Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                         --------->AHL20(2)             --------->YAB1            --------->ATHB51                   <---------AHL20(2)      ----------->GT1                  <---------AHL20(2)                --------->AHL20(2) --------->AHL20(2)    <----------DOF2 --------->ATHB12                  <---------AHL20(2) ----->AHL20(2)     <-----------GT1   <---------AHL20(2)                <---------WOX13(1) ---->AHL20(2) <---------YAB1         <---------AHL20(1)  <---------At4g35610         --------->YAB1 -HVH21  <---------AHL20(2)           --------->AHL20(2)  --------->At4g35610  --------->At4g35610   aaaaaaaatagttaattgtgatttactttccaacttacaaattatttgacaactgtagttagctgaaattgttgatttatttgctgaattatcaggctaa  377800                                                                                                    -                                                                                           ----------                  <-----------GT1                                                      <---------ANAC58              <---------ZAT6                              ----------->RAV1(1)        --------->ARR11(3)        --------->ANAC58                  <---------At4g35610           <---------YAB1 <---------ANAC58        --------->ANAC58           <--------P            --------->MYB46(3)          <---------ARR11(3)   aaatagagggaagctagtattaactgaataaactctggttagtcatctacttatcttcaacaacacatttcattacaattgaattaagttcttgtcttaa  377900                                                                                                  ---                                                                                                 ----                                                                                         <---------STY1(2)                                                                                     --------->STY1(2)                  <------------CBF                                          --------->YAB1  ---------                <---------AHL20(2)                                          --------->TOE2(3)    <---          <---------DAG2                                               ------------>CBF  --------->At4g35610 ---------->GT1------------>CBF  <---------MYB52(1)                   --------->ANAC58   --------->STY1(2) >ID1     <----------DOF2<---------MYB52(2)                           --------->ANAC58   <---------At4g35610   tctcgttactaactttattcaattgcaactaatcccttagtttagttcataaatcgttcccgcttagataactagcaatcttagcttagctagctaacaa  378000         XXXXXXXXXXXXXXXXXXXX>MIR837-3P                             ----------->TBP --------->MYB46(3)                                                 <---------AHL20(2) ---->GAMYB                              <---------YAB1    <-----------GT1                          < ----->MYB46(3)                       <---------YAB1   <---------AHL20(2)           --------->YAB1<-- >MYB52(1)                         <---------YAB1<---------AHL20(2) --------->AHL20(2)            --- ------MYB52(2)                   <------------CBF     <---------YAB1   --------->AHL20(2) --------->GLK1(2)   cgaacaaacaaacaaacaaaaaacttcattcagacttattgttattcttgtttattttttattacatcatataaataaacaaaccctcataagtttctgt  378100                              <---------CCA1(2)                     --------->ALFIN1                   <---------TGA1a          ------------>CBF <-------TEIL                                                 ------------- --------->ARR11(3)--------->ZAT2                                           <---------ZAT14 <---------ARR11(3)--------->TGA1a                          --------->YAB1  --------->ZAT18 ---------CCA1(2)  <---------ZAT2                      ------------>CBF   --------->ZAT14 -------AHL20(2)  <---------TOE1(2)             <---------ICU4            <---------ZAT18  ---------- ------>AHL20(2) <-----------RAV1(2)           <------ZmHOX2a(2) --------->AtMYB61<---------MYB52(1)   ttaaatcttcttcacaatctcaggtgtgattcatctcttcaaattttcgatcatttctacaatcagaccaaaacagagcgctctgttttttttgttcttc  378200                                                                              ------>ZmHOX2a(2)                                                                              --------->YAB1    --------->ANAC58                                                         <------ZmHOX2a(2)    --------->ANAC58                            --------->ARR14(2)          --------->ARR14(2)    <<<<<<<<<<<<<<<<<LFY                        <---------ARR14(2)   <---------ICU4    --------->ANAC46                           =====================================HOX2a_HOX2a -->AtSPL8                          --------->TOE2(3)               --------->At4g35610          <--- >ID1------------>CBF        ---------->DOF2   <------ZmHOX2a(1)<---------ARR11(3)       ----------->ARR10   ttaatcacacaatggaaacaaaaactgaaaacaaagaacatcaatggaaggattcagtttcttcaaggtcatcttcacgatcgtcatcgataacatctgc  378300                                               --------->YAB1                                 ------>ZmHOX2a(1)     <---------At4g35610                         <---------ALFIN1      <---------ICU4                      --------->ANAC46         -------->ATHB1                      ----------->HVH21        --------->ATHB12                      <---------ETT(1)        <---------YAB1                   --------->ARR14(2)         <---------ATHB12                       --------->bZIP60(1)                   <---------ARR14(2)    --------->ANAC58                            <---------bZIP60(1)                  <---------GLK1(1)      --------->ANAC58 <---------At4g35610        --------->TGA1a <---------LBD16  --------->GLK1(1)      --------->ANAC46 ----------->RAV1(2)    <-----------HVH21 -------DOF2 <----------DOF2<----------DOF2   --------->ICU4          <---------GLK1(2)         <----   ttcttcggatggacactttgatatccgacactttcctcttcccaagccatcattgtctgcttctgaggcacagaaactgagagagtcacatcaggcttat  378400                                                                                       --------->GLK1(1)                                                                                       <---------GLK1(1)                                                                                 -------->P                                                                       --------->ARR14(2)                                                                   <---------LBD16 --------->YAB1                                                                 -------->P  ========================          --------->At4g35610                                   <-----------GT1  ------>MYB46(1)       <---------MYB52(1)  ------>ZmHOX2a(1)                  <---------WOX13(1) ------>MYB83      <-----------HVH21<---------ARR14(2)         <---------HSFC1(2)   <---------ARR14(2)       -----   <---------At4g35610 --------->ARR14(2)         --------->HSFC1(2) --------->LBD16  <---------GLK1(2) -----YAB1<---------At4g35610       ------>ZmHOX2a(1)       --------->ATHB12 <------ZmHOX2a(2) ------   aattcatctgttagctcatataccagttcctcttggtcctcaaatcaccagaaccatcttattgatttacccggttacgatccaaccagaattccatcct  378500                           --------->ANAC46                          <---------LBD16 ==HOX2a_HOX2a   ----------->GT1 ->ZmHOX2a(1)   --------->LBD16                  <---------ATHB12                 <-----------GT1 --->TOE2(3)  <---------LBD16      <---------ANAC46 ------->TEIL      --------->ANAC46        -------   cagttttctctagtaaaccgggtaattcgacggaatggagtctagcttctaatgaatctttgtttagcatccacgatgggaattttagcatttcaacagc  378600                                        ------->MYC3                                        <-------MYC3                                       <---------O2                                       --------->TGA1a                                       =================MYC_MYB                                       <---------TGA1a                                       --------->O2                           --------->LBD16                                       --------->ANAC55(2)                  <---------LBD16                                       --------->ANAC46                   <---------ALFIN1                                    <-------TEIL                          --------->DEAR3(1)                                   <-----------HVH21                      --------->AtMYB61                              --------->MYB52(1)                       <---------ALFIN1         -----                             <---------ARR14(2)                   ------>ZmHOX2a(1)          <------- <---------TOE2(3)    --------->CCA1(2)<---------ANAC55(2)    <---------ARR14(2)           ------>MYB83 >GAMYB    ----------->ARR10 --------->ARR14(2) ------->GAMYB --------->ARR14(2)           ------>MYB46(1)   gttgagattggctgagataccgagatttgaagaaacggttcacgtgataaccgaaatcaactcggttcctcttccacctccggttaagaaaccaaatgaa  378700  Previous    Next  AGI:  At3g02120.1    Description:  hydroxyproline-rich glycoprotein family protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO49172.1) Range:  from: 377104    to: 377720    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g02125.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G39200.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN77667.1) Range:  from: 378212    to: 379619    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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