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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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            ----------->GT1
            <---------ANAC58
            <---------ANAC58
            <---------ANAC46
       --------->AHL20(2)
       <---------AHL20(2)                                                          --------->TOE2(3)
       <--------ATHB1                                                             --------->ANAC58
       --------->ATHB51                                                           --------->ANAC55(2)
       <---------ICU4                                                             --------->ANAC55(1)
      --------->ICU4                                                              <---------ANAC55(2)
      <---------YAB1                                                              --------->ANAC58
    --------->YAB1<---------ARR11(3)                                          --------->YAB1
   <---------AHL20(2)                                                        <---------YAB1
  --------->AHL20(2)<---------ICU4            <----------DOF2         ------->TEIL--------->ANAC46
----->GLK1(2)     --------->ARR11(3)          --------->TOE2(3)   --------------->AtSPL8
-----GLK1(2)<---------ANAC55(2)      --------->GLK1(2)            <---------------AtSPL8
 
atctatataataatttcgtaaaatctttacaaattttaaaattctgtaactttagtttgctatctatgtaatgtacccctattatacgtaaacagcaatg  197600
                                                                                 --------->ALFIN1
                                                                     <--------ATHB1
                                                                    <---------ATHB12
                                                                    --------->ICU4  --------->RAP2.6(2)
                                                                    <---------YAB1--------->At4g35610
                   <------MYB83                             --------->DAG2      <------ZmHOX2a(1)
               <---------REM1(1)                          <---------ATHB12<------ZmHOX2a(1)
              <---------TOE2(3)                      --------->ANAC58--------->YAB1 ----------->GT1
            --------->ICU4                           --------->ANAC46<------------ATHB5
   <---------ANAC55(2)                 ----------->GT1----------------->AGL1 <-----------RAV1(2)<---
   --------->ANAC55(2)                ------->TEIL   <-----------------AGL1 --------->At4g35610 <---
  --------->MYB59  <------MYB46(1) <---------YAB1    --------->ANAC58--------->ATHB12<------NtERF2
 
taagttatgtaagaaataatgtaggttaagaaacagtgatgaatgtaaaaatgtatacccaataaggggcaatgataggagcaggagcggcaaaaactgg  197700
                                                                             --------->ANAC58
                                                                             --------->ANAC58
                                                                          <------NtERF2
                                                                         --------->ANAC58
                                                                         --------->ANAC58
                                                                        <----------ARF1
                                                                     <---------MYB46(3)
                                                                  <------NtERF2
                                                                  <-------GAMYB----------->HVH21
                                                                  --------->ALFIN1
      <---------ARR14(2)                                         --------->MYB55(2)
      --------->ARR14(2)               <------ZmHOX2a(1)         <---------MYB46(3)
   --------->ANAC55(2)            --------->ALFIN1 <------ZmHOX2a(1) --------->MYB55(2)
   <---------ANAC55(2)--------->MYB52(1)     <---------At4g35610--------->ALFIN1
   <---------ANAC46   --------->ARR14(2)     --------->At4g35610<---------ANAC58           <--------
  <---------LBD16     <---------ARR14(2)  <------ZmHOX2a(1)     <---------ANAC58  <---------DEAR3(1)
------ANAC58       --------->ANAC58  --------->ALFIN1           <---------ANAC46--------->MYB52(1)
------ANAC58       --------->ANAC58 <------ZmHOX2a(1)  >>>>>>>>>TBF1--------->ALFIN1 --------->ALFIN1
 
ctcgttacggataagcgttggaacggaacgggaagacgaggaggaggaagatgaggaagaagaagaggcgggtgggaggcaagcgacggtggaagaagta  197800
                                              ---------->DOF2
                                        =================bZIP_DOF
                                        <---------TGA1a
                                        <---------ANAC46
                                      <---------ZAT14                        <-----------RAV1(1)
           --------->HSFB2a(2)        <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     <---------MYB46(3)   <-
           <---------HSFB2a(2)        --------->ZAT14                  <---------DDF1            <--
          <---------LBD16         --------->DAG2        <------NtERF2 --------->ETT(2)           ---
        <---------ARR14(2)       ---------->DOF2       --------->LBD16<---------ETT(2)      --------
        --------->GLK1(2)        =================bZIP_DOF       --------->At4g35610     ---------->DOF2
        --------->ARR14(2)    <------ZmHOX2a(1)      <---------LBD16 --------->SPL7<---------ANAC46<
-------AtSPL8   <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      <------ZmHOX2a(1)  <------NtERF2 ----
 
cgaagagagagtttctggagagaagattgagaaggagaaagtgaagtgagaaagaagccggagagaggagcggtcgacatttgttggcgaagagaagcgg  197900
                                                                                             -------
                                                                                            --------
                                                                                            --------
                                                                                            <-------
             --------->ARR11(3)                     <---------HSFC1(2)             <------MYB83
--------ARR11(3)                                    --------->HSFC1(2)             <---------MYB46(3)
-------GLK1(1)                                      <---------At4g35610            ----------->GT1
------>GLK1(1)--------->CCA1(2)                    --------->ANAC58                <------MYB46(1)
->At4g35610----------->ARR10                       --------->ANAC58               <---------AtMYB61
------ZmHOX2a(2)                               <---------HSFB2a(2)              *TSS        --------
------->ARR10<---------ARR11(3)                --------->HSFB2a(2)              <------------CBF
 
