 
aataagccaaactatgtgttttttggttccttcaaattttacaagaacttataaaaccaaactaaaacaggtctctcaaattttacaagaacttataaaa  524200
                                                                                                  <-
                                                        <---------LBD16                           <-
                                                   --------->ARR11(3)                            <--
                               --------->ANAC58    <---------ARR11(3)      <---------ICU4        ---
       ---------->DOF2  --------->YAB1           <---------YAB1         --------->bZIP60(1)     ----
------>YAB1            <---------ATHB12        <---------ICU4           <---------bZIP60(1)    <----
-------ICU4           ------>MYB46(1)         <---------YAB1       <---------ANAC58    <---------ANAC58
---AHL20(2)           ------>MYB83          <---------ICU4         <---------ANAC46    <---------ANAC58
->AHL20(2)  ---------->DOF2    --------->ANAC58--------->YAB1      <---------ANAC58    <---------ANAC46
---->ARR11(3)        --------->WOX13(1)    --------->ICU4<---------ANAC46  --------->YAB1    <------
 
tcatgtccccaaatgcaaagagaccaatcaaaacaagacaaatctcattatcatgatatttcggatagtaccgtgccatcatcgcaaatggcgagggagt  524300
                                                      --------->ANAC58
            --------->MYB52(1)                        --------->ANAC58
   --------->MYB52(1)                             --------->ANAC58
   -------->P                                     --------->ANAC58
--------ANAC46                                    --------->ANAC46
--------RAP2.6(2)                               ------->GAMYB              <------MYB46(1)
-------At5g28300                               --------->ANAC46            <---------DEAR3(2)
------>RAP2.6(3)     --------->MYB52(1)        --------->MYB46(3)          <------MYB83
----->MYB52(1)      --------->ZAT18       <----------DOF2                 <---------TOE1(2)
-----ARR14(2)<---------------------WRI1 --------->At4g35610              <---------MYB52(1)
---------AtSPL3------->GAMYB           <---------ARR11(3)       <----------DOF2        ------>ZmHOX2a(1)
 
tacggctaccagagacaacggagcgaacagagtaaggctcgagagcttcaacgacgcaagcccattccttttcttcgttggtaccaattcctagttgccc  524400
             --------->LBD16
             --------->HSFB2a(2)
             <---------HSFB2a(2)
            <---------LBD16                                                         --------->CCA1(2)
           ----------->RAV1(2)          ----------->GT1----------->GT1    --------->YAB1
     --------->LBD16      ---------->DOF2    <-----------GT1             <---------YAB1      -------
 
atcttctccagagcccctggaaaacagacaaaagatggtaagagagtttaacaagagtaagtgaaaaatcgaaactttgataagtagatagaagagaggt  524500
                    <---------WOX13(1)
                  --------->ATHB12
                 <---------YAB1
                 --------->ICU4                                                        <---------ZAT14
   --------->ARR14(2)              --------->MYB46(3)                           ----------->GT1 ----
   <---------ARR14(2)       --------->At4g35610             <------ZmHOX2a(1)  --------->DAG2  <----
---->GT1  <-----------RAV1(2)      --------->ICU4 ---------->DOF2    <------ZmHOX2a(1) --------->ZAT18
 
gaagagtattcgaccaggctatgattgaagtagctgtaaccattagacacagagaaagagagaggagagagaggagagagagaaggtgaatgcacagaga  524600
                                                                                            --------
                                                                                            <-------
                                                                                        <---------YAB1
                                                                                       <---------AHL20(1)
                                              <------ZmHOX2a(1)                        --------->AHL20(1)
                                         -------->HAHB4                               --------->AHL20(2)
                      <---------ARR14(2)--------->ICU4                                --------->YAB1
        --------->ANAC58             *TSS--------->YAB1                           <---------AHL20(2)
        --------->ANAC58           <------MYB46(1)                                --------->AHL20(2)
      ---------->DOF2 --------->ARR14(2)<---------YAB1                <---------ANAC46<---------AHL20(2)
----->CCA1(2)     --------->ALFIN1 <------MYB83                       <---------ANAC55(1)  ---------
------ID1  ---------->DOF2         ----------->GT1     <---------ANAC46    ------->TEIL<---------AHL20(2)
 
