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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
ANAC55(2)
--------->
ANAC46
<-------
TEIL
<---------
ARR14(2)
--------->
GLK1(1)
<-----------
ARR10
<---------
ARR14(2)
--------->
At4g35610
<------
NtERF2
<---------
ARR14(2)
<---------
MYB46(3)
--------->
ARR14(2)
--------->
MYB46(3)
--------->
LBD16
<---------
MYB46(3)
<---------
ANAC46
--------->
ANAC46
<---------
At4g35610
<---------
LBD16
<---------
ALFIN1
<---------
ZAT14
--------->
DEAR3(2)
--------->
AtMYB61
------------>
AtMYB77
--------->
DEAR3(1)
--------->
ZAT2
--------->
LBD16
--------->
ANAC46
--------->
ARR14(2)
--------->
AtMYB61
--------->
At4g35610
<---------
ALFIN1
--------->
SPL7
--------->
ARR14(2)
<---------
ALFIN1
<---------
At4g35610
------>
ZmHOX2a(1)
<---------
SPL7
--------->
ARR14(2)
--------->
DEAR3(1)
<---------
At4g35610
------>
ZmHOX2a(1)
<---------
ANAC58
<---------
GLK1(1)
--------->
MYB46(3)
<---------
ZAT2
<---------
ALFIN1
<---------
ANAC58
--------->
CCA1(2)
---------
ZAT18
------>
ZmHOX2a(1)
------>
ZmHOX2a(1)
<---------
ANAC46
<----------
TaMYB80
->
MYB59
<---------
LBD16
<---------
ALFIN1
--------->
At4g35610
---------->
TaMYB80
-
HVH21
--------->
DEAR3(1)
<---------
ALFIN1
--------->
ZAT14
<---------
ARR14(2)
attgcaccacctccgcatcctccgctgctgtttccgactctccctcctcctcctccacagcagttgctgcgtccgaaccggcggatatacgtcttccatc
165900
<------
ZmHOX2a(2)
<---------
ARR14(2)
--------->
ARR14(2)
<---------
LBD16
<---------
ALFIN1
------>
NtERF2
--------->
DEAR3(1)
--------->
AtMYB61
<---------
ALFIN1
<---------
ALFIN1
------>
NtERF2
------>
ZmHOX2a(2)
--------->
MYB46(3)
--------->
ATERF1(1)
------>
NtERF2
--------->
LBD16
--------->
DEAR3(1)
<---------
ATERF1(1)
-
<---------
ETT(1)
--------->
DEAR3(1)
-
--------->
At4g35610
--------->
ANAC58
-
<---------
ZAT2
--------->
ANAC46
--------->
AtMYB61
--------
<---------
GLK1(1)
--------->
ANAC58
<---------
ALFIN1
------>
ZmHOX2a(2)
--------->
ZAT2
<---------
LBD16
--------->
MYB46(3)
<---------
ANAC58
--------->
DEAR3(1)
=======================
HOX2a_HOX2a
<---------
ANAC58
----------->
HVH21
======================
HOX2a_HOX2a
<---------
ETT(2)
--
<-------
TEIL
----------->
HVH21
------>
ZmHOX2a(1)
--------->
MYB46(3)
--------->
ETT(2)
<------
taggtccagcgacgagctccgaccactccctcatcctccgccaccctcggatccaccatcgctcgtcgggttcgagtttgtcgacggtcgtgatccgttg
166000
------>
NtERF2
--------->
LBD16
<------
NtERF2
--------->
ANAC46
--------->
DEAR3(1)
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
--------->
CCA1(2)
--------->
ARR14(1)
<---------
ARR14(2)
--------->
ARR14(2)
--------->
ARR11(3)
--------->
AGP1
<---------
GLK1(2)
----------->
ARR10
<---------
ZAT14
<
--------->
ZAT14
--------
--------->
AtMYB61
<-------
PIF5
<-
<---------
ALFIN1
------->
PIF5
<-
----------->
RAV1(1)
--------->
ANAC58
<---------
ANAC46
-------->
bZIP60(2)
<------
NtERF2
-------->
P
-----------------
-------->
MYB46(3)
--------->
ANAC58
------->
GAMYB
--------->
ANAC46
<--
-------->
ANAC46
<---------
At4g35610
<------
ZmHOX2a(1)
<---------
HSFB2a(2)
<-------
->
At4g35610
--------->
DEAR3(1)
--------->
ANAC58
<---------
MYB111(2)
--------->
ANAC58
<--
---->
NtERF2
------>
NtERF2
