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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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1        10        20        30        40        50        60        70        80        90        100 
           <---------ATHB12
--------->YAB1       --------->YAB1                                    --------->ICU4
--------->TOE2(3)  ------->TEIL                                      --------->YAB1
------GT1 --------->ANAC58<---------At4g35610                       <---------ATHB12
--->YAB1  --------->ANAC58--------->At4g35610               <---------YAB1     ----------->RAV1(1)
--TaNAC69(2)      <---------CCA1(2)                   --------->ZAT6--------->AHL20(2)
 
caatattaatcccaagcatttgaatcttaagctgtctattaacaaatactaagagtaacacttgtgattcaataaatattagcaacatatacaaaatttc  364900
                                                             --------->ARR11(3)
                                                             <---------ARR11(3)
                                                            --------->CCA1(1)
                                                            --------->RVE1(1)
                                                       ------->GAMYB             --------->ATHB12
                                                    --------->MYB52(1)           <---------ICU4
                                                    ----------->RAV1(1)          -------->ATHB1
                                                   --------->YAB1               <---------YAB1
                                                  <---------ATHB12              --------->ICU4------
                <-----------GT1                  --------->ANAC58               <---------ATHB12
        ------->GAMYB   ---------->DOF2          --------->ANAC58             --------->GLK1(1)
       --------->MYB46(3)                       --------->WOX13(1)            <---------GLK1(1)
      <---------At4g35610     <---------YAB1   --------->MYB46(3)       --------->MYB52(1)    <-----
 
aatacattcaacagacattacacaattcaaagtattatagagaaatgccaacaatcaacagaaatatctatgaactaatggaaatcattgcaatttgagc  365000
                                                                                                 ---
                                                                                            <-------
                                                                                            <-------
                                                                                          ------>ZmHOX2a(2)
                                                                              -------->P <------ZmHOX2a(2)
      <----------DOF2      ---------->DOF2              ---------->DOF2    <---------MYB52(2)    <--
--->At4g35610    <-------TEIL         --------->HSFB2a(1)          <----------DOF2      --------->ARR14(2)
----At4g35610<---------------AtSPL8   <---------HSFB2a(1)          <---------DAG2       <---------ARR14(2)
 
ttaatccatctttattcgagtacatacaaataaagcttggaacatttctactcaaacaaaaaagaagagactttatccactaaccttgccagatcgcttg  365100
               ----------->HVH21        <----------DOF2
      --------->YAB1                <---------O2
------>At4g35610                    ===============bZIP_DOF                            <---------ATHB12
--ANAC58  --------->ANAC58          <---------TGA1a     --------->ZAT2        ---------->DOF2  -----
--ANAC58  --------->ANAC58          --------->TGA1a     --------->At4g35610 --------->YAB1   -------
-------At4g35610                    --------->O2   <-----------GT1         <---------YAB1    <------
 
agatgagaagcataagccttgacgaagtcatgaggcgagacgtctttcacagttttaccagttgccatggctcaagttatcaaaagactaatcactgatc  365200
                          ------->TEIL
                     ----------->RAV1(2)
                     <---------ZAT2
                     <---------At4g35610
                     --------->At4g35610
                    ------->TEIL
                  ------->GAMYB
                 --------->ANAC58
          <-----------GT1<---------GLK1(2)
  --------->HSFB2a(2)--------->ZAT2           <---------TOE2(3)                                <----
----------->RAV1(2)<-----------RAV1(2)---------->DOF2           --------->YAB1            <---------RVE1(1)
->ZmHOX2a(2)     --------->ANAC58   --------->LBD16            <---------ATHB12          <---------ARR11(3)
-->ARR11(3)      --------->ANAC46  --------->ANAC46  <-----------GT1                   --------->ANAC58
---ARR11(3)    --------->MYB52(1) <---------LBD16   <---------YAB1               *TSS  --------->ANAC58
 
ttcgtctgggattttgcccaacgcagctgaatctctctccgcaaagactagggtttttattctccaataacaaaacttatatatacggccacgatatttc  365300
                      <-----------HVH21
                --------->ARR14(2)
                <---------ARR14(2)               <---------ALFIN1
               <---------CCA1(2)                 ----------->RAV1(1)
        <-----------GT1                       <---------At4g35610
 <---------TOE1(3)  --------->LBD16------>MYB46(1)            <---------MYB59
 <---------TOE2(3)<---------LBD16  -------->P --------->At4g35610                                <--
-----YAB1   --------->LBD16        ------>MYB83 <---------ZAT18           --------->SPL7  -------->P
 
