Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                  ----------->HVH21        <----------DOF2       --------->YAB1                --------->TGA1a -------At4g35610                    <---------O2        --------->At4g35610            <---------ATHB12 ------>At4g35610                    <---------TGA1a     --------->ZAT2        ---------->DOF2  ----- --ANAC58  --------->ANAC58          ===============bZIP_DOF                 --------->YAB1   <------ --ANAC58  --------->ANAC58          --------->O2   <-----------GT1         <---------YAB1    -------   agatgagaagcataagccttgacgaagtcatgaggcgagacgtctttcacagttttaccagttgccatggctcaagttatcaaaagactaatcactgatc  365200                           ------->TEIL                      ----------->RAV1(2)                      <---------ZAT2                      --------->At4g35610                      <---------At4g35610                     ------->TEIL                   ------->GAMYB                  --------->ANAC58           <-----------GT1<---------GLK1(2)   --------->HSFB2a(2)--------->ZAT2           <---------TOE2(3)                                <---- ----------->RAV1(2)<-----------RAV1(2)---------->DOF2           --------->YAB1            <---------RVE1(1) ->ZmHOX2a(2)     --------->ANAC58   --------->LBD16            <---------ATHB12          <---------ARR11(3) ---ARR11(3)      --------->ANAC46  --------->ANAC46  <-----------GT1                   --------->ANAC58 -->ARR11(3)    --------->MYB52(1) <---------LBD16   <---------YAB1               *TSS  --------->ANAC58   ttcgtctgggattttgcccaacgcagctgaatctctctccgcaaagactagggtttttattctccaataacaaaacttatatatacggccacgatatttc  365300                       <-----------HVH21                 --------->ARR14(2)                 <---------ARR14(2)               ----------->RAV1(1)                <---------CCA1(2)                 <---------ALFIN1         <-----------GT1                       --------->At4g35610  <---------TOE1(3)  --------->LBD16------>MYB83 <---------ZAT18  <---------TOE2(3)<---------LBD16  -------->P <---------At4g35610         --------->SPL7         <-- -----YAB1   --------->LBD16        ------>MYB46(1)            <---------MYB59             -------->P   gattagggttttctccccatatccgggtcaaaaaatccaacccgttctcagcccacactaatgggcctaattcttcatacggccttactatctaaccagt  365400                                                    --------->WRKY12                                                    --------->WRKY38(1)          <---------MYB52(1)                                                  <---------At4g35610        ------>NtERF2         <-                                                  --------->At4g35610       <---------ALFIN1      ---                                            <---------AHL20(2)           --------->ANAC46       -----          <----------DOF2                  --------->YAB1                --------->ANAC58       -----   --------->YAB1         ------->TEIL    <---------YAB1             ------>ZmHOX2a(1)  --------->ICU4 -------YAB1         ---------->DOF2   --------->ICU4      <---------ZAT6--------->ANAC58 -----------   atgaataatgttctttgatacgataatgcgcctactacggccttattatatcagttgactagtattatgtcctaaacgacaccgttcttaattagtaaca  365500     <---------ANAC46     <---------bZIP60(2)     <---------bZIP60(1)     >>>>>>>>>>HY5     --------->TGA2(1)                                                   <----------DOF2     <---------O2                                                       <---------ANAC58     <---------TGA2(1)                                                  <---------ANAC58     --------->O2                                                      ---------->ID1    ----------->STF1                                           --------------->AGL15   <---------TGA2(2)                                           <---------------AGL15  ----------->TGA1                                            <-----------------AGL1  ----------->HVH21                                           <-----------------AGL3 --------AHL20(2)                                             <-----------------AGL2 ------>AHL20(2)                                              ----------------->AGL2 ---->TOE1(3)  <---------YAB1                                 <-----------------AG ---->TOE2(3)--------->YAB1              <---------ZAT18*TSS ------>NtERF2   <---------AHL20(2) >GT1--------->bZIP60(1)  --------->MYB46(3)  --------->At4g35610--------->ICU4   ttaaatgacgtcgttttataatcgcttaaccactggctattagttcgcatctcaagtcgtctctgccatttttggctttttaatcaaaccctagagagat  365600                                                                                                   <-                                                                                                  <--                                                                                                  ---                                                                                                  <--                                                                                                  ---                                                                                                  <--                                                                                                  ---                                                                                                -----                                                                                            ---------                                                                                     --------->ANAC58                                                                                     --------->ANAC46                                                                             --------->KAN4(2)  -----                                                                ------>ZmHOX2a(2)    --------->ANAC58                                                                =========================HOX2a_HOX2a                                                               ==========================HOX2a_HOX2a-                                                               <------ZmHOX2a(2)  ===================                       --------->ANAC46                       <---------ARR14(2)  ------>ZmHOX2a(1)==                     --------->At4g35610                      --------->ARR14(2)  ===================                   --------->YAB1                     <---------STY1(2) <---------ANAC58 --------->ANAC58                   <---------ICU4                     --------->STY1(2) ----------->GT1---------->DOF2                  --------->ICU4                      --------->ZAT2    <---------ANAC58 --------->ANAC58             --------->ANAC58                         <---------ZAT2    <---------ANAC46 --------->ANAC46             --------->ANAC58           --------->GLK1(2)   --------->DEAR3(1)<-----------GT1 <------   tgagagagcgaagagaagccatcatcagccatggcgatgaagaatctactgtccctagctcgccgatctcagaggcgtttattcctcactcaagccacac  365700                                                                           ------->TEIL                                                                         <------NtERF2                                                                         ------>NtERF2                                                                         --------->LBD16                                                                        --------->RAP2.6(2)                                                                        --------->DEAR3(1)                                                                        --------->RAP2.3(2)                                                                        --------->RRTF1(2)                                                                       <------NtERF2                                                                       --------->ATERF1(1)                                                                       --------->RRTF1(1)                                                                       --------->DEAR4(2)                                                                       --------->RAP2.3(1)                                                                      ------>NtERF2                                                                      --------->ABI4(1)                                                                     --------->RAP2.6(2)                                                                     --------->ATERF1(2)                                                                     <---------ATERF1(2)                                                                     --------->DEAR3(1)                                                                     --------->RAP2.3(2)                                            --------->GLK1(1)        --------->ANAC46                                           ------->TEIL              --------->RAP2.3(3)                                         --------->LBD16             <---------DEAR3(1)                                   <------NtERF2                     --------->RRTF1(2)                                   --------->ATERF1(1)               <---------ALFIN1                                  ------>NtERF2                     --------->ORA47(2)                                  <---------ATERF1(1)               --------->ATERF1(1)                                  --------->LBD16                   --------->RRTF1(1)                                  <---------RAP2.6(3)               --------->RAP2.6(1)                                 <---------ATERF1(2)                --------->RAP2.3(1)                                 --------->ATERF1(2)                --------->ERF1     ------>ZmHOX2a(1)           <---------ANAC46                  ------>NtERF2 -----ZmHOX2a(2)                 <---------RAP2.6(2)               <---------ATERF1(1) -------ARR14(2)                --------->RAP2.6(3)                --------->ABI4(1) ------>ARR14(3)                --------->ATERF1(1)               --------->AtMYB61               <-- -------ARR14(3)                <---------LBD16                   ------->GAMYB                   <-- ------>ARR11(3)                <------NtERF2                     --------->ANAC46                --- -------ARR11(3)               --------->ABI4(2) <---------ATERF1(1)--------->DEAR4(2)            --- ------>ARR14(2)               ------>NtERF2<---------GLK1(1)     --------->DEAR3(1)              <-- ---->ANAC58                   <---------ATERF1(1)  ------>NtERF2 --------->DREB2C(2)          <----- -->RAV1(1)                   <---------DEAR3(1) ------>NtERF2   --------->DEAR3(2)            ------ ---->ANAC58                  --------->ALFIN1  ----------->HVH21--------->MYB46(3)           ------- ----->ZmHOX2a(2)           <---------ANAC58<---------At4g35610 <---------ATERF1(1)           <------ ======HOX2a_HOX2a          <---------ANAC58--------->At4g35610<---------ALFIN1               ------- ===========HOX2a_HOX2a    <---------DEAR3(1)   --------->DEAR3(1)<---------ALFIN1   <---------SPL7 =====HOX2a_HOX2a<---------At4g35610   <---------LBD16 <----------DOF2<---------ATERF1(1)   <-------- ---ALFIN1       --------->At4g35610 <---------SPL7<---------DEAR3(1)--------->RRTF1(3)--------->SPL7   gatcttcctcttcgttttcagctatcgattcggtgccggcttccgcatctccgacggctctatctccaccgccgccgcatcttatgccatacgaccacgc  