--------->
At4g35610
----------->
GT1
--------->
HSFB2a(2)
<--------
---
MYB52(1)
--------->
LBD16
<---------
ANAC46
--------->
ANAC58
--------->
MYB46(3)
--------->
ANAC58
<--
ccaccacacagatccgccgcgagttgatggctgagatgaggcaaggcagggcatgaggaaacaacaacctcgcttcgcgaacaacgcctcgtgcatatcg
166100
<---------
WOX13(1)
<-------
GAMYB
<---------
MYB46(3)
<------
NtERF2
--------->
ATERF1(1)
------>
NtERF2
<---------
ATERF1(1)
<---------
DEAR4(2)
<---------
RAP2.3(1)
<---------
ORA47(2)
<---------
ERF1
<---------
RAP2.3(2)
<---------
bZIP60(1)
<---------
RAP2.3(3)
<------
NtERF2
--------->
ATERF1(2)
------>
NtERF2
--------->
DEAR3(1)
-------
GAMYB
<---------
ATERF1(2)
->
ARR14(2)
<---------
DEAR3(1)
--------->
STY1(2)
--------
DEAR3(2)
<---------
ABI4(1)
<---------
STY1(2)
--------
MYB46(3)
--------->
ATERF1(1)
------>
ZmHOX2a(2)
---->
WRI1
<---------
LBD16
=============
-------
At1g77200
<---------
DEAR3(1)
--------->
AGP1
--
ARR14(2)
------>
ZmHOX2a(2)
------>
ZmHOX2a(1)
-------
DEAR3(1)
<------
ZmHOX2a(2)
<---------
ANAC58
-
CCA1(2)
<---------
At4g35610
<---------
GLK1(1)
-------
DREB2C(2)
--------->
ARR14(2)
--------->
TOE1(2)
<---------
ANAC58
<
tcggtggcatcaacttcagcgatcggcggcgattgatgactcat
tctcagagagaaacagaaacgaaggaaatatggaatttcgtcctgatctagctact
166200
================
HOX2a_HOX2a
<---------
ARR11(3)
--------->
ARR11(3)
<-----
=============
HOX2a_HOX2a
-------
------>
ZmHOX2a(1)
<-----------
GT1
<------
--------->
TOE2(3)
--------->
TOE2(3)
--------
---------->
ID1
------>
ZmHOX2a(1)
--------->
TOE1(3)
-----------
================
HOX2a_HOX2a
--------->
ZAT6
<-----------
GT1
--------->
GLK1(1)
---------
----------
DOF2
------>
ZmHOX2a(2)
--------->
At4g35610
*
TSS
--------->
ANAC46
<---------
DAG2
ctcttttgtctccttagatcgtcgttcctcttctcatctccaactctaaaccct
aattttctccctctacccaagagatttctatcaccttctccaatca
166300
--------->
LBD16
--------->
ANAC46
<---------
LBD16
-------->
P
------>
MYB83
------>
MYB46(1)
------>
NtERF2
--------->
DEAR3(1)
--------->
AtMYB61
--------->
MYB46(3)
<---------
ALFIN1
------->
GAMYB
--------->
RAP2.6(2)
--------->
DEAR3(1)
--------->
ANAC46
--------->
DEAR3(2)
<------------
AtMYB77
<---------
ARR14(2)
<---------
CCA1(2)
--------->
ARR14(2)
<-------
----
WRKY38(1)
--------->
MYB52(1)
--------->
MYB46(3)
-->
MYB46(3)
<---------
ANAC58
<---------
At5g28300
---
ATHB12
--------->
At5g28300
<---------
ANAC58
<------
NtERF2
<-----------
GT1
->
ANAC46
----------->
GT1
---------->
DOF2
----------->
HVH21
<----------
DOF2
->
CBF
--------->
At4g35610
--------->
MYB52(1)
<---------
LBD16
<-----------
GT1
<---------
>
WOX13(1)
<---------
At4g35610
--------->
ZAT18
--------->
MYB46(3)
<---------
YAB1
<-----------
GT1
acgcgtctcttgagctgtaactaaaacagaagagcacaaaacggcgtaaccgccaacccggcaatattggttctcattaaccctttttaaccgctttggt
166400
<---------
At4g35610
<---------
MYB52(1)
--------->
AHL20(1)
--------->
ANAC46
--------->
AHL20(2)
--------->
ANAC58
<---------
ZAT2
<---------
AHL20(1)
--------->
ANAC55(2)
--------->
At4g35610
--------->
ANAC55(1)
--------->
LBD16
<---------
AHL20(2)
--------->
ANAC58
<---------
LBD16
--------->
AHL20(2)
<---------
ANAC55(2)
--------->
MYB52(1)
<---------
AHL20(2)
<-------
TEIL
--------->
DOF5.7(2)