gattagggttttctccccatatccgggtcaaaaaatccaacccgttctcagcccacactaatgggcctaattcttcatacggccttactatctaaccagt  365400
                                                   --------->WRKY12
                                                   --------->WRKY38(1)          <---------MYB52(1)
                                                 <---------At4g35610        ------>NtERF2         <-
                                                 --------->At4g35610       <---------ALFIN1      ---
                                           <---------AHL20(2)           --------->ANAC58       -----
         <----------DOF2                  --------->YAB1                --------->ANAC46       -----
  --------->YAB1         ------->TEIL    <---------YAB1             ------>ZmHOX2a(1)  --------->ICU4
-------YAB1         ---------->DOF2   --------->ICU4      <---------ZAT6--------->ANAC58 -----------
 
atgaataatgttctttgatacgataatgcgcctactacggccttattatatcagttgactagtattatgtcctaaacgacaccgttcttaattagtaaca  365500
    --------->bZIP60(1)
    <---------ANAC46
    >>>>>>>>>>HY5
    <---------bZIP60(2)
    --------->O2                                                        <----------DOF2
    <---------O2                                                       <---------ANAC58
    <---------bZIP60(1)                                                <---------ANAC58
    <---------TGA2(1)                                                 ---------->ID1
   ----------->STF1                                           <---------------AGL15
  <---------TGA2(2)                                           --------------->AGL15
 ----------->HVH21                                           ----------------->AGL2
 ----------->TGA1                                            <-----------------AGL2
--------AHL20(2)                                             <-----------------AG
------>AHL20(2)                                              <-----------------AGL3
---->TOE2(3)  <---------YAB1                                 <-----------------AGL1
---->TOE1(3)--------->YAB1              <---------ZAT18*TSS ------>NtERF2   <---------AHL20(2)
>GT1--------->TGA2(1)    --------->MYB46(3)  --------->At4g35610--------->ICU4
 
ttaaatgacgtcgttttataatcgcttaaccactggctattagttcgcatctcaagtcgtctctgccatttttggctttttaatcaaaccctagagagat  365600
                                                                                                  <-
                                                                                                 <--
                                                                                                 ---
                                                                                                 ---
                                                                                                 <--
                                                                                                 ---
                                                                                                 <--
                                                                                               -----
                                                                                           ---------
                                                                                    --------->ANAC46
                                                                                    --------->ANAC58
                                                                            --------->KAN4(2)  -----
                                                               ------>ZmHOX2a(2)    --------->ANAC58
                                                               =========================HOX2a_HOX2a
                                                              <------ZmHOX2a(2)  ===================
                                                              ==========================HOX2a_HOX2a-
                      --------->ANAC46                       <---------ARR14(2)  ===================
                    --------->At4g35610                      --------->ARR14(2)  ------>ZmHOX2a(1)==
                  --------->YAB1                     <---------ZAT2    ----------->GT1---------->DOF2
                  <---------ICU4                     <---------STY1(2) <---------ANAC58 --------->ANAC46
                 --------->ICU4                      --------->ZAT2    <---------ANAC46 --------->ANAC58
            --------->ANAC58                         --------->STY1(2) <---------ANAC58 --------->ANAC58
            --------->ANAC58           --------->GLK1(2)   --------->DEAR3(1)<-----------GT1 <------
 