365800                                                                --------->GLK1(1)                                                                --------->At4g35610                                                               ------->TEIL                                                            --------->ANAC55(1) -------At4g35610                                <---------ARR14(2) ----NtERF2                                      --------->ARR14(2) <---------ALFIN1 ------>ZAT2                       --------->ARR14(2)       --------->ANAC58 ------>At4g35610                  <---------ARR14(2)       --------->ANAC55(2) -------ZAT2                       --------->GLK1(2) ------>ZmHOX2a(1) --MYC3                        <---------HSFB2a(2)  --------->TOE1(3)                   --------->ANAC46 ->MYC3             <------ZmHOX2a(2)  <---------YAB1===============================HOX2a_HOX2a -->O2              ==========================HOX2a_HOX2a   --------->ANAC46 <------ZmHOX2a(2) ---O2             <---------ARR11(3)  ------>ZmHOX2a(1)    <---------ANAC55(2) ------>ZmHOX2a(1) -->ANAC46         --------->ARR11(3)  --------->LBD16      --------->ANAC58--------->ARR14(2)   ---- -ALFIN1<---------YAB1         --------->HSFB2a(2)  --------->TOE2(3)       <---------ARR14(2)-------   ggctgagattataaaaaataagatcaagaagctcgagaatcctgataagaggttccttaaatacgcatctccacatccgatcctcgcttcccacaatcac  365900                  --------->O2                  <---------O2                  --------->TGA1a             --------->ARR14(2)                                                         <---------MYB52(1)           --------->LBD16                                                             <-------GAMYB          <---------ANAC46                                                           <------NtERF2       <---------ARR14(2)                                                           ------>NtERF2      <---------At4g35610                                                          --------->DEAR3(1)      --------->ZAT2                                                               <---------ALFIN1      --------->At4g35610    <---------ANAC58                                    <---------ATERF1(1)      <---------ZAT2   --------->ZAT6                                           --------->ANAC46  <-----------HVH21  <-----------HVH21                                          --------->ANAC58 ----->ARR11(3)   <---------TGA1a     <---------ATHB12                          --------->ANAC58   -- -->YAB1 <---------LBD16     <---------ANAC58                  <---------CCA1(2)--------->RAP2.6(2)<-   atcttgtcagctccggagactcgtgtcactaccttgcccaatggtctacgagtcgctactgagtcaaatctctcggctaagaccgccaccgttggagtct  366000                                         --------->SPL7                                         --------->RAP2.6(3)                                        --------->ARR14(2)                                        <---------ARR14(2)                                        --------->MYB52(1)                                      ------->GAMYB                                      --------->SPL7            ------>ZmHOX2a(2)        --------->ANAC58                                    <---------ZAT14           <---------GLK1(1)         --------->ANAC46                                    --------->ZAT14          <---------ARR11(3)         --------->ANAC58                                  <---------SPL7          --------->ARR14(2)        ------>MYB83                                 <---------ARR14(2)          --------->ARR11(3)        ------>MYB46(1)                              --------->ARR14(2)          <---------ARR14(2)       --------->MYB52(1)                         --------->ANAC58          <---------AGP1          --------->AtMYB61                    ---------->DOF2<---------ANAC58         <---------CCA1(2)--------->At4g35610                    <---------ARR11(3)   <---------ANAC46 ------>ZmHOX2a(2)        <---------At4g35610                    --------->ARR11(3)   <---------ANAC58 ------->ARR14(2)        <---------TOE1(1)                      --------->YAB1--------->ANAC58 --------ARR14(2)       <---------------------WRI1             <---------YAB1<---------LBD16        <   ggatcgacgctggatctcggtttgagtccgatgagaccaacggaacggctcattttttggagcatatgatattcaaaggcacggataggcgtacagtgag  366100  Previous    Next  AGI:  At3g02080.1    Description:  40S ribosomal protein S19 (RPS19A). Identical to 40S ribosomal protein S19-1 (RPS19A) [Arabidopsis Thaliana] (GB:Q9SGA6); similar to 40S ribosomal protein S19 (RPS19B) [Arabidopsis thaliana] (TAIR:AT5G15520.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN83920.1); contains InterPro domain Ribosomal protein S19e; (InterPro:IPR001266) Range:  from: 363888    to: 365282    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g02090.1    Description:  MPPBETA; metalloendopeptidase. Identical to Probable mitochondrial-processing peptidase subunit beta, mitochondrial precursor [Arabidopsis Thaliana] (GB:Q42290;GB:Q9SGA7); similar to mitochondrial processing peptidase alpha subunit, putative [Arabidopsis thaliana] (TAIR:AT1G51980.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15063.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN71501.1); similar to mitochondrial processing peptidase beta subunit [Cucumis melo] (GB:AAK07827.1); contains InterPro domain Peptidase M16, N-terminal; (InterPro:IPR011765); contains InterPro domain Peptidase M16, C-terminal; (InterPro:IP Range:  from: 365556    to: 368918    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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