----------->
HVH21
<---------
AHL20(2)
<---------
ARR14(2)
<--
<-----------
ARR10
<---------
At4g35610
----------->
RAV1(1)
<-------
TEIL
<---------
TOE2(3)
--
AtMYB61
<---------
LBD16
--------->
AHL20(2)
<---------
YAB1
--------->
ARR14(2)
<--
-
DOF2
<---------
MYB52(2)
<---------
MYB46(3)
<-----------
GT1
----------->
GT1
<---------
WOX13(1)
tttatcacatctaaccgggaatttcagctgttgatgctattaatttattaaaccacatatgaatgaaggggttcatatacgtaattgacgttagcacatt
166500
<---------
AHL20(2)
--------->
YAB1
--------->
LBD16
--------->
ANAC58
--------->
ANAC58
--------->
ANAC46
---------->
DOF2
--------->
TOE2(3)
<---------
MYB52(1)
<---------
GLK1(1)
<-------
TEIL
--------->
AHL20(2)
<---------
MYB46(3)
----------------->
AGL3
--------->
RAP2.6(2)
----------------->
AGL2
<<
=========================================================================
MADS_MADS
---------
----
MYB83
------>
ZmHOX2a(2)
<---------
AHL20(1)
<-----------------
AGL3
<---------
At4g35610
----
MYB46(1)
<---------
WOX13(1)
<---------
AHL20(2)
----------------->
AGL3
--------->
At4g35610
tggttccaagtattgatcgatacattaaaccgcaataaaattggtccgtttctctctggcccaaaattggttcgatttctccataagctgaaattgataa
166600
<----------
DOF2
------>
MYB83
------>
MYB46(1)
<---------
MYB46(2)
<---------
MYB59
--------->
GLK1(2)
<---------
MYB111(1)
<---------
ANAC55(2)
------->
TEIL
<-----------
GT1
<---------
ARR11(3)
<---------
MYB46(3)
--------->
ATHB12
--------->
TOE2(3)
xxxxxxxxxxxxxxx>
smallRNA(fl3)
<<<<<<<<<<<<<<<
LFY
<---------
YAB1
<-------
TEIL
<---------
KAN4(1)
--------->
ANAC55(2)
------
>
YAB1
<---------
CCA1(2)
<---------
GLK1(2)
--------->
MYB46(3)
xxxxxxxxxxxxxxxx>
smallRNA(i)
ctcccagtggatgtaatgtatctaa
tattcttggaacagattcattgcaagtgaatgttctaaccaaaatcacctaatctttttgcaaaatctaatatag
166700
<----------
DOF2
<---------
DAG2
<---------
AHL20(1)
--------->
ARR11(3)
<-----------
ARR10
--------->
AHL20(1)
----------->
GT1
------>
MYB46(1)
--------->
RVE1(1)
--------->
YAB1
<----------
DOF2
------>
MYB83
--------->
CCA1(1)
--------->
ANAC58
--------------->
AGL15
<---------
HSFB2a(2)
--------->
YAB1
--------->
ANAC58
<---------------
AGL15
--------->
HSFB2a(2)
<------
ZmHOX2a(1)
--------->
ANAC46
--------->
LBD16
-------->
P
<---------
At4g35610
----------->
GT1
--------->
MYB46(3)
--------->
MYB52(1)
--------->
TOE1(2)
--------->
At4g35610
----->
GT1
<---------
ARR11(3)
<---------
ATHB12
--------->
TOE2(3)
--------->
REM1(1)
taagtaggataatatcttacttttgcaacaagccactcattcgtaaaaaccggacatactttaatgggataacctacaagtctacaactcatctggaaac
166800
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AGI:
At3g01430.1
Description:
similar to NHL repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G14890.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN80444.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14804.1)
Range:
from: 165415
to: 166254
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At3g01435.1
Description:
Expressed protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO67961.1)
Range:
from: 166626
to: 168295
Orientation: Reverse
Links:
TAIR
MIPS
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publications
when using AthaMap.
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