tgagagagcgaagagaagccatcatcagccatggcgatgaagaatctactgtccctagctcgccgatctcagaggcgtttattcctcactcaagccacac  365700
                                                                          ------->TEIL
                                                                        --------->LBD16
                                                                        ------>NtERF2
                                                                        <------NtERF2
                                                                       --------->RRTF1(2)
                                                                       --------->RAP2.3(2)
                                                                       --------->RAP2.6(2)
                                                                       --------->DEAR3(1)
                                                                      --------->RAP2.3(1)
                                                                      --------->DEAR4(2)
                                                                      <------NtERF2
                                                                      --------->RRTF1(1)
                                                                      --------->ATERF1(1)
                                                                     ------>NtERF2
                                                                     <---------ATERF1(1)
                                                                    --------->DEAR3(1)
                                                                    --------->RAP2.3(3)
                                                                    <---------ATERF1(2)
                                                                    --------->RAP2.3(2)
                                                                    --------->RAP2.6(2)
                                           <---------At4g35610      <---------ALFIN1
                                          ------->TEIL              <---------DEAR3(1)
                                        --------->LBD16             --------->RRTF1(3)
                                  --------->ATERF1(1)               --------->ANAC46
                                  <------NtERF2                     --------->RRTF1(2)
                                 <---------RAP2.6(3)               --------->RRTF1(1)
                                 --------->LBD16                   --------->RAP2.6(1)
                                 <---------ATERF1(1)               --------->ATERF1(1)
                                 ------>NtERF2                     --------->DEAR4(2)
                                <---------RAP2.6(2)                --------->ORA47(2)
                                --------->ATERF1(2)                --------->ERF1
    ------>ZmHOX2a(1)           <---------ATERF1(2)               --------->ABI4(1)
-----ZmHOX2a(2)                 <---------ANAC46                  <---------ATERF1(1)
-------ARR14(3)                <---------LBD16                    ------>NtERF2
------>ARR11(3)                <------NtERF2                     --------->DREB2C(2)             <--
------>ARR14(3)                --------->RAP2.6(3)               --------->DEAR3(1)              <--
-------ARR11(3)                --------->ATERF1(1)               ------->GAMYB                   ---
------>ARR14(2)               --------->ABI4(2) ------>NtERF2    --------->AtMYB61               ---
-------ARR14(2)               <---------ATERF1(1)  ------>NtERF2 <---------ALFIN1                <--
---->ANAC58                   ------>NtERF2<---------GLK1(1)    --------->DEAR3(2)            ------
-->RAV1(1)                   <---------DEAR3(1) <---------ATERF1(1)--------->RAP2.3(1)        <-----
---->ANAC58                  --------->ALFIN1  ----------->HVH21--------->MYB46(3)           -------
======HOX2a_HOX2a          <---------ANAC58--------->GLK1(1)   <---------ATERF1(1)           -------
----->ZmHOX2a(2)           <---------ANAC58--------->At4g35610<---------ALFIN1               <------
=====HOX2a_HOX2a--------->At4g35610   <---------LBD16 <----------DOF2--------->ABI4(1)--------->SPL7
===========HOX2a_HOX2a    <---------DEAR3(1)   --------->DEAR3(1)--------->ANAC46   <---------SPL7
---ALFIN1       <---------At4g35610 <---------SPL7<---------DEAR3(1)--------->ATERF1(2)    <--------
 
gatcttcctcttcgttttcagctatcgattcggtgccggcttccgcatctccgacggctctatctccaccgccgccgcatcttatgccatacgaccacgc  365800
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AGI:  At3g02080.1   
Description:  40S ribosomal protein S19 (RPS19A). Identical to 40S ribosomal protein S19-1 (RPS19A) [Arabidopsis Thaliana] (GB:Q9SGA6); similar to 40S ribosomal protein S19 (RPS19B) [Arabidopsis thaliana] (TAIR:AT5G15520.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN83920.1); contains InterPro domain Ribosomal protein S19e; (InterPro:IPR001266)
Range:  from: 363888    to: 365282    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At3g02090.1   
Description:  MPPBETA; metalloendopeptidase. Identical to Probable mitochondrial-processing peptidase subunit beta, mitochondrial precursor [Arabidopsis Thaliana] (GB:Q42290;GB:Q9SGA7); similar to mitochondrial processing peptidase alpha subunit, putative [Arabidopsis thaliana] (TAIR:AT1G51980.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15063.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN71501.1); similar to mitochondrial processing peptidase beta subunit [Cucumis melo] (GB:AAK07827.1); contains InterPro domain Peptidase M16, N-terminal; (InterPro:IPR011765); contains InterPro domain Peptidase M16, C-terminal; (InterPro:IP
Range:  from: 365556    to: 368918    Orientation: Forward
Links:  TAIR  MIPS 
 
 
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