agatcagagagagtgagatatgtgtatttatagttagaactaagactcttatggaagctactatatacttaagtgaataatgggattggttgaaagattt  198000
                                                                     ----------->GT1
                                                                    <---------ANAC46
         --------->MYB52(1)                                         <---------DEAR3(1)
     ---------->DOF2                  <---------ANAC46          <---------ZAT2
----------->GT1                     --------->ALFIN1            <---------At4g35610
-->CCA1(2)                          <---------MYB46(3)          --------->At4g35610
->ARR14(2)                         --------->ALFIN1    ---------->DOF2--------->At5g28300     <-----
->ARR11(1)                 --------->ICU4       <------ZmHOX2a(1)  <---------LBD16            <-----
--ARR14(2)              --------->WRKY18(1) <---------TOE1(1)   --------->ZAT2<------------MYB.PH3(2)
->ARR11(3)    <---------GLK1(2) <---------AtMYB61  --------->MYB52(1)<---------ANAC46     <---------
 
gggagtttaaaagaacggagtctcatggtcatggtgaggttgtgggaacgaggataacgaaagcgatagctgcggtgaataacaaactttcttcttttct  198100
                                    <---------ANAC55(1)
                                    <---------ANAC55(2)
                                    <---------ANAC46
                                    <---------ANAC58
                                    --------->ANAC55(2)                                   ----------
                                    <---------ANAC58                               <---------ARR11(3)
                     --------->ARR11(3)                                            --------->ARR11(3)
----ANAC58           <---------ARR11(3)    <----------DOF2               <---------AHL20(2)
----ANAC58    --------->At4g35610  --------------->AtSPL8   <----------DOF2    ---------->DOF2
-DOF2 <------ZmHOX2a(1)        <----------DOF2     <----------DOF2       --------->AHL20(2)
 
tgtggatgaggaatattagctcaagatttcaaaacttttacgtgctcttttcttctttcaattcttttttttataaaaaaataaaaggtctcagaaaggt  198200
                                                                                     <----------DOF2
                                                                                   ------>MYB46(1)
                                                                                   ------>MYB83
                                                                                  <---------ALFIN1
                                                                                 <---------MYB55(2)
                                                                                 --------->MYB46(3)
                                                                                --------->ANAC58
                                                                                ------>MYB46(1)
                                                                                ------>MYB83
                                                                                --------->ANAC58
                                                                              --------->DEAR3(1)
                                                                              --------->AtMYB61
                                                                              <---------ALFIN1
                                                                             --------->MYB46(3)
                                                                           --------->YAB1
                 --------->YAB1                -------->P                  <-----------GT1
                <---------YAB1 <------ZmHOX2a(2)                           <---------ICU4
      --------->DAG2          <---------ARR14(2)                        --------->YAB1
  <------ZmHOX2a(1)<---------YAB1      <----------DOF2                  <---------ICU4
  ====================================HOX2a_HOX2a                  <XXXXXXXXXXXXXXXXXXXXMIR823
>DOF2 --------->MYB59         --------->ARR14(2)<-----------------AGL1 <---------AHL20(2)      -----
 
ttagaggataaggtcccttatcatgaaaacaaggatcagcctctttcacttaccctctcaggctctcatcttaaataatcaccacccactttagatgtta  198300
                             <-------TEIL
                            <------ZmHOX2a(2)
                           <---------ARR14(2)
                           --------->AGP1                                                 <-------TEIL
                           --------->ARR14(2)                                     <---------HSFB2a(2)
                           <---------ARR11(3)                    <---------YAB1--------->GLK1(2)====
                           --------->ARR11(3)                 <---------WOX13(1)  --------->HSFB2a(2)
---->MYB59             ---------->DOF2             --------->HSFB2a(2)     --------->ANAC46     <---
 
ggccatttgtttgtggtatacatatagaaagatccatacttctctaggctctctctagaccagagattgctattgtatacacaatctagaagatgcaaag  198400
                                     ------->GAMYB
                                  --------->MYB52(1)
                            --------->ANAC58                                      --------->AHL20(2)
                       --------->ANAC46                                  <------ZmHOX2a(1)
        <------ZmHOX2a(2)   --------->ANAC46                            ----------->GT1
===============HOX2a_HOX2a  --------->ANAC58                           ----------->GT1          <---
---ZmHOX2a(1)    <---------ZAT14  ----------->RAV1(1)     <---------AtLEC2    --------->AHL20(2)----
 
gattaacatcgatcatggactgttctactctacgaaacaacagactcagtgaaaactcttagcatgaaaatgaagaggaaataaaaaaaatagagaagaa  198500
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AGI:  At3g01500.1   
Description:  CA1 (CARBONIC ANHYDRASE 1); carbonate dehydratase/ zinc ion binding. Identical to Carbonic anhydrase, chloroplast precursor (CA1) [Arabidopsis Thaliana] (GB:P27140;GB:Q0WWA9;GB:Q8RWW2;GB:Q93VR8); similar to CA2 (BETA CARBONIC ANHYDRASE 2), carbonate dehydratase/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G14740.2); similar to CA2 (BETA CARBONIC ANHYDRASE 2), carbonate dehydratase/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G14740.1); similar to chloroplast carbonic anhydrase precursor [Thlaspi caerulescens] (GB:AAS65454.1); contains InterPro domain Carbonic anhydrase, prokaryotic-like, conserved site; (InterPro:IPR015892); contai
Range:  from: 194731    to: 197981    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
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