gacaagcgcaaaagcaaagcagtgggattcgagggggatggtaataataggaatagcgatgtgtttatatgttaagtgtatgtgtttaattatatttaat  524700
                                    --------->KAN4(2)
                                   <----------TaMYB80
                                  --------->ARR14(2)
                                  <---------ARR14(2)
                                  ---------->TaMYB80
                                 <---------CCA1(2)
                                --------->LBD16
                               <---------ANAC58
                               <---------ANAC46                         --------->YAB1
        ------>ZmHOX2a(1)     <---------LBD16                    <---------ICU4
       <---------MYB59     --------->GLK1(1)                   <---------AHL20(1)
 <---------YAB1          --------->ATHB12                      --------->AHL20(1)
 <---------AHL20(2)   <------------CBF            --------->YAB1--------->AHL20(2)
->AHL20(2)     ------------>CBF<---------ANAC58--------->HSFB2a(2)     <---------ZAT6
--AHL20(2)  <-----------GT1<---------GLK1(1)   <---------HSFB2a(2)  <-----------GT1                <
>AHL20(2)<---------ICU4 <XXXXXXXXXXXXXXXXXXXXMIR2112-5P        <---------ARR11(3)            <------
 
tcatattattcctaattactcaatacattgatttccgtatattcgtatttctataaacatgctcaaaatatttactgataatgtgtgtttggagttattt  524800
                     <---------YAB1
                --------------->AGL15
               <---------YAB1                                                                   ----
          --------->At4g35610                                                               <------ZmHOX2a(1)
       --------->At4g35610                                             --------->AHL20(2)   --------
---------TOE2(3)<---------------AGL15                <-------MYC3      <---------AHL20(2)  ---------
---YAB1<---------At4g35610--------->AHL20(2)         ------->MYC3   --------->AHL20(2)  ---------->DOF2
 
ttaagtttacagcagattactattttgaataaaaaaacttcttatacaaatgtacacatggaaaacatgaataaaaaaatggaacaatagaaaaaggata  524900
                                            <---------AHL20(2)
                                           <---------AHL20(2)
                                  ---------->DOF2
    ---------->DOF2             <------ZmHOX2a(1)
  <<<<<<<<<WRKY18              <----------ID1                                                -------
<-----------HVH21             <---------TOE2(3)                                              <------
----->GLK1(2)        <------ZmHOX2a(1)----------->GT1      ---------->DOF2               ---------->DOF2
->YAB1              ----------->GT1 ----------->GT1 <---------REM1(1)              --------->ETT(2)
-->GT1     >>>>>>>>>TBF1--------->AHL20(2) --------->AHL20(2)                      <---------ETT(2)
 
atctgtcaaaagaagaagaagagaggaataaataaggaaaagagaaataaatgaaatgtagggaaagagacttatgtgttgaattgtctacaaaaagatt  525000
                                                                                       =============
                                                                                     ===============
                                                                             -------->HAHB4
                                                                             --------->YAB1
                                                                             <---------ICU4       <-
                                                                            <---------ATHB12      --
                                                                            --------->ICU4       <--
                                                                          ------>MYB46(1) <---------AHL20(2)
                                                                     <-----------GT1 ---------------
                                                        --------->TOE2(3) ------>MYB83 <------------
                                  <---------AHL20(2)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2) <------
                                 xxxxxxxxxxxxxxxx>smallRNA(i) <----------DOF2--------->ATHB12<------
      ---------->DOF2           <---------RVE1(1)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)---------
-->ARR11(3)     <----------DOF2<---------GLK1(2)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) --------->AHL20(2)
---ARR11(3)<----------DOF2     --------->ARR11(3)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)--------------
 
ttaagagtttaaagcttttcttttccctgtatcagattttttttttttttttggctcaacatcaactttcatttaccaaatgattacatccaattaaagg  525100
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AGI:  At3g02510.1   
Description:  regulator of chromosome condensation (RCC1) family protein. similar to regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana] (TAIR:AT5G16040.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96878.1); contains InterPro domain Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); contains InterPro domain Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091)
Range:  from: 521801    to: 